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Gene: Vstm5 (V-set and transmembrane domain containing 5) Rattus norvegicus
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Symbol: Vstm5
Name: V-set and transmembrane domain containing 5
Description: Predicted to be involved in several processes, including filopodium assembly; positive regulation of excitatory synapse assembly; and protein homooligomerization. Predicted to localize to several cellular components, including the axon; dendrite; and integral component of membrane. Orthologous to human VSTM5 (V-set and transmembrane domain containing 5); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: hypothetical gene supported by BC088439; hypothetical protein LOC500947; LOC500947; V-set and transmembrane domain-containing protein 5
Orthologs:
Homo sapiens (human) : VSTM5 (V-set and transmembrane domain containing 5)  HGNC  Alliance
Mus musculus (house mouse) : Vstm5 (V-set and transmembrane domain containing 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vstm5 (V-set and transmembrane domain containing 5)
Pan paniscus (bonobo/pygmy chimpanzee) : VSTM5 (V-set and transmembrane domain containing 5)
Canis lupus familiaris (dog) : VSTM5 (V-set and transmembrane domain containing 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vstm5 (V-set and transmembrane domain containing 5)
Sus scrofa (pig) : VSTM5 (V-set and transmembrane domain containing 5)
Chlorocebus sabaeus (African green monkey) : VSTM5 (V-set and transmembrane domain containing 5)
Heterocephalus glaber (naked mole-rat) : Vstm5 (V-set and transmembrane domain containing 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0813,796,009 - 13,816,125 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,796,021 - 13,816,109 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,735,551 - 13,755,650 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,041,325 - 12,061,557 (+)NCBIRGSC3.4rn4RGSC3.4
Celera813,547,930 - 13,568,159 (+)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vstm5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1563328
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.