Ubtfl1 (upstream binding transcription factor like 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Ubtfl1 (upstream binding transcription factor like 1) Rattus norvegicus
Analyze
Symbol: Ubtfl1
Name: upstream binding transcription factor like 1
RGD ID: 1563188
Description: INVOLVED IN blastocyst growth (ortholog); embryo implantation (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); INTERACTS WITH benzo[a]pyrene (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC300386; RGD1563188; similar to UBF transcription factor, short form - rat; upstream binding transcription factor, RNA polymerase I-like 1; upstream-binding factor 1-like protein 1
RGD Orthologs
Human
Mouse
Bonobo
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: not annotated on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.4816,454,154 - 16,455,341 (+)NCBIRGSC3.4rn4RGSC3.4
Celera817,502,349 - 17,503,536 (+)NCBICelera
Cytogenetic Map8q12NCBI


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:19915186  


Genomics

Comparative Map Data
Ubtfl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.4816,454,154 - 16,455,341 (+)NCBIRGSC3.4rn4RGSC3.4
Celera817,502,349 - 17,503,536 (+)NCBICelera
Cytogenetic Map8q12NCBI
UBTFL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1190,085,950 - 90,087,131 (+)EnsemblGRCh38hg38GRCh38
GRCh381190,085,950 - 90,087,131 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371189,819,118 - 89,820,299 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361189,458,757 - 89,459,947 (+)NCBINCBI36hg18NCBI36
Celera1185,144,267 - 85,145,448 (+)NCBI
Cytogenetic Map11q14.3NCBI
HuRef1185,903,248 - 85,904,429 (+)NCBIHuRef
CHM1_11189,702,145 - 89,703,327 (+)NCBICHM1_1
Ubtfl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39918,315,714 - 18,322,798 (+)NCBIGRCm39mm39
GRCm38918,404,418 - 18,411,502 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl918,404,418 - 18,413,177 (+)EnsemblGRCm38mm10GRCm38
MGSCv37918,208,862 - 18,215,946 (+)NCBIGRCm37mm9NCBIm37
MGSCv36918,154,820 - 18,161,904 (+)NCBImm8
Celera915,688,053 - 15,695,137 (+)NCBICelera
Cytogenetic Map9A2NCBI
UBTFL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v01148,971,442 - 48,972,814 (+)NCBIMhudiblu_PPA_v0panPan3
UBTFL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1923,060,755 - 23,069,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBTFL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1181,168,060 - 81,173,080 (+)NCBI
Ubtfl1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624845326,830 - 328,587 (-)NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:15
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000061364
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001075304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAHX01053478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_001075304   ⟹   XP_001075304
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera817,502,349 - 17,503,536 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_001075304 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001075304   ⟸   XM_001075304
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene 300386 ENTREZGENE
PhenoGen Ubtfl1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-09-21 Ubtfl1  upstream binding transcription factor like 1  Ubtfl1  upstream binding transcription factor, RNA polymerase I-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-12 Ubtfl1  upstream binding transcription factor, RNA polymerase I-like 1  RGD1563188  similar to UBF transcription factor, short form - rat   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563188  similar to UBF transcription factor, short form - rat   RGD1563188_predicted  similar to UBF transcription factor, short form - rat (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563188_predicted  similar to UBF transcription factor, short form - rat (predicted)  LOC300386  similar to UBF transcription factor, short form - rat  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC300386  similar to UBF transcription factor, short form - rat      Symbol and Name status set to provisional 70820 PROVISIONAL