Mpc1l (mitochondrial pyruvate carrier 1-like) - Rat Genome Database

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Gene: Mpc1l (mitochondrial pyruvate carrier 1-like) Rattus norvegicus
Analyze
Symbol: Mpc1l (Ensembl: AABR07037058.1)
Name: mitochondrial pyruvate carrier 1-like
RGD ID: 1563528
Description: Predicted to be involved in mitochondrial pyruvate transmembrane transport. Predicted to be located in mitochondrial inner membrane. Orthologous to human MPC1L (mitochondrial pyruvate carrier 1 like); INTERACTS WITH bisphenol A; manganese(II) chloride; benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: brain protein 44-like protein 2; hypothetical protein LOC503429; LOC503429; RGD1563528; similar to Brain protein 44-like; SLC54A3; solute carrier family 54 member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,819,002 - 12,819,873 (-)NCBIGRCr8
mRatBN7.2X10,146,274 - 10,147,145 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX10,146,293 - 10,147,145 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX10,327,613 - 10,328,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,824,776 - 13,825,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X10,093,916 - 10,094,786 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X11,098,849 - 11,105,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X11,896,695 - 11,903,804 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X22,226,086 - 22,226,957 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX10,670,984 - 10,671,855 (-)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635  


Genomics

Comparative Map Data
Mpc1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,819,002 - 12,819,873 (-)NCBIGRCr8
mRatBN7.2X10,146,274 - 10,147,145 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX10,146,293 - 10,147,145 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX10,327,613 - 10,328,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,824,776 - 13,825,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X10,093,916 - 10,094,786 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X11,098,849 - 11,105,312 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X11,896,695 - 11,903,804 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X22,226,086 - 22,226,957 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX10,670,984 - 10,671,855 (-)NCBICelera
Cytogenetic MapXq12NCBI
MPC1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X40,623,428 - 40,624,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX40,623,428 - 40,624,136 (+)EnsemblGRCh38hg38GRCh38
GRCh37X40,482,680 - 40,483,388 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X40,367,019 - 40,368,332 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX44,623,128 - 44,623,698 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX38,213,937 - 38,214,507 (+)NCBIHuRef
CHM1_1X40,515,292 - 40,515,862 (+)NCBICHM1_1
T2T-CHM13v2.0X40,024,973 - 40,025,681 (+)NCBIT2T-CHM13v2.0
Gm4984
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X12,518,492 - 12,519,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX12,518,542 - 12,518,901 (+)EnsemblGRCm39 Ensembl
GRCm38X12,652,253 - 12,652,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX12,652,303 - 12,652,662 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X12,229,009 - 12,229,947 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X11,808,842 - 11,809,780 (+)NCBIMGSCv36mm8
CeleraX10,345,774 - 10,346,712 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX7.49NCBI
Mpc1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555651,981,707 - 1,986,643 (-)NCBIChiLan1.0ChiLan1.0
MPC1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X42,267,829 - 42,270,892 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X42,272,947 - 42,273,893 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,071,311 - 33,071,977 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X40,774,380 - 40,775,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX40,774,479 - 40,774,889 (+)Ensemblpanpan1.1panPan2
MPC1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,096,805 - 35,098,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX22,445,067 - 22,446,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,145,198 - 35,146,405 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X35,224,266 - 35,225,473 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,196,955 - 35,198,162 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,239,762 - 35,240,969 (+)NCBIUU_Cfam_GSD_1.0
Mpc1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X27,415,351 - 27,415,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,256,149 - 7,256,553 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,256,149 - 7,256,553 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MPC1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,325,996 - 36,326,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X36,325,447 - 36,331,779 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X40,423,970 - 40,424,842 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MPC1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X37,784,116 - 37,786,156 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660762,982,971 - 2,983,675 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mpc1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,929,697 - 14,930,107 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476214,929,555 - 14,930,237 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mpc1l
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat

Markers in Region
RH143076  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X10,147,650 - 10,147,949 (+)MAPPERmRatBN7.2
Rnor_6.0X11,102,302 - 11,102,600NCBIRnor6.0
Rnor_5.0X11,900,859 - 11,901,157UniSTSRnor5.0
RGSC_v3.4X22,227,463 - 22,227,761UniSTSRGSC3.4
CeleraX10,672,361 - 10,672,659UniSTS
RH 3.4 MapX39.3UniSTS
Cytogenetic MapXq13UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000031670   ⟹   ENSRNOP00000086174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX10,146,293 - 10,147,145 (-)Ensembl
RefSeq Acc Id: NM_001109365   ⟹   NP_001102835
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X12,819,002 - 12,819,873 (-)NCBI
mRatBN7.2X10,146,274 - 10,147,145 (-)NCBI
Rnor_6.0X11,100,925 - 11,101,796 (-)NCBI
Rnor_5.0X11,896,695 - 11,903,804 (-)NCBI
RGSC_v3.4X22,226,086 - 22,226,957 (-)RGD
CeleraX10,670,984 - 10,671,855 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086174.1
RefSeq Acc Id: NP_001102835   ⟸   NM_001109365
- UniProtKB: A0A8I6A677 (UniProtKB/TrEMBL),   A6K000 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000086174   ⟸   ENSRNOT00000031670

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563528 AgrOrtholog
BioCyc Gene G2FUF-3064 BioCyc
Ensembl Genes ENSRNOG00000023163 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031670.6 UniProtKB/TrEMBL
InterPro MPC UniProtKB/TrEMBL
KEGG Report rno:503429 UniProtKB/TrEMBL
NCBI Gene 503429 ENTREZGENE
PANTHER UPF0041 BRAIN PROTEIN 44-RELATED UniProtKB/TrEMBL
Pfam MPC UniProtKB/TrEMBL
PhenoGen Mpc1l PhenoGen
RatGTEx ENSRNOG00000023163 RatGTEx
UniProt A0A8I6A677 ENTREZGENE, UniProtKB/TrEMBL
  A6K000 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Mpc1l  mitochondrial pyruvate carrier 1-like  RGD1563528  similar to Brain protein 44-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563528  similar to Brain protein 44-like   RGD1563528_predicted  similar to Brain protein 44-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563528_predicted  similar to Brain protein 44-like (predicted)  LOC503429  similar to Brain protein 44-like  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503429  similar to Brain protein 44-like      Symbol and Name status set to provisional 70820 PROVISIONAL