Tlcd4 (TLC domain containing 4) - Rat Genome Database

Name: Tlcd4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Tlcd4 (TLC domain containing 4) Rattus norvegicus

Analyze

Symbol:

Tlcd4

Name:

TLC domain containing 4

RGD ID:

1563041

Description:

Predicted to be involved in lipid homeostasis. Predicted to localize to endoplasmic reticulum. Orthologous to several human genes including TLCD4 (TLC domain containing 4); INTERACTS WITH 17alpha-ethynylestradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC365924; RGD1563041; similar to RIKEN cDNA 4930577M16; TLC domain-containing protein 4; Tmem56; transmembrane protein 56

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Pig

Green Monkey

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TLCD4 (TLC domain containing 4)	HGNC	EggNOG, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tlcd4 (TLC domain containing 4)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB
Chinchilla lanigera (long-tailed chinchilla):	Tlcd4 (TLC domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TLCD4 (TLC domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC490151 (TLC domain-containing protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TLCD4 (TLC domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	TLCD4 (TLC domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TLCD4-RWDD3 (TLCD4-RWDD3 readthrough)	HGNC	EggNOG
Alliance orthologs ³
Mus musculus (house mouse):	Tlcd4 (TLC domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	TLCD4 (TLC domain containing 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	TLCD4-RWDD3 (TLCD4-RWDD3 readthrough)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	tmem56a (transmembrane protein 56a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	TDA4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	YPR114W	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	209,284,873 - 209,360,156 (-)	NCBI
Rnor_6.0 Ensembl	2	224,772,893 - 224,802,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	224,768,034 - 224,843,198 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	217,795,619 - 217,825,516 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	2	201,725,067 - 201,755,365 (-)	NCBI		Celera
Cytogenetic Map	2	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (ISO)

clothianidin (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

glafenine (EXP)

L-methionine (ISO)

methapyrilene (EXP)

methylmercury chloride (ISO)

nickel atom (ISO)

orphenadrine (EXP)

oxaliplatin (EXP)

p-toluidine (EXP)

paracetamol (ISO)

pentanal (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pravastatin (ISO)

rotenone (EXP)

serpentine asbestos (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

titanium dioxide (EXP,ISO)

toluene (ISO)

topotecan (EXP)

tributylstannane (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

valdecoxib (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

lipid homeostasis (IBA)

Cellular Component

cellular_component (ND)

endoplasmic reticulum (IBA)

integral component of membrane (IEA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for gene-chemical interactions
3.	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Tlcd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	209,284,873 - 209,360,156 (-)	NCBI
Rnor_6.0 Ensembl	2	224,772,893 - 224,802,997 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	224,768,034 - 224,843,198 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	217,795,619 - 217,825,516 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	2	201,725,067 - 201,755,365 (-)	NCBI		Celera
Cytogenetic Map	2	q41	NCBI

TLCD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	95,117,355 - 95,197,607 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	95,092,517 - 95,197,607 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	95,558,073 - 95,663,163 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	95,355,572 - 95,431,462 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	1	93,837,320 - 93,917,579 (+)	NCBI
Cytogenetic Map	1	p21.3	NCBI
HuRef	1	93,704,498 - 93,785,093 (+)	NCBI		HuRef
CHM1_1	1	95,672,916 - 95,777,954 (+)	NCBI		CHM1_1

Tlcd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	120,995,657 - 121,076,756 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	3	120,995,410 - 121,076,747 (-)	Ensembl
GRCm38	3	121,202,008 - 121,283,108 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	121,201,761 - 121,283,098 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	120,904,926 - 120,966,234 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	121,194,031 - 121,255,339 (-)	NCBI			mm8
Celera	3	127,550,521 - 127,611,522 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI

Tlcd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	278,510 - 346,391 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	278,795 - 351,707 (+)	NCBI	ChiLan1.0	ChiLan1.0

TLCD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	96,505,151 - 96,585,869 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	96,506,056 - 96,580,115 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	97,754,839 - 97,859,777 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

LOC490151
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	54,131,376 - 54,234,519 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	54,136,690 - 54,234,683 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	56,830,091 - 56,936,347 (-)	NCBI
ROS_Cfam_1.0	6	54,503,453 - 54,608,225 (-)	NCBI
UMICH_Zoey_3.1	6	54,177,753 - 54,284,024 (-)	NCBI
UNSW_CanFamBas_1.0	6	54,164,650 - 54,268,556 (-)	NCBI
UU_Cfam_GSD_1.0	6	54,617,534 - 54,721,134 (-)	NCBI

TLCD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	122,232,587 - 122,365,707 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	122,232,587 - 122,341,187 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	134,013,185 - 134,015,603 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TLCD4
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	38,056,339 - 38,136,862 (-)	NCBI
ChlSab1.1 Ensembl	20	38,062,061 - 38,136,791 (-)	Ensembl

Position Markers

RH142020

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	224,771,814 - 224,771,999	NCBI	Rnor6.0
Rnor_5.0	2	242,814,643 - 242,814,828	UniSTS	Rnor5.0
RGSC_v3.4	2	217,794,540 - 217,794,725	UniSTS	RGSC3.4
Celera	2	201,723,988 - 201,724,173	UniSTS
RH 3.4 Map	2	1501.0	UniSTS
Cytogenetic Map	2	q41	UniSTS

BF409351

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	2	224,798,224 - 224,798,349	NCBI	Rnor6.0
Rnor_5.0	2	242,841,053 - 242,841,178	UniSTS	Rnor5.0
RGSC_v3.4	2	217,820,863 - 217,820,988	UniSTS	RGSC3.4
Celera	2	201,750,777 - 201,750,902	UniSTS
RH 3.4 Map	2	1521.9	UniSTS
Cytogenetic Map	2	q41	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631203	Gluco14	Glucose level QTL 14		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	2	221880206	235570970	Rat
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204003742	231132207	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	149114878	225501939	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	181990297	240020001	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204585642	235290110	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204003742	231132207	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147122993	240020001	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	147122993	240020001	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	183984665	228984665	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	204585642	243689611	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	199380312	244380312	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	116075644	228737869	Rat
1302789	Stl26	Serum triglyceride level QTL 26	3.1	0.0035	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	218957047	240977220	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	254121739	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	237742948	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	214870793	251212353	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	217743855	262743855	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	181522444	226522444	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	205583921	243562243	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	217498545	254132424	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	194378622	239378622	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	116075644	228737869	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	175403337	239166203	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	118446646	227707979	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83819608	239166203	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828236	243550655	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83819608	243901375	Rat
2299161	Iddm33	Insulin dependent diabetes mellitus QTL 33	2.98		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	221488355	254121739	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	142053350	228984665	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	118446793	228582621	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	177680772	243901375	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	200453324	236318668	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	200453324	236318668	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	208594330	263179188	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	188838511	228984665	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	204585642	249585642	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204585642	249585642	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	194998627	239998627	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	197253963	242253963	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	197253963	242253963	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	197253963	242253963	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	169852670	243026643	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83754907	237610852	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	197253963	242253963	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	657
Count of miRNA genes:	282
Interacting mature miRNAs:	352
Transcripts:	ENSRNOT00000032324
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			35	35	9	35	7	8	35	4	19	11	7
Low	3	43	22	6	10	6	1	3	39	31	22		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC061828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000032324 ⟹ ENSRNOP00000033667

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	224,772,893 - 224,802,997 (-)	Ensembl

RefSeq Acc Id:

NM_001135879 ⟹ NP_001129351

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,289,732 - 209,319,573 (-)	NCBI
Rnor_6.0	2	224,772,893 - 224,802,997 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI
RGSC_v3.4	2	217,795,619 - 217,825,516 (-)	RGD
Celera	2	201,725,067 - 201,755,365 (-)	RGD

Sequence:

show sequence

ATGGAGGCCAACACTAACGTGGTCATCGGCACCGTCTGCTGCAGCTTTGTCACTTTTCAGCTTC
TTTTCCATTTCATAAGTTGCTGGTTTTCAGCAAGAGTCTCTCTGGGCTATAACAGTCTCAGCAC
CGAGAAGAAGATCGAATGGAACTCGAGGGTAGTGTCCACGTGCCACTCTATGCTGGTTGGGATT
TTTGGTTTATACCTCTTCTTCTTCGATGAAGCTACTATAGCTGATCCACTCTGGGGTGATCCAT
CACTTGTGAAAATAAATATTTCGACTGCTTCAGGCTACCTCATTTCTGATTTATTGATTATACT
TTTTAATTGGAAAGTGATCGGAGACAAATTTTTTATAATTCACCATTGCGCAGGACTAATTGCA
TACTACTTTGTATTGAAAATTGGAGTGCTTGCATACATTGCCAATTTCCGCCTGCTTGCTGAGC
TTTCCAGCCCCTTTGTAAACCAGAGATGGTTCTTTGAAGTCCTGAAGTACCCCAAGTTTTCCAA
AGTCAATGTCATCAATGGAATTCTTATGACCGTGGTCTTTTTCATCGTGCGGATCATCGCGATA
CCTCCAATGTACTTCTACGTTTACTCCGTGTACGGAACAGAACCCTACATAAGGCTTGGATCTG
TAGTCCATTTTGTCTGGATCTCTTCTTGTATTGTTTTAGATGTGATGAACATCATGTGGATGAT
CAAAATCACAAAAGGATGCATGAAAGTCATCTCTCTCATCAGACAAGAGAAAGCCAAGGACAGC
CTTCAGAATGGAAAACTCGATTAAAGGCGGCTTCATCAGACAGCTGTGTCCACAGACCATCTTC
ATTCCGCTGTCTTGTCTGATAGGACGAGTTCTGTGCCGGCCGCTGTCAGGCAGTGTTGTTACTG
TGGCGCTCTCAGTGTTTTCGTTTCTCCTTTCTTTCCTCTTTAGACAGGAGAAAATGCAATTTAG
TTCTCATTTCAGGATTTCTTCTTTGCTTCTATATTTTTAGGCATGGATGGAAATCGAAAGGTTT
AAATAAAAGTTGTAAGTAGAGTGGTAAAA

hide sequence

RefSeq Acc Id:

XM_006233244 ⟹ XP_006233306

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,340,898 (-)	NCBI
Rnor_6.0	2	224,768,034 - 224,824,172 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI

Sequence:

show sequence

GCCCCGCCCACTCTGGCCTGGGGTCGGAGCCGCGGCGAGCGCCAGCCCAGTCCGAGCGGCCGCG
TCCCCTTTAAGGAGCCGCTCTGCGGTAACCCGAGCCCGCAGTCCGGGCGGGCGCGGCGGCAGCG
CGAGCCTCGGCGACAGCTCCTTCAGGCTCCCCCGGCTTCCCGCGAGCATCTCGCGCGTGGCTCG
GGCCGGCGCAGCCCTCGGGCCGGCTGGATGATCAGGCGCCTGTGAGCCCCGCTGCGCTCTCCCC
GCCCCGCGCAGCCGCCGCCCGCGGGAGGCGTCCCGGGACCGGGCACAGGCAATGGTCTATGACT
TTGGCTTAAATGATTCTTAGAAATTATCCGACCAACTCTTTCAATTTATAGATGAGAAAACTGA
GTCAAAAAGAAACAGGTTGAAGGACGATGGAGGCCAACACTAACGTGGTCATCGGCACCGTCTG
CTGCAGCTTTGTCACTTTTCAGCTTCTTTTCCATTTCATAAGTTGCTGGTTTTCAGCAAGAGTC
TCTCTGGGCTATAACAGTCTCAGCACCGAGAAGAAGATCGAATGGAACTCGAGGGTAGTGTCCA
CGTGCCACTCTATGCTGGTTGGGATTTTTGGTTTATACCTCTTCTTCTTCGATGAAGCTACTAT
AGCTGATCCACTCTGGGGTGATCCATCACTTGTGAAAATAAATATTTCGACTGCTTCAGGCTAC
CTCATTTCTGATTTATTGATTATACTTTTTAATTGGAAAGTGATCGGAGACAAATTTTTTATAA
TTCACCATTGCGCAGGACTAATTGCATACTACTTTGTATTGAAAATTGGAGTGCTTGCATACAT
TGCCAATTTCCGCCTGCTTGCTGAGCTTTCCAGCCCCTTTGTAAACCAGAGATGGTTCTTTGAA
GTCCTGAAGTACCCCAAGTTTTCCAAAGTCAATGTCATCAATGGAATTCTTATGACCGTGGTCT
TTTTCATCGTGCGGATCATCGCGATACCTCCAATGTACTTCTACGTTTACTCCGTGTACGGAAC
AGAACCCTACATAAGGCTTGGATCTGTAGTCCATTTTGTCTGGATCTCTTCTTGTATTGTTTTA
GATGTGATGAACATCATGTGGATGATCAAAATCACAAAAGGATGCATGAAAGTCATCTCTCTCA
TCAGACAAGAGAAAGCCAAGGACAGCCTTCAGAATGGAAAACTCGATTAAAGGCGGCTTCATCA
GACAGCTGTGTCCACAGACCATCTTCATTCCGCTGTCTTGTCTGATAGGACGAGTTCTGTGCCG
GCCGCTGTCAGGCAGTGTTGTTACTGTGGCGCTCTCAGTGTTTTCGTTTCTCCTTTCTTTCCTC
TTTAGACAGGAGAAAATGCAATTTAGTTCTCATTTCAGGATTTCTTCTTTGCTTCTATATTTTT
AGGCATGGATGGAAATCGAAAGGTTTAAATAAAAGTTGTAAGTAGAGTGGTAAAACTTTTCTGA
ACTCTCAGTGTACGTGAAGGGTAGAAATGGTTTGGTGATTTGGTGGCCTCTGTCCACCACCCAT
TTTGCTGAAGGAATGAGACCGTGTGTGAGCAGCTGTCCGTTGTGTTCTTTGCTAATGTCAGTGC
CTGTGCAAGGCCTCATGTCTAAGTTGCCAAGATGCCCAGGCCACCGGAAATGACACAGTGTCAT
TGGAATATGCAGTCATCTGTTATGATGGAGTATTTCTCATGTTGATAATATCCTATTTGAAAAT
ACTTTATGCATTTTAAGATTTCAGATGCTGCTTTATTTCTGTCTTTAGTGCTTTATCCAATTAT
ATTTTTAAAATGTTATAGTGAGGCAAGGTTTAAGACCCATCTTGTGGCCCATTTGGTCGAATGT
CTTCTGAAAGTGAATACCAGTAGATGACTACTACTTGGGCTGATAGGAGGACCCCTAAGAACAG
GTCCTGAACACTGCGGCCCTCCCCTCTGGTGCCTTGTACTTTCTCCAATGAGGATTATATTCTT
GCAGAATCTTCCCAACTTCCAAGTCTGACACCAGAACATCTGGAACGCTTCTGAAATCAGCCTT
GTGTTGTTGCTGAGACTAAAACTGCAGATAAGGCAGAGTTTGTGCTTTACTCATAGATTTTACT
CAGGCTTGCTCAGTTTATCTTTGCTGTTTTTTTTTTTTTTTTCTTAAAGGGAAGGAAGGAAGGA
AGGAAGGAAGGTGACTTAACCCAAGTATTCTGATTATCAAAACTGTCATTCTATGAGAAAAAAG
TAAATGTGTGCGTGCGTGTGTGTGGGGGTGTTTTTCTTTTTACTTTGATTCTTGTAATCCAAAT
ATAGAATTATAGCTATTATTGCTATTACTTAGCTATTATTGCCTTTATTTATTTTGTCTTCTGA
AGCACTTGACTTTAATGATTGTTCTTAAGAAACAGACTTAATCCAATTAGTGGTGAATACTTGA
ATTTAACTGAACCTAAACCAAAAGATCTAATCCATTTAGAGTCTCAGACTGAAGGAGAGCGTTT
GACTCTCTCATTATTCATCTTATGACGACGAAAGGAGACTAGTGGAATGTAATCAAAACATTTA
ATGTAATGTAGTGTAATTTAATTGTCCAGTACAGATAGAGTCTGGCAAGTTCTGGTATGTTTAA
AGATGGGAATTGAAATTCCAGTCAATCAAATGATAAAAATCAAGTTGATTGTCTTGTGCTTGGT
GTGTTTACTTTGAAAGATAAAGTCACATAAAAGACAGGCCTTTGTCTTCAAAGCAGCTGATGTC
GCACTGGTAATGGCTGGCTAAGTTTATTGCTGTCTCCATCCTAGACTTGCAAGTGTGTATTGGT
TGTGTAGGAATGCAAATGAGTTTATCGCTTGTGGCTCTTTTACAAGAAAATGGGCTTTTTTTTT
TTTAAAGAGAGAAGACACTTAAAAAACTATTTTGGAAATTCACTAAGAAAGGGATAAACCTCGA
GGTAAATATTTTTGGCTTTTTGGATATTGCTACAATTCTGAACACAGATTTTAAACTTGCCATC
AAAATGATGGTAGCATGTAGTTCTGAGTCTTCATGGAGGCAATGAGTGTTTCCTGCTTAAAAGG
TCATATGTATCATTGATCATTGCTGTTATCATCGATTGATTATCATTGATCAATAGAACCGGTT
AGTCTGTTCAGAATACCAAACATTGAACCAAGATTTGCCATTGCCTTTGTTAGCAATCCTTATT
AGCTGCAGCATCTGGAGTTCCAACTCTCCACATCCTTTATAGAAGGACAAGCATTGGAAATATC
CTGCATACTGCCACTGCAGGCAGCGCCCACCGGGGCTATATCTTGCTGTTCTGTGATCGTATTT
ATTAAAACAATGACATTTTCATTTATTGAATGACAAATTTTTGCTAGATATTTTAGATATAAGT
ATTTTGGCTACGTGGATTAATTTAAATGAGTCTATTAGGCATTCTGATATTTAACAAGTCTTAA
AATATTTATAGAAAATAAAAGCAAATTGGTATAAATTTTTAAGCAACTCTATTTTTCTAGAGAA
GATTAGTGACAATCTGAATATGTAGTATTCTAGAAAACAAACTTTAAAAAAGGAGCAAAAATAA
ACTGATAACATGCAAGATCGGGGATCCTGCATTCGATATTTTATGTGTGAGACTTAAAATTTTT
CGAGCTTGGGTTCATAGAATTCGCATTCTGTGTCTAAAATCACTTGAGGGATTGTTTGCATTTA
TTTGAAATTCAAAATGGAGTTATGCATGCATGCAAAGAAATTAACTCAAAGTACTCTAGTACGT
TGGCTTTTTAAAATAGAAGTGGGTTTTTTTCTGTTTTGTTTCGCTTGTTTTCTGTTATTTCATG
GACCCGTCATGTGTTAAGAGGAATAATGGTAGATTTTACCATCTCTGAGAGTTGCCCTGCTGTA
CTTTGGATAAACTGGGTCCTTAAGGTTTGGAAAATTGCCTCTTTACAGGTATTTGGATGGAATT
CTATCATAAATTTTAATAATTTGCTTAACACAAAGTTTTGTTCAAGTGTTGGATTTTTTTAATT
GCTTCCTCTCAGGCCTTGGGCATTTGGAGACAAGTTCTTTGTGAGGTTTCAGCTTAACTCCTGG
TGGCATTTCTCAGGCACTTGCAAATGCCTTTGTCACGAATGCACAAAGGGAAAAGTCTCATCCT
AACACGTTTCCTTCCTTTCATTTTTAAGAAAAACCAACATGTCCCACAGGACCCCATTAACATA
CCTGCGTATGTTTATTCCTGCACTGCTGTTAGCTCCAATCTGCAAACAAGCGCTTAACGATTGG
TTCCTATGCGTTGCCTGGCTTCCAGTGCTTCCGCCGTCTGTGCGGTGGAAAAGCCCACTCGGTT
ACGGGCACCGGTAATGTTTCCTGGAAGGTTATGCATCTTGCGCTTTGGATTTCATCAAAAGGAA
ACATTTTACTCGGTTAGAGTAAACATTTTACTCGGGCAGAGTGTTTCTCAGCAGGTGTGACCCA
GCGCACCAGCGGCAATCTTCCGGTGTGAACAGTCTGGTGTGAATGCGCGCGCACATTTCCCAGC
CCTACCCGCAGCTGGCTCACCGTAAAGCTACTGAAAGCTAACTCTGGTGCAAAACTCGGATGAT
GTGTGCGGAAATGAGCAAATCCCACAGGGCCCGGAGTGGGGGGGAGACAGCAAGACTGGTTTTC
CTTCCAGAGATGTTAGCTCTTCCTCTATTGGTGGTTTCCTGGCTGAGCTCTCCGGCTCGCTCAT
CTCCAATGCCCCGCAGACCTCAGCATCCCCTTTCCATATGCCAGGGCCTCCCCATGTCTCCTCC
TGAGACACCCCACTCATCTGGATGCTTCTCAGTCTCTTGTGGCGGGTTTCAGAGTTTACAAACA
GGTTTCCTCATGGACACAAGCATTGTAGGAGGTGTAAATAAAGATCTGACAAACCACACTTTAT
TAAGAGGCGACAGGAAGCCAGTCAGCGTATAATAATACCTGTTTACAACATGAAACAAAGGCGA
TTATGGTTTTATTAAGAAACATCTGTAAGCTCTTTCTTAAACTGGTTTAGCAATAAGAGTTTTA
TAAAGTGTTTCAGCTGGGGATTTATTGTAGGTGTGTTTAATTATATAAATGTTCTTTATAGACC
CCATGGCAGTACTGAGGTTGCAAAACAGAGCTGTTCTGATGAAGGTAAGGTCTGGCATTGTTAT
AGAGTTTTCTTCAACATAAAAGACTTCTGTGGTACTGTTTATTTAAGACTTCCCAGCTAATGAG
TTATTTAGTGTTTTCTCGAGTACAACACCCAGGGACTTGAACCCTGGTACCTTTGTGATCCGAA
CTTCAACTCCCACCTACTGGATAGTGTGTCACACTTTGTTTTTTTATTGCAGTAGACAGCCTCG
AAAGACGGGTTTGTTTGCATGGAAAGCATTCACATGTATCCATTCTGAACAGCAGTCTTGATAT
TTATTAGGTCCTACACATAAGACCAAACCCAGTTAAAACCGTTTCTGAATCTCAGTTTATTTGC
TCCATACCTCTCGCTGGAAATTTCAGTTTTTTTCTTTGCATTTTTATGTAATTCTGCCATTGGT
GTGTGTTAGAATCATTTGCTCCTTTTTTGGTTAATGGAACCTTAAAAATATGGCTGTAAATAAA
AATGTGCCCTGTAGTTTTGTTTGTTGCCTGAATAGTTTCTGCGGATTGTGTCTGCTTTTTCCTT
AAGGAATTTTTTGTGTAGATTATACTCTTACAAGTAGGATAAATTATGAAGTTTTTGAGTTGTT
TGGGTTTGTAATAACATTTCAACGTAGATCTTATTTGCCGACGCTACTTTCGAACCGCAGGACA
TGCACTCGCTATAGTGATATGTACGTTTTTTTCTGATGCTATAATATATGATATTGTCAAGATA
TGCTTAATAATTTCCATAAGACTGAGTTTTATTTACAAAACATAAGACCAGATAATTTGTAAAC
CAGTGTTACTAAGATGTATCAGTAATTAAAATACAACCTAGGAGCTTTGGTTTGGTGTCTGGTT
GTGCTTTGTTTGAAGGGATAGAAAGTGTCTTTTCGGTACTTTCATTAAACTTTTGAAATGTTTG
TATACTTCGTGTGTGAGCCATTTTGAAGTTTATGCAAGTTCTAAGCAATAACCTGCATGTTCTA
CCTGGACAGCACCCTTCGTCAGTCTCCTTCAGTATTCAGAGTGACACAAATGACTATTGTGTAA
CTCCCCTCTCCCAGTGGACACCTTGGGAGTCTCCCTGTTAAAACACTACTGTAATGTGGTGCAA
AACTTTGTATTTTGTGAAAGAAAAATAAAGCCACACTTATTTAGTGCAAA

hide sequence

RefSeq Acc Id:

XM_006233246 ⟹ XP_006233308

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,341,360 (-)	NCBI
Rnor_6.0	2	224,768,034 - 224,824,511 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI

Sequence:

show sequence

AAACCCATCAGTTGCCCTTTCATCCCCTTCTCGATAAAGCAAACCATGCCGATCTTTTGCATAG
CGTCTGGGCATATAAAGCAGAATTCACCATTGGAAAAGGGTTTTGGTTACGTGGCGAGCCGGGA
CGCTGACCGCCGCGGGGGCGGACTCACATACTTCTCCCCACTCGTGAGGCAATGGTCTATGACT
TTGGCTTAAATGATTCTTAGAAATTATCCGACCAACTCTTTCAATTTATAGATGAGAAAACTGA
GTCAAAAAGAAACAGGTTGAAGGACGATGGAGGCCAACACTAACGTGGTCATCGGCACCGTCTG
CTGCAGCTTTGTCACTTTTCAGCTTCTTTTCCATTTCATAAGTTGCTGGTTTTCAGCAAGAGTC
TCTCTGGGCTATAACAGTCTCAGCACCGAGAAGAAGATCGAATGGAACTCGAGGGTAGTGTCCA
CGTGCCACTCTATGCTGGTTGGGATTTTTGGTTTATACCTCTTCTTCTTCGATGAAGCTACTAT
AGCTGATCCACTCTGGGGTGATCCATCACTTGTGAAAATAAATATTTCGACTGCTTCAGGCTAC
CTCATTTCTGATTTATTGATTATACTTTTTAATTGGAAAGTGATCGGAGACAAATTTTTTATAA
TTCACCATTGCGCAGGACTAATTGCATACTACTTTGTATTGAAAATTGGAGTGCTTGCATACAT
TGCCAATTTCCGCCTGCTTGCTGAGCTTTCCAGCCCCTTTGTAAACCAGAGATGGTTCTTTGAA
GTCCTGAAGTACCCCAAGTTTTCCAAAGTCAATGTCATCAATGGAATTCTTATGACCGTGGTCT
TTTTCATCGTGCGGATCATCGCGATACCTCCAATGTACTTCTACGTTTACTCCGTGTACGGAAC
AGAACCCTACATAAGGCTTGGATCTGTAGTCCATTTTGTCTGGATCTCTTCTTGTATTGTTTTA
GATGTGATGAACATCATGTGGATGATCAAAATCACAAAAGGATGCATGAAAGTCATCTCTCTCA
TCAGACAAGAGAAAGCCAAGGACAGCCTTCAGAATGGAAAACTCGATTAAAGGCGGCTTCATCA
GACAGCTGTGTCCACAGACCATCTTCATTCCGCTGTCTTGTCTGATAGGACGAGTTCTGTGCCG
GCCGCTGTCAGGCAGTGTTGTTACTGTGGCGCTCTCAGTGTTTTCGTTTCTCCTTTCTTTCCTC
TTTAGACAGGAGAAAATGCAATTTAGTTCTCATTTCAGGATTTCTTCTTTGCTTCTATATTTTT
AGGCATGGATGGAAATCGAAAGGTTTAAATAAAAGTTGTAAGTAGAGTGGTAAAACTTTTCTGA
ACTCTCAGTGTACGTGAAGGGTAGAAATGGTTTGGTGATTTGGTGGCCTCTGTCCACCACCCAT
TTTGCTGAAGGAATGAGACCGTGTGTGAGCAGCTGTCCGTTGTGTTCTTTGCTAATGTCAGTGC
CTGTGCAAGGCCTCATGTCTAAGTTGCCAAGATGCCCAGGCCACCGGAAATGACACAGTGTCAT
TGGAATATGCAGTCATCTGTTATGATGGAGTATTTCTCATGTTGATAATATCCTATTTGAAAAT
ACTTTATGCATTTTAAGATTTCAGATGCTGCTTTATTTCTGTCTTTAGTGCTTTATCCAATTAT
ATTTTTAAAATGTTATAGTGAGGCAAGGTTTAAGACCCATCTTGTGGCCCATTTGGTCGAATGT
CTTCTGAAAGTGAATACCAGTAGATGACTACTACTTGGGCTGATAGGAGGACCCCTAAGAACAG
GTCCTGAACACTGCGGCCCTCCCCTCTGGTGCCTTGTACTTTCTCCAATGAGGATTATATTCTT
GCAGAATCTTCCCAACTTCCAAGTCTGACACCAGAACATCTGGAACGCTTCTGAAATCAGCCTT
GTGTTGTTGCTGAGACTAAAACTGCAGATAAGGCAGAGTTTGTGCTTTACTCATAGATTTTACT
CAGGCTTGCTCAGTTTATCTTTGCTGTTTTTTTTTTTTTTTTCTTAAAGGGAAGGAAGGAAGGA
AGGAAGGAAGGTGACTTAACCCAAGTATTCTGATTATCAAAACTGTCATTCTATGAGAAAAAAG
TAAATGTGTGCGTGCGTGTGTGTGGGGGTGTTTTTCTTTTTACTTTGATTCTTGTAATCCAAAT
ATAGAATTATAGCTATTATTGCTATTACTTAGCTATTATTGCCTTTATTTATTTTGTCTTCTGA
AGCACTTGACTTTAATGATTGTTCTTAAGAAACAGACTTAATCCAATTAGTGGTGAATACTTGA
ATTTAACTGAACCTAAACCAAAAGATCTAATCCATTTAGAGTCTCAGACTGAAGGAGAGCGTTT
GACTCTCTCATTATTCATCTTATGACGACGAAAGGAGACTAGTGGAATGTAATCAAAACATTTA
ATGTAATGTAGTGTAATTTAATTGTCCAGTACAGATAGAGTCTGGCAAGTTCTGGTATGTTTAA
AGATGGGAATTGAAATTCCAGTCAATCAAATGATAAAAATCAAGTTGATTGTCTTGTGCTTGGT
GTGTTTACTTTGAAAGATAAAGTCACATAAAAGACAGGCCTTTGTCTTCAAAGCAGCTGATGTC
GCACTGGTAATGGCTGGCTAAGTTTATTGCTGTCTCCATCCTAGACTTGCAAGTGTGTATTGGT
TGTGTAGGAATGCAAATGAGTTTATCGCTTGTGGCTCTTTTACAAGAAAATGGGCTTTTTTTTT
TTTAAAGAGAGAAGACACTTAAAAAACTATTTTGGAAATTCACTAAGAAAGGGATAAACCTCGA
GGTAAATATTTTTGGCTTTTTGGATATTGCTACAATTCTGAACACAGATTTTAAACTTGCCATC
AAAATGATGGTAGCATGTAGTTCTGAGTCTTCATGGAGGCAATGAGTGTTTCCTGCTTAAAAGG
TCATATGTATCATTGATCATTGCTGTTATCATCGATTGATTATCATTGATCAATAGAACCGGTT
AGTCTGTTCAGAATACCAAACATTGAACCAAGATTTGCCATTGCCTTTGTTAGCAATCCTTATT
AGCTGCAGCATCTGGAGTTCCAACTCTCCACATCCTTTATAGAAGGACAAGCATTGGAAATATC
CTGCATACTGCCACTGCAGGCAGCGCCCACCGGGGCTATATCTTGCTGTTCTGTGATCGTATTT
ATTAAAACAATGACATTTTCATTTATTGAATGACAAATTTTTGCTAGATATTTTAGATATAAGT
ATTTTGGCTACGTGGATTAATTTAAATGAGTCTATTAGGCATTCTGATATTTAACAAGTCTTAA
AATATTTATAGAAAATAAAAGCAAATTGGTATAAATTTTTAAGCAACTCTATTTTTCTAGAGAA
GATTAGTGACAATCTGAATATGTAGTATTCTAGAAAACAAACTTTAAAAAAGGAGCAAAAATAA
ACTGATAACATGCAAGATCGGGGATCCTGCATTCGATATTTTATGTGTGAGACTTAAAATTTTT
CGAGCTTGGGTTCATAGAATTCGCATTCTGTGTCTAAAATCACTTGAGGGATTGTTTGCATTTA
TTTGAAATTCAAAATGGAGTTATGCATGCATGCAAAGAAATTAACTCAAAGTACTCTAGTACGT
TGGCTTTTTAAAATAGAAGTGGGTTTTTTTCTGTTTTGTTTCGCTTGTTTTCTGTTATTTCATG
GACCCGTCATGTGTTAAGAGGAATAATGGTAGATTTTACCATCTCTGAGAGTTGCCCTGCTGTA
CTTTGGATAAACTGGGTCCTTAAGGTTTGGAAAATTGCCTCTTTACAGGTATTTGGATGGAATT
CTATCATAAATTTTAATAATTTGCTTAACACAAAGTTTTGTTCAAGTGTTGGATTTTTTTAATT
GCTTCCTCTCAGGCCTTGGGCATTTGGAGACAAGTTCTTTGTGAGGTTTCAGCTTAACTCCTGG
TGGCATTTCTCAGGCACTTGCAAATGCCTTTGTCACGAATGCACAAAGGGAAAAGTCTCATCCT
AACACGTTTCCTTCCTTTCATTTTTAAGAAAAACCAACATGTCCCACAGGACCCCATTAACATA
CCTGCGTATGTTTATTCCTGCACTGCTGTTAGCTCCAATCTGCAAACAAGCGCTTAACGATTGG
TTCCTATGCGTTGCCTGGCTTCCAGTGCTTCCGCCGTCTGTGCGGTGGAAAAGCCCACTCGGTT
ACGGGCACCGGTAATGTTTCCTGGAAGGTTATGCATCTTGCGCTTTGGATTTCATCAAAAGGAA
ACATTTTACTCGGTTAGAGTAAACATTTTACTCGGGCAGAGTGTTTCTCAGCAGGTGTGACCCA
GCGCACCAGCGGCAATCTTCCGGTGTGAACAGTCTGGTGTGAATGCGCGCGCACATTTCCCAGC
CCTACCCGCAGCTGGCTCACCGTAAAGCTACTGAAAGCTAACTCTGGTGCAAAACTCGGATGAT
GTGTGCGGAAATGAGCAAATCCCACAGGGCCCGGAGTGGGGGGGAGACAGCAAGACTGGTTTTC
CTTCCAGAGATGTTAGCTCTTCCTCTATTGGTGGTTTCCTGGCTGAGCTCTCCGGCTCGCTCAT
CTCCAATGCCCCGCAGACCTCAGCATCCCCTTTCCATATGCCAGGGCCTCCCCATGTCTCCTCC
TGAGACACCCCACTCATCTGGATGCTTCTCAGTCTCTTGTGGCGGGTTTCAGAGTTTACAAACA
GGTTTCCTCATGGACACAAGCATTGTAGGAGGTGTAAATAAAGATCTGACAAACCACACTTTAT
TAAGAGGCGACAGGAAGCCAGTCAGCGTATAATAATACCTGTTTACAACATGAAACAAAGGCGA
TTATGGTTTTATTAAGAAACATCTGTAAGCTCTTTCTTAAACTGGTTTAGCAATAAGAGTTTTA
TAAAGTGTTTCAGCTGGGGATTTATTGTAGGTGTGTTTAATTATATAAATGTTCTTTATAGACC
CCATGGCAGTACTGAGGTTGCAAAACAGAGCTGTTCTGATGAAGGTAAGGTCTGGCATTGTTAT
AGAGTTTTCTTCAACATAAAAGACTTCTGTGGTACTGTTTATTTAAGACTTCCCAGCTAATGAG
TTATTTAGTGTTTTCTCGAGTACAACACCCAGGGACTTGAACCCTGGTACCTTTGTGATCCGAA
CTTCAACTCCCACCTACTGGATAGTGTGTCACACTTTGTTTTTTTATTGCAGTAGACAGCCTCG
AAAGACGGGTTTGTTTGCATGGAAAGCATTCACATGTATCCATTCTGAACAGCAGTCTTGATAT
TTATTAGGTCCTACACATAAGACCAAACCCAGTTAAAACCGTTTCTGAATCTCAGTTTATTTGC
TCCATACCTCTCGCTGGAAATTTCAGTTTTTTTCTTTGCATTTTTATGTAATTCTGCCATTGGT
GTGTGTTAGAATCATTTGCTCCTTTTTTGGTTAATGGAACCTTAAAAATATGGCTGTAAATAAA
AATGTGCCCTGTAGTTTTGTTTGTTGCCTGAATAGTTTCTGCGGATTGTGTCTGCTTTTTCCTT
AAGGAATTTTTTGTGTAGATTATACTCTTACAAGTAGGATAAATTATGAAGTTTTTGAGTTGTT
TGGGTTTGTAATAACATTTCAACGTAGATCTTATTTGCCGACGCTACTTTCGAACCGCAGGACA
TGCACTCGCTATAGTGATATGTACGTTTTTTTCTGATGCTATAATATATGATATTGTCAAGATA
TGCTTAATAATTTCCATAAGACTGAGTTTTATTTACAAAACATAAGACCAGATAATTTGTAAAC
CAGTGTTACTAAGATGTATCAGTAATTAAAATACAACCTAGGAGCTTTGGTTTGGTGTCTGGTT
GTGCTTTGTTTGAAGGGATAGAAAGTGTCTTTTCGGTACTTTCATTAAACTTTTGAAATGTTTG
TATACTTCGTGTGTGAGCCATTTTGAAGTTTATGCAAGTTCTAAGCAATAACCTGCATGTTCTA
CCTGGACAGCACCCTTCGTCAGTCTCCTTCAGTATTCAGAGTGACACAAATGACTATTGTGTAA
CTCCCCTCTCCCAGTGGACACCTTGGGAGTCTCCCTGTTAAAACACTACTGTAATGTGGTGCAA
AACTTTGTATTTTGTGAAAGAAAAATAAAGCCACACTTATTTAGTGCAAA

hide sequence

RefSeq Acc Id:

XM_006233251 ⟹ XP_006233313

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,360,156 (-)	NCBI
Rnor_6.0	2	224,768,034 - 224,843,198 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI

Sequence:

show sequence

GGGTGGGGCCTTGTGGAGTCCTGGGAAGCTAGAGCAGCATCAGTCCTGGTAAAGACTGAAAAGT
ATGGACCAGAAGATTGAAGCGTCCCTGTAAGACCCAAGAAGAAAGACCACCTCGTTCAACTTTT
TGCCCACCCTGTGACAAGAAAAGAAAAAGGGACCAGAAAAGGGAATTTTCAGACGTTCTGCTTA
AAGGTTGAAGGACGATGGAGGCCAACACTAACGTGGTCATCGGCACCGTCTGCTGCAGCTTTGT
CACTTTTCAGCTTCTTTTCCATTTCATAAGTTGCTGGTTTTCAGCAAGAGTCTCTCTGGGCTAT
AACAGTCTCAGCACCGAGAAGAAGATCGAATGGAACTCGAGGGTAGTGTCCACGTGCCACTCTA
TGCTGGTTGGGATTTTTGGTTTATACCTCTTCTTCTTCGATGAAGCTACTATAGCTGATCCACT
CTGGGGTGATCCATCACTTGTGAAAATAAATATTTCGACTGCTTCAGGCTACCTCATTTCTGAT
TTATTGATTATACTTTTTAATTGGAAAGTGATCGGAGACAAATTTTTTATAATTCACCATTGCG
CAGGACTAATTGCATACTACTTTGTATTGAAAATTGGAGTGCTTGCATACATTGCCAATTTCCG
CCTGCTTGCTGAGCTTTCCAGCCCCTTTGTAAACCAGAGATGGTTCTTTGAAGTCCTGAAGTAC
CCCAAGTTTTCCAAAGTCAATGTCATCAATGGAATTCTTATGACCGTGGTCTTTTTCATCGTGC
GGATCATCGCGATACCTCCAATGTACTTCTACGTTTACTCCGTGTACGGAACAGAACCCTACAT
AAGGCTTGGATCTGTAGTCCATTTTGTCTGGATCTCTTCTTGTATTGTTTTAGATGTGATGAAC
ATCATGTGGATGATCAAAATCACAAAAGGATGCATGAAAGTCATCTCTCTCATCAGACAAGAGA
AAGCCAAGGACAGCCTTCAGAATGGAAAACTCGATTAAAGGCGGCTTCATCAGACAGCTGTGTC
CACAGACCATCTTCATTCCGCTGTCTTGTCTGATAGGACGAGTTCTGTGCCGGCCGCTGTCAGG
CAGTGTTGTTACTGTGGCGCTCTCAGTGTTTTCGTTTCTCCTTTCTTTCCTCTTTAGACAGGAG
AAAATGCAATTTAGTTCTCATTTCAGGATTTCTTCTTTGCTTCTATATTTTTAGGCATGGATGG
AAATCGAAAGGTTTAAATAAAAGTTGTAAGTAGAGTGGTAAAACTTTTCTGAACTCTCAGTGTA
CGTGAAGGGTAGAAATGGTTTGGTGATTTGGTGGCCTCTGTCCACCACCCATTTTGCTGAAGGA
ATGAGACCGTGTGTGAGCAGCTGTCCGTTGTGTTCTTTGCTAATGTCAGTGCCTGTGCAAGGCC
TCATGTCTAAGTTGCCAAGATGCCCAGGCCACCGGAAATGACACAGTGTCATTGGAATATGCAG
TCATCTGTTATGATGGAGTATTTCTCATGTTGATAATATCCTATTTGAAAATACTTTATGCATT
TTAAGATTTCAGATGCTGCTTTATTTCTGTCTTTAGTGCTTTATCCAATTATATTTTTAAAATG
TTATAGTGAGGCAAGGTTTAAGACCCATCTTGTGGCCCATTTGGTCGAATGTCTTCTGAAAGTG
AATACCAGTAGATGACTACTACTTGGGCTGATAGGAGGACCCCTAAGAACAGGTCCTGAACACT
GCGGCCCTCCCCTCTGGTGCCTTGTACTTTCTCCAATGAGGATTATATTCTTGCAGAATCTTCC
CAACTTCCAAGTCTGACACCAGAACATCTGGAACGCTTCTGAAATCAGCCTTGTGTTGTTGCTG
AGACTAAAACTGCAGATAAGGCAGAGTTTGTGCTTTACTCATAGATTTTACTCAGGCTTGCTCA
GTTTATCTTTGCTGTTTTTTTTTTTTTTTTCTTAAAGGGAAGGAAGGAAGGAAGGAAGGAAGGT
GACTTAACCCAAGTATTCTGATTATCAAAACTGTCATTCTATGAGAAAAAAGTAAATGTGTGCG
TGCGTGTGTGTGGGGGTGTTTTTCTTTTTACTTTGATTCTTGTAATCCAAATATAGAATTATAG
CTATTATTGCTATTACTTAGCTATTATTGCCTTTATTTATTTTGTCTTCTGAAGCACTTGACTT
TAATGATTGTTCTTAAGAAACAGACTTAATCCAATTAGTGGTGAATACTTGAATTTAACTGAAC
CTAAACCAAAAGATCTAATCCATTTAGAGTCTCAGACTGAAGGAGAGCGTTTGACTCTCTCATT
ATTCATCTTATGACGACGAAAGGAGACTAGTGGAATGTAATCAAAACATTTAATGTAATGTAGT
GTAATTTAATTGTCCAGTACAGATAGAGTCTGGCAAGTTCTGGTATGTTTAAAGATGGGAATTG
AAATTCCAGTCAATCAAATGATAAAAATCAAGTTGATTGTCTTGTGCTTGGTGTGTTTACTTTG
AAAGATAAAGTCACATAAAAGACAGGCCTTTGTCTTCAAAGCAGCTGATGTCGCACTGGTAATG
GCTGGCTAAGTTTATTGCTGTCTCCATCCTAGACTTGCAAGTGTGTATTGGTTGTGTAGGAATG
CAAATGAGTTTATCGCTTGTGGCTCTTTTACAAGAAAATGGGCTTTTTTTTTTTTAAAGAGAGA
AGACACTTAAAAAACTATTTTGGAAATTCACTAAGAAAGGGATAAACCTCGAGGTAAATATTTT
TGGCTTTTTGGATATTGCTACAATTCTGAACACAGATTTTAAACTTGCCATCAAAATGATGGTA
GCATGTAGTTCTGAGTCTTCATGGAGGCAATGAGTGTTTCCTGCTTAAAAGGTCATATGTATCA
TTGATCATTGCTGTTATCATCGATTGATTATCATTGATCAATAGAACCGGTTAGTCTGTTCAGA
ATACCAAACATTGAACCAAGATTTGCCATTGCCTTTGTTAGCAATCCTTATTAGCTGCAGCATC
TGGAGTTCCAACTCTCCACATCCTTTATAGAAGGACAAGCATTGGAAATATCCTGCATACTGCC
ACTGCAGGCAGCGCCCACCGGGGCTATATCTTGCTGTTCTGTGATCGTATTTATTAAAACAATG
ACATTTTCATTTATTGAATGACAAATTTTTGCTAGATATTTTAGATATAAGTATTTTGGCTACG
TGGATTAATTTAAATGAGTCTATTAGGCATTCTGATATTTAACAAGTCTTAAAATATTTATAGA
AAATAAAAGCAAATTGGTATAAATTTTTAAGCAACTCTATTTTTCTAGAGAAGATTAGTGACAA
TCTGAATATGTAGTATTCTAGAAAACAAACTTTAAAAAAGGAGCAAAAATAAACTGATAACATG
CAAGATCGGGGATCCTGCATTCGATATTTTATGTGTGAGACTTAAAATTTTTCGAGCTTGGGTT
CATAGAATTCGCATTCTGTGTCTAAAATCACTTGAGGGATTGTTTGCATTTATTTGAAATTCAA
AATGGAGTTATGCATGCATGCAAAGAAATTAACTCAAAGTACTCTAGTACGTTGGCTTTTTAAA
ATAGAAGTGGGTTTTTTTCTGTTTTGTTTCGCTTGTTTTCTGTTATTTCATGGACCCGTCATGT
GTTAAGAGGAATAATGGTAGATTTTACCATCTCTGAGAGTTGCCCTGCTGTACTTTGGATAAAC
TGGGTCCTTAAGGTTTGGAAAATTGCCTCTTTACAGGTATTTGGATGGAATTCTATCATAAATT
TTAATAATTTGCTTAACACAAAGTTTTGTTCAAGTGTTGGATTTTTTTAATTGCTTCCTCTCAG
GCCTTGGGCATTTGGAGACAAGTTCTTTGTGAGGTTTCAGCTTAACTCCTGGTGGCATTTCTCA
GGCACTTGCAAATGCCTTTGTCACGAATGCACAAAGGGAAAAGTCTCATCCTAACACGTTTCCT
TCCTTTCATTTTTAAGAAAAACCAACATGTCCCACAGGACCCCATTAACATACCTGCGTATGTT
TATTCCTGCACTGCTGTTAGCTCCAATCTGCAAACAAGCGCTTAACGATTGGTTCCTATGCGTT
GCCTGGCTTCCAGTGCTTCCGCCGTCTGTGCGGTGGAAAAGCCCACTCGGTTACGGGCACCGGT
AATGTTTCCTGGAAGGTTATGCATCTTGCGCTTTGGATTTCATCAAAAGGAAACATTTTACTCG
GTTAGAGTAAACATTTTACTCGGGCAGAGTGTTTCTCAGCAGGTGTGACCCAGCGCACCAGCGG
CAATCTTCCGGTGTGAACAGTCTGGTGTGAATGCGCGCGCACATTTCCCAGCCCTACCCGCAGC
TGGCTCACCGTAAAGCTACTGAAAGCTAACTCTGGTGCAAAACTCGGATGATGTGTGCGGAAAT
GAGCAAATCCCACAGGGCCCGGAGTGGGGGGGAGACAGCAAGACTGGTTTTCCTTCCAGAGATG
TTAGCTCTTCCTCTATTGGTGGTTTCCTGGCTGAGCTCTCCGGCTCGCTCATCTCCAATGCCCC
GCAGACCTCAGCATCCCCTTTCCATATGCCAGGGCCTCCCCATGTCTCCTCCTGAGACACCCCA
CTCATCTGGATGCTTCTCAGTCTCTTGTGGCGGGTTTCAGAGTTTACAAACAGGTTTCCTCATG
GACACAAGCATTGTAGGAGGTGTAAATAAAGATCTGACAAACCACACTTTATTAAGAGGCGACA
GGAAGCCAGTCAGCGTATAATAATACCTGTTTACAACATGAAACAAAGGCGATTATGGTTTTAT
TAAGAAACATCTGTAAGCTCTTTCTTAAACTGGTTTAGCAATAAGAGTTTTATAAAGTGTTTCA
GCTGGGGATTTATTGTAGGTGTGTTTAATTATATAAATGTTCTTTATAGACCCCATGGCAGTAC
TGAGGTTGCAAAACAGAGCTGTTCTGATGAAGGTAAGGTCTGGCATTGTTATAGAGTTTTCTTC
AACATAAAAGACTTCTGTGGTACTGTTTATTTAAGACTTCCCAGCTAATGAGTTATTTAGTGTT
TTCTCGAGTACAACACCCAGGGACTTGAACCCTGGTACCTTTGTGATCCGAACTTCAACTCCCA
CCTACTGGATAGTGTGTCACACTTTGTTTTTTTATTGCAGTAGACAGCCTCGAAAGACGGGTTT
GTTTGCATGGAAAGCATTCACATGTATCCATTCTGAACAGCAGTCTTGATATTTATTAGGTCCT
ACACATAAGACCAAACCCAGTTAAAACCGTTTCTGAATCTCAGTTTATTTGCTCCATACCTCTC
GCTGGAAATTTCAGTTTTTTTCTTTGCATTTTTATGTAATTCTGCCATTGGTGTGTGTTAGAAT
CATTTGCTCCTTTTTTGGTTAATGGAACCTTAAAAATATGGCTGTAAATAAAAATGTGCCCTGT
AGTTTTGTTTGTTGCCTGAATAGTTTCTGCGGATTGTGTCTGCTTTTTCCTTAAGGAATTTTTT
GTGTAGATTATACTCTTACAAGTAGGATAAATTATGAAGTTTTTGAGTTGTTTGGGTTTGTAAT
AACATTTCAACGTAGATCTTATTTGCCGACGCTACTTTCGAACCGCAGGACATGCACTCGCTAT
AGTGATATGTACGTTTTTTTCTGATGCTATAATATATGATATTGTCAAGATATGCTTAATAATT
TCCATAAGACTGAGTTTTATTTACAAAACATAAGACCAGATAATTTGTAAACCAGTGTTACTAA
GATGTATCAGTAATTAAAATACAACCTAGGAGCTTTGGTTTGGTGTCTGGTTGTGCTTTGTTTG
AAGGGATAGAAAGTGTCTTTTCGGTACTTTCATTAAACTTTTGAAATGTTTGTATACTTCGTGT
GTGAGCCATTTTGAAGTTTATGCAAGTTCTAAGCAATAACCTGCATGTTCTACCTGGACAGCAC
CCTTCGTCAGTCTCCTTCAGTATTCAGAGTGACACAAATGACTATTGTGTAACTCCCCTCTCCC
AGTGGACACCTTGGGAGTCTCCCTGTTAAAACACTACTGTAATGTGGTGCAAAACTTTGTATTT
TGTGAAAGAAAAATAAAGCCACACTTATTTAGTGCAAA

hide sequence

RefSeq Acc Id:

XM_006233252 ⟹ XP_006233314

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,360,156 (-)	NCBI
Rnor_6.0	2	224,768,034 - 224,843,198 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI

Sequence:

show sequence

GGGTGGGGCCTTGTGGAGTCCTGGGAAGCTAGAGCAGCATCAGTCCTGGTAAAGACTGAAAAGT
ATGGACCAGAAGATTGAAGCGTCCCTGTAAGACCCAAGAAGAAAGACCACCTCGTTCAACTTTT
TGCCCACCCTGTGACAAGGTTGAAGGACGATGGAGGCCAACACTAACGTGGTCATCGGCACCGT
CTGCTGCAGCTTTGTCACTTTTCAGCTTCTTTTCCATTTCATAAGTTGCTGGTTTTCAGCAAGA
GTCTCTCTGGGCTATAACAGTCTCAGCACCGAGAAGAAGATCGAATGGAACTCGAGGGTAGTGT
CCACGTGCCACTCTATGCTGGTTGGGATTTTTGGTTTATACCTCTTCTTCTTCGATGAAGCTAC
TATAGCTGATCCACTCTGGGGTGATCCATCACTTGTGAAAATAAATATTTCGACTGCTTCAGGC
TACCTCATTTCTGATTTATTGATTATACTTTTTAATTGGAAAGTGATCGGAGACAAATTTTTTA
TAATTCACCATTGCGCAGGACTAATTGCATACTACTTTGTATTGAAAATTGGAGTGCTTGCATA
CATTGCCAATTTCCGCCTGCTTGCTGAGCTTTCCAGCCCCTTTGTAAACCAGAGATGGTTCTTT
GAAGTCCTGAAGTACCCCAAGTTTTCCAAAGTCAATGTCATCAATGGAATTCTTATGACCGTGG
TCTTTTTCATCGTGCGGATCATCGCGATACCTCCAATGTACTTCTACGTTTACTCCGTGTACGG
AACAGAACCCTACATAAGGCTTGGATCTGTAGTCCATTTTGTCTGGATCTCTTCTTGTATTGTT
TTAGATGTGATGAACATCATGTGGATGATCAAAATCACAAAAGGATGCATGAAAGTCATCTCTC
TCATCAGACAAGAGAAAGCCAAGGACAGCCTTCAGAATGGAAAACTCGATTAAAGGCGGCTTCA
TCAGACAGCTGTGTCCACAGACCATCTTCATTCCGCTGTCTTGTCTGATAGGACGAGTTCTGTG
CCGGCCGCTGTCAGGCAGTGTTGTTACTGTGGCGCTCTCAGTGTTTTCGTTTCTCCTTTCTTTC
CTCTTTAGACAGGAGAAAATGCAATTTAGTTCTCATTTCAGGATTTCTTCTTTGCTTCTATATT
TTTAGGCATGGATGGAAATCGAAAGGTTTAAATAAAAGTTGTAAGTAGAGTGGTAAAACTTTTC
TGAACTCTCAGTGTACGTGAAGGGTAGAAATGGTTTGGTGATTTGGTGGCCTCTGTCCACCACC
CATTTTGCTGAAGGAATGAGACCGTGTGTGAGCAGCTGTCCGTTGTGTTCTTTGCTAATGTCAG
TGCCTGTGCAAGGCCTCATGTCTAAGTTGCCAAGATGCCCAGGCCACCGGAAATGACACAGTGT
CATTGGAATATGCAGTCATCTGTTATGATGGAGTATTTCTCATGTTGATAATATCCTATTTGAA
AATACTTTATGCATTTTAAGATTTCAGATGCTGCTTTATTTCTGTCTTTAGTGCTTTATCCAAT
TATATTTTTAAAATGTTATAGTGAGGCAAGGTTTAAGACCCATCTTGTGGCCCATTTGGTCGAA
TGTCTTCTGAAAGTGAATACCAGTAGATGACTACTACTTGGGCTGATAGGAGGACCCCTAAGAA
CAGGTCCTGAACACTGCGGCCCTCCCCTCTGGTGCCTTGTACTTTCTCCAATGAGGATTATATT
CTTGCAGAATCTTCCCAACTTCCAAGTCTGACACCAGAACATCTGGAACGCTTCTGAAATCAGC
CTTGTGTTGTTGCTGAGACTAAAACTGCAGATAAGGCAGAGTTTGTGCTTTACTCATAGATTTT
ACTCAGGCTTGCTCAGTTTATCTTTGCTGTTTTTTTTTTTTTTTTCTTAAAGGGAAGGAAGGAA
GGAAGGAAGGAAGGTGACTTAACCCAAGTATTCTGATTATCAAAACTGTCATTCTATGAGAAAA
AAGTAAATGTGTGCGTGCGTGTGTGTGGGGGTGTTTTTCTTTTTACTTTGATTCTTGTAATCCA
AATATAGAATTATAGCTATTATTGCTATTACTTAGCTATTATTGCCTTTATTTATTTTGTCTTC
TGAAGCACTTGACTTTAATGATTGTTCTTAAGAAACAGACTTAATCCAATTAGTGGTGAATACT
TGAATTTAACTGAACCTAAACCAAAAGATCTAATCCATTTAGAGTCTCAGACTGAAGGAGAGCG
TTTGACTCTCTCATTATTCATCTTATGACGACGAAAGGAGACTAGTGGAATGTAATCAAAACAT
TTAATGTAATGTAGTGTAATTTAATTGTCCAGTACAGATAGAGTCTGGCAAGTTCTGGTATGTT
TAAAGATGGGAATTGAAATTCCAGTCAATCAAATGATAAAAATCAAGTTGATTGTCTTGTGCTT
GGTGTGTTTACTTTGAAAGATAAAGTCACATAAAAGACAGGCCTTTGTCTTCAAAGCAGCTGAT
GTCGCACTGGTAATGGCTGGCTAAGTTTATTGCTGTCTCCATCCTAGACTTGCAAGTGTGTATT
GGTTGTGTAGGAATGCAAATGAGTTTATCGCTTGTGGCTCTTTTACAAGAAAATGGGCTTTTTT
TTTTTTAAAGAGAGAAGACACTTAAAAAACTATTTTGGAAATTCACTAAGAAAGGGATAAACCT
CGAGGTAAATATTTTTGGCTTTTTGGATATTGCTACAATTCTGAACACAGATTTTAAACTTGCC
ATCAAAATGATGGTAGCATGTAGTTCTGAGTCTTCATGGAGGCAATGAGTGTTTCCTGCTTAAA
AGGTCATATGTATCATTGATCATTGCTGTTATCATCGATTGATTATCATTGATCAATAGAACCG
GTTAGTCTGTTCAGAATACCAAACATTGAACCAAGATTTGCCATTGCCTTTGTTAGCAATCCTT
ATTAGCTGCAGCATCTGGAGTTCCAACTCTCCACATCCTTTATAGAAGGACAAGCATTGGAAAT
ATCCTGCATACTGCCACTGCAGGCAGCGCCCACCGGGGCTATATCTTGCTGTTCTGTGATCGTA
TTTATTAAAACAATGACATTTTCATTTATTGAATGACAAATTTTTGCTAGATATTTTAGATATA
AGTATTTTGGCTACGTGGATTAATTTAAATGAGTCTATTAGGCATTCTGATATTTAACAAGTCT
TAAAATATTTATAGAAAATAAAAGCAAATTGGTATAAATTTTTAAGCAACTCTATTTTTCTAGA
GAAGATTAGTGACAATCTGAATATGTAGTATTCTAGAAAACAAACTTTAAAAAAGGAGCAAAAA
TAAACTGATAACATGCAAGATCGGGGATCCTGCATTCGATATTTTATGTGTGAGACTTAAAATT
TTTCGAGCTTGGGTTCATAGAATTCGCATTCTGTGTCTAAAATCACTTGAGGGATTGTTTGCAT
TTATTTGAAATTCAAAATGGAGTTATGCATGCATGCAAAGAAATTAACTCAAAGTACTCTAGTA
CGTTGGCTTTTTAAAATAGAAGTGGGTTTTTTTCTGTTTTGTTTCGCTTGTTTTCTGTTATTTC
ATGGACCCGTCATGTGTTAAGAGGAATAATGGTAGATTTTACCATCTCTGAGAGTTGCCCTGCT
GTACTTTGGATAAACTGGGTCCTTAAGGTTTGGAAAATTGCCTCTTTACAGGTATTTGGATGGA
ATTCTATCATAAATTTTAATAATTTGCTTAACACAAAGTTTTGTTCAAGTGTTGGATTTTTTTA
ATTGCTTCCTCTCAGGCCTTGGGCATTTGGAGACAAGTTCTTTGTGAGGTTTCAGCTTAACTCC
TGGTGGCATTTCTCAGGCACTTGCAAATGCCTTTGTCACGAATGCACAAAGGGAAAAGTCTCAT
CCTAACACGTTTCCTTCCTTTCATTTTTAAGAAAAACCAACATGTCCCACAGGACCCCATTAAC
ATACCTGCGTATGTTTATTCCTGCACTGCTGTTAGCTCCAATCTGCAAACAAGCGCTTAACGAT
TGGTTCCTATGCGTTGCCTGGCTTCCAGTGCTTCCGCCGTCTGTGCGGTGGAAAAGCCCACTCG
GTTACGGGCACCGGTAATGTTTCCTGGAAGGTTATGCATCTTGCGCTTTGGATTTCATCAAAAG
GAAACATTTTACTCGGTTAGAGTAAACATTTTACTCGGGCAGAGTGTTTCTCAGCAGGTGTGAC
CCAGCGCACCAGCGGCAATCTTCCGGTGTGAACAGTCTGGTGTGAATGCGCGCGCACATTTCCC
AGCCCTACCCGCAGCTGGCTCACCGTAAAGCTACTGAAAGCTAACTCTGGTGCAAAACTCGGAT
GATGTGTGCGGAAATGAGCAAATCCCACAGGGCCCGGAGTGGGGGGGAGACAGCAAGACTGGTT
TTCCTTCCAGAGATGTTAGCTCTTCCTCTATTGGTGGTTTCCTGGCTGAGCTCTCCGGCTCGCT
CATCTCCAATGCCCCGCAGACCTCAGCATCCCCTTTCCATATGCCAGGGCCTCCCCATGTCTCC
TCCTGAGACACCCCACTCATCTGGATGCTTCTCAGTCTCTTGTGGCGGGTTTCAGAGTTTACAA
ACAGGTTTCCTCATGGACACAAGCATTGTAGGAGGTGTAAATAAAGATCTGACAAACCACACTT
TATTAAGAGGCGACAGGAAGCCAGTCAGCGTATAATAATACCTGTTTACAACATGAAACAAAGG
CGATTATGGTTTTATTAAGAAACATCTGTAAGCTCTTTCTTAAACTGGTTTAGCAATAAGAGTT
TTATAAAGTGTTTCAGCTGGGGATTTATTGTAGGTGTGTTTAATTATATAAATGTTCTTTATAG
ACCCCATGGCAGTACTGAGGTTGCAAAACAGAGCTGTTCTGATGAAGGTAAGGTCTGGCATTGT
TATAGAGTTTTCTTCAACATAAAAGACTTCTGTGGTACTGTTTATTTAAGACTTCCCAGCTAAT
GAGTTATTTAGTGTTTTCTCGAGTACAACACCCAGGGACTTGAACCCTGGTACCTTTGTGATCC
GAACTTCAACTCCCACCTACTGGATAGTGTGTCACACTTTGTTTTTTTATTGCAGTAGACAGCC
TCGAAAGACGGGTTTGTTTGCATGGAAAGCATTCACATGTATCCATTCTGAACAGCAGTCTTGA
TATTTATTAGGTCCTACACATAAGACCAAACCCAGTTAAAACCGTTTCTGAATCTCAGTTTATT
TGCTCCATACCTCTCGCTGGAAATTTCAGTTTTTTTCTTTGCATTTTTATGTAATTCTGCCATT
GGTGTGTGTTAGAATCATTTGCTCCTTTTTTGGTTAATGGAACCTTAAAAATATGGCTGTAAAT
AAAAATGTGCCCTGTAGTTTTGTTTGTTGCCTGAATAGTTTCTGCGGATTGTGTCTGCTTTTTC
CTTAAGGAATTTTTTGTGTAGATTATACTCTTACAAGTAGGATAAATTATGAAGTTTTTGAGTT
GTTTGGGTTTGTAATAACATTTCAACGTAGATCTTATTTGCCGACGCTACTTTCGAACCGCAGG
ACATGCACTCGCTATAGTGATATGTACGTTTTTTTCTGATGCTATAATATATGATATTGTCAAG
ATATGCTTAATAATTTCCATAAGACTGAGTTTTATTTACAAAACATAAGACCAGATAATTTGTA
AACCAGTGTTACTAAGATGTATCAGTAATTAAAATACAACCTAGGAGCTTTGGTTTGGTGTCTG
GTTGTGCTTTGTTTGAAGGGATAGAAAGTGTCTTTTCGGTACTTTCATTAAACTTTTGAAATGT
TTGTATACTTCGTGTGTGAGCCATTTTGAAGTTTATGCAAGTTCTAAGCAATAACCTGCATGTT
CTACCTGGACAGCACCCTTCGTCAGTCTCCTTCAGTATTCAGAGTGACACAAATGACTATTGTG
TAACTCCCCTCTCCCAGTGGACACCTTGGGAGTCTCCCTGTTAAAACACTACTGTAATGTGGTG
CAAAACTTTGTATTTTGTGAAAGAAAAATAAAGCCACACTTATTTAGTGCAAA

hide sequence

RefSeq Acc Id:

XM_006233253 ⟹ XP_006233315

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,340,897 (-)	NCBI
Rnor_6.0	2	224,768,034 - 224,824,172 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI

Sequence:

show sequence

GCCCCGCCCACTCTGGCCTGGGGTCGGAGCCGCGGCGAGCGCCAGCCCAGTCCGAGCGGCCGCG
TCCCCTTTAAGGAGCCGCTCTGCGGTAACCCGAGCCCGCAGTCCGGGCGGGCGCGGCGGCAGCG
CGAGCCTCGGCGACAGCTCCTTCAGGCTCCCCCGGCTTCCCGCGAGCATCTCGCGCGTGGCTCG
GGCCGGCGCAGCCCTCGGGCCGGCTGGATGATCAGGCGCCTGTGAGCCCCGCTGCGCTCTCCCC
GCCCCGCGCAGCCGCCGCCCGCGGGAGGCGTCCCGGGACCGGGCACAGGTTGAAGGACGATGGA
GGCCAACACTAACGTGGTCATCGGCACCGTCTGCTGCAGCTTTGTCACTTTTCAGCTTCTTTTC
CATTTCATAAGTTGCTGGTTTTCAGCAAGAGTCTCTCTGGGCTATAACAGTCTCAGCACCGAGA
AGAAGATCGAATGGAACTCGAGGGTAGTGTCCACGTGCCACTCTATGCTGGTTGGGATTTTTGG
TTTATACCTCTTCTTCTTCGATGAAGCTACTATAGCTGATCCACTCTGGGGTGATCCATCACTT
GTGAAAATAAATATTTCGACTGCTTCAGGCTACCTCATTTCTGATTTATTGATTATACTTTTTA
ATTGGAAAGTGATCGGAGACAAATTTTTTATAATTCACCATTGCGCAGGACTAATTGCATACTA
CTTTGTATTGAAAATTGGAGTGCTTGCATACATTGCCAATTTCCGCCTGCTTGCTGAGCTTTCC
AGCCCCTTTGTAAACCAGAGATGGTTCTTTGAAGTCCTGAAGTACCCCAAGTTTTCCAAAGTCA
ATGTCATCAATGGAATTCTTATGACCGTGGTCTTTTTCATCGTGCGGATCATCGCGATACCTCC
AATGTACTTCTACGTTTACTCCGTGTACGGAACAGAACCCTACATAAGGCTTGGATCTGTAGTC
CATTTTGTCTGGATCTCTTCTTGTATTGTTTTAGATGTGATGAACATCATGTGGATGATCAAAA
TCACAAAAGGATGCATGAAAGTCATCTCTCTCATCAGACAAGAGAAAGCCAAGGACAGCCTTCA
GAATGGAAAACTCGATTAAAGGCGGCTTCATCAGACAGCTGTGTCCACAGACCATCTTCATTCC
GCTGTCTTGTCTGATAGGACGAGTTCTGTGCCGGCCGCTGTCAGGCAGTGTTGTTACTGTGGCG
CTCTCAGTGTTTTCGTTTCTCCTTTCTTTCCTCTTTAGACAGGAGAAAATGCAATTTAGTTCTC
ATTTCAGGATTTCTTCTTTGCTTCTATATTTTTAGGCATGGATGGAAATCGAAAGGTTTAAATA
AAAGTTGTAAGTAGAGTGGTAAAACTTTTCTGAACTCTCAGTGTACGTGAAGGGTAGAAATGGT
TTGGTGATTTGGTGGCCTCTGTCCACCACCCATTTTGCTGAAGGAATGAGACCGTGTGTGAGCA
GCTGTCCGTTGTGTTCTTTGCTAATGTCAGTGCCTGTGCAAGGCCTCATGTCTAAGTTGCCAAG
ATGCCCAGGCCACCGGAAATGACACAGTGTCATTGGAATATGCAGTCATCTGTTATGATGGAGT
ATTTCTCATGTTGATAATATCCTATTTGAAAATACTTTATGCATTTTAAGATTTCAGATGCTGC
TTTATTTCTGTCTTTAGTGCTTTATCCAATTATATTTTTAAAATGTTATAGTGAGGCAAGGTTT
AAGACCCATCTTGTGGCCCATTTGGTCGAATGTCTTCTGAAAGTGAATACCAGTAGATGACTAC
TACTTGGGCTGATAGGAGGACCCCTAAGAACAGGTCCTGAACACTGCGGCCCTCCCCTCTGGTG
CCTTGTACTTTCTCCAATGAGGATTATATTCTTGCAGAATCTTCCCAACTTCCAAGTCTGACAC
CAGAACATCTGGAACGCTTCTGAAATCAGCCTTGTGTTGTTGCTGAGACTAAAACTGCAGATAA
GGCAGAGTTTGTGCTTTACTCATAGATTTTACTCAGGCTTGCTCAGTTTATCTTTGCTGTTTTT
TTTTTTTTTTTCTTAAAGGGAAGGAAGGAAGGAAGGAAGGAAGGTGACTTAACCCAAGTATTCT
GATTATCAAAACTGTCATTCTATGAGAAAAAAGTAAATGTGTGCGTGCGTGTGTGTGGGGGTGT
TTTTCTTTTTACTTTGATTCTTGTAATCCAAATATAGAATTATAGCTATTATTGCTATTACTTA
GCTATTATTGCCTTTATTTATTTTGTCTTCTGAAGCACTTGACTTTAATGATTGTTCTTAAGAA
ACAGACTTAATCCAATTAGTGGTGAATACTTGAATTTAACTGAACCTAAACCAAAAGATCTAAT
CCATTTAGAGTCTCAGACTGAAGGAGAGCGTTTGACTCTCTCATTATTCATCTTATGACGACGA
AAGGAGACTAGTGGAATGTAATCAAAACATTTAATGTAATGTAGTGTAATTTAATTGTCCAGTA
CAGATAGAGTCTGGCAAGTTCTGGTATGTTTAAAGATGGGAATTGAAATTCCAGTCAATCAAAT
GATAAAAATCAAGTTGATTGTCTTGTGCTTGGTGTGTTTACTTTGAAAGATAAAGTCACATAAA
AGACAGGCCTTTGTCTTCAAAGCAGCTGATGTCGCACTGGTAATGGCTGGCTAAGTTTATTGCT
GTCTCCATCCTAGACTTGCAAGTGTGTATTGGTTGTGTAGGAATGCAAATGAGTTTATCGCTTG
TGGCTCTTTTACAAGAAAATGGGCTTTTTTTTTTTTAAAGAGAGAAGACACTTAAAAAACTATT
TTGGAAATTCACTAAGAAAGGGATAAACCTCGAGGTAAATATTTTTGGCTTTTTGGATATTGCT
ACAATTCTGAACACAGATTTTAAACTTGCCATCAAAATGATGGTAGCATGTAGTTCTGAGTCTT
CATGGAGGCAATGAGTGTTTCCTGCTTAAAAGGTCATATGTATCATTGATCATTGCTGTTATCA
TCGATTGATTATCATTGATCAATAGAACCGGTTAGTCTGTTCAGAATACCAAACATTGAACCAA
GATTTGCCATTGCCTTTGTTAGCAATCCTTATTAGCTGCAGCATCTGGAGTTCCAACTCTCCAC
ATCCTTTATAGAAGGACAAGCATTGGAAATATCCTGCATACTGCCACTGCAGGCAGCGCCCACC
GGGGCTATATCTTGCTGTTCTGTGATCGTATTTATTAAAACAATGACATTTTCATTTATTGAAT
GACAAATTTTTGCTAGATATTTTAGATATAAGTATTTTGGCTACGTGGATTAATTTAAATGAGT
CTATTAGGCATTCTGATATTTAACAAGTCTTAAAATATTTATAGAAAATAAAAGCAAATTGGTA
TAAATTTTTAAGCAACTCTATTTTTCTAGAGAAGATTAGTGACAATCTGAATATGTAGTATTCT
AGAAAACAAACTTTAAAAAAGGAGCAAAAATAAACTGATAACATGCAAGATCGGGGATCCTGCA
TTCGATATTTTATGTGTGAGACTTAAAATTTTTCGAGCTTGGGTTCATAGAATTCGCATTCTGT
GTCTAAAATCACTTGAGGGATTGTTTGCATTTATTTGAAATTCAAAATGGAGTTATGCATGCAT
GCAAAGAAATTAACTCAAAGTACTCTAGTACGTTGGCTTTTTAAAATAGAAGTGGGTTTTTTTC
TGTTTTGTTTCGCTTGTTTTCTGTTATTTCATGGACCCGTCATGTGTTAAGAGGAATAATGGTA
GATTTTACCATCTCTGAGAGTTGCCCTGCTGTACTTTGGATAAACTGGGTCCTTAAGGTTTGGA
AAATTGCCTCTTTACAGGTATTTGGATGGAATTCTATCATAAATTTTAATAATTTGCTTAACAC
AAAGTTTTGTTCAAGTGTTGGATTTTTTTAATTGCTTCCTCTCAGGCCTTGGGCATTTGGAGAC
AAGTTCTTTGTGAGGTTTCAGCTTAACTCCTGGTGGCATTTCTCAGGCACTTGCAAATGCCTTT
GTCACGAATGCACAAAGGGAAAAGTCTCATCCTAACACGTTTCCTTCCTTTCATTTTTAAGAAA
AACCAACATGTCCCACAGGACCCCATTAACATACCTGCGTATGTTTATTCCTGCACTGCTGTTA
GCTCCAATCTGCAAACAAGCGCTTAACGATTGGTTCCTATGCGTTGCCTGGCTTCCAGTGCTTC
CGCCGTCTGTGCGGTGGAAAAGCCCACTCGGTTACGGGCACCGGTAATGTTTCCTGGAAGGTTA
TGCATCTTGCGCTTTGGATTTCATCAAAAGGAAACATTTTACTCGGTTAGAGTAAACATTTTAC
TCGGGCAGAGTGTTTCTCAGCAGGTGTGACCCAGCGCACCAGCGGCAATCTTCCGGTGTGAACA
GTCTGGTGTGAATGCGCGCGCACATTTCCCAGCCCTACCCGCAGCTGGCTCACCGTAAAGCTAC
TGAAAGCTAACTCTGGTGCAAAACTCGGATGATGTGTGCGGAAATGAGCAAATCCCACAGGGCC
CGGAGTGGGGGGGAGACAGCAAGACTGGTTTTCCTTCCAGAGATGTTAGCTCTTCCTCTATTGG
TGGTTTCCTGGCTGAGCTCTCCGGCTCGCTCATCTCCAATGCCCCGCAGACCTCAGCATCCCCT
TTCCATATGCCAGGGCCTCCCCATGTCTCCTCCTGAGACACCCCACTCATCTGGATGCTTCTCA
GTCTCTTGTGGCGGGTTTCAGAGTTTACAAACAGGTTTCCTCATGGACACAAGCATTGTAGGAG
GTGTAAATAAAGATCTGACAAACCACACTTTATTAAGAGGCGACAGGAAGCCAGTCAGCGTATA
ATAATACCTGTTTACAACATGAAACAAAGGCGATTATGGTTTTATTAAGAAACATCTGTAAGCT
CTTTCTTAAACTGGTTTAGCAATAAGAGTTTTATAAAGTGTTTCAGCTGGGGATTTATTGTAGG
TGTGTTTAATTATATAAATGTTCTTTATAGACCCCATGGCAGTACTGAGGTTGCAAAACAGAGC
TGTTCTGATGAAGGTAAGGTCTGGCATTGTTATAGAGTTTTCTTCAACATAAAAGACTTCTGTG
GTACTGTTTATTTAAGACTTCCCAGCTAATGAGTTATTTAGTGTTTTCTCGAGTACAACACCCA
GGGACTTGAACCCTGGTACCTTTGTGATCCGAACTTCAACTCCCACCTACTGGATAGTGTGTCA
CACTTTGTTTTTTTATTGCAGTAGACAGCCTCGAAAGACGGGTTTGTTTGCATGGAAAGCATTC
ACATGTATCCATTCTGAACAGCAGTCTTGATATTTATTAGGTCCTACACATAAGACCAAACCCA
GTTAAAACCGTTTCTGAATCTCAGTTTATTTGCTCCATACCTCTCGCTGGAAATTTCAGTTTTT
TTCTTTGCATTTTTATGTAATTCTGCCATTGGTGTGTGTTAGAATCATTTGCTCCTTTTTTGGT
TAATGGAACCTTAAAAATATGGCTGTAAATAAAAATGTGCCCTGTAGTTTTGTTTGTTGCCTGA
ATAGTTTCTGCGGATTGTGTCTGCTTTTTCCTTAAGGAATTTTTTGTGTAGATTATACTCTTAC
AAGTAGGATAAATTATGAAGTTTTTGAGTTGTTTGGGTTTGTAATAACATTTCAACGTAGATCT
TATTTGCCGACGCTACTTTCGAACCGCAGGACATGCACTCGCTATAGTGATATGTACGTTTTTT
TCTGATGCTATAATATATGATATTGTCAAGATATGCTTAATAATTTCCATAAGACTGAGTTTTA
TTTACAAAACATAAGACCAGATAATTTGTAAACCAGTGTTACTAAGATGTATCAGTAATTAAAA
TACAACCTAGGAGCTTTGGTTTGGTGTCTGGTTGTGCTTTGTTTGAAGGGATAGAAAGTGTCTT
TTCGGTACTTTCATTAAACTTTTGAAATGTTTGTATACTTCGTGTGTGAGCCATTTTGAAGTTT
ATGCAAGTTCTAAGCAATAACCTGCATGTTCTACCTGGACAGCACCCTTCGTCAGTCTCCTTCA
GTATTCAGAGTGACACAAATGACTATTGTGTAACTCCCCTCTCCCAGTGGACACCTTGGGAGTC
TCCCTGTTAAAACACTACTGTAATGTGGTGCAAAACTTTGTATTTTGTGAAAGAAAAATAAAGC
CACACTTATTTAGTGCAAA

hide sequence

RefSeq Acc Id:

XM_006233254 ⟹ XP_006233316

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	224,768,034 - 224,824,511 (-)	NCBI
Rnor_5.0	2	242,810,863 - 242,886,041 (-)	NCBI

Sequence:

show sequence

AAACCCATCAGTTGCCCTTTCATCCCCTTCTCGATAAAGCAAACCATGCCGATCTTTTGCATAG
CGTCTGGGCATATAAAGCAGAATTCACCATTGGAAAAGGGTTTTGGTTACGTGGCGAGCCGGGA
CGCTGACCGCCGCGGGGGCGGACTCACATACTTCTCCCCACTCGTGAGGTTGAAGGACGATGGA
GGCCAACACTAACGTGGTCATCGGCACCGTCTGCTGCAGCTTTGTCACTTTTCAGCTTCTTTTC
CATTTCATAAGTTGCTGGTTTTCAGCAAGAGTCTCTCTGGGCTATAACAGTCTCAGCACCGAGA
AGAAGATCGAATGGAACTCGAGGGTAGTGTCCACGTGCCACTCTATGCTGGTTGGGATTTTTGG
TTTATACCTCTTCTTCTTCGATGAAGCTACTATAGCTGATCCACTCTGGGGTGATCCATCACTT
GTGAAAATAAATATTTCGACTGCTTCAGGCTACCTCATTTCTGATTTATTGATTATACTTTTTA
ATTGGAAAGTGATCGGAGACAAATTTTTTATAATTCACCATTGCGCAGGACTAATTGCATACTA
CTTTGTATTGAAAATTGGAGTGCTTGCATACATTGCCAATTTCCGCCTGCTTGCTGAGCTTTCC
AGCCCCTTTGTAAACCAGAGATGGTTCTTTGAAGTCCTGAAGTACCCCAAGTTTTCCAAAGTCA
ATGTCATCAATGGAATTCTTATGACCGTGGTCTTTTTCATCGTGCGGATCATCGCGATACCTCC
AATGTACTTCTACGTTTACTCCGTGTACGGAACAGAACCCTACATAAGGCTTGGATCTGTAGTC
CATTTTGTCTGGATCTCTTCTTGTATTGTTTTAGATGTGATGAACATCATGTGGATGATCAAAA
TCACAAAAGGATGCATGAAAGTCATCTCTCTCATCAGACAAGAGAAAGCCAAGGACAGCCTTCA
GAATGGAAAACTCGATTAAAGGCGGCTTCATCAGACAGCTGTGTCCACAGACCATCTTCATTCC
GCTGTCTTGTCTGATAGGACGAGTTCTGTGCCGGCCGCTGTCAGGCAGTGTTGTTACTGTGGCG
CTCTCAGTGTTTTCGTTTCTCCTTTCTTTCCTCTTTAGACAGGAGAAAATGCAATTTAGTTCTC
ATTTCAGGATTTCTTCTTTGCTTCTATATTTTTAGGCATGGATGGAAATCGAAAGGTTTAAATA
AAAGTTGTAAGTAGAGTGGTAAAACTTTTCTGAACTCTCAGTGTACGTGAAGGGTAGAAATGGT
TTGGTGATTTGGTGGCCTCTGTCCACCACCCATTTTGCTGAAGGAATGAGACCGTGTGTGAGCA
GCTGTCCGTTGTGTTCTTTGCTAATGTCAGTGCCTGTGCAAGGCCTCATGTCTAAGTTGCCAAG
ATGCCCAGGCCACCGGAAATGACACAGTGTCATTGGAATATGCAGTCATCTGTTATGATGGAGT
ATTTCTCATGTTGATAATATCCTATTTGAAAATACTTTATGCATTTTAAGATTTCAGATGCTGC
TTTATTTCTGTCTTTAGTGCTTTATCCAATTATATTTTTAAAATGTTATAGTGAGGCAAGGTTT
AAGACCCATCTTGTGGCCCATTTGGTCGAATGTCTTCTGAAAGTGAATACCAGTAGATGACTAC
TACTTGGGCTGATAGGAGGACCCCTAAGAACAGGTCCTGAACACTGCGGCCCTCCCCTCTGGTG
CCTTGTACTTTCTCCAATGAGGATTATATTCTTGCAGAATCTTCCCAACTTCCAAGTCTGACAC
CAGAACATCTGGAACGCTTCTGAAATCAGCCTTGTGTTGTTGCTGAGACTAAAACTGCAGATAA
GGCAGAGTTTGTGCTTTACTCATAGATTTTACTCAGGCTTGCTCAGTTTATCTTTGCTGTTTTT
TTTTTTTTTTTCTTAAAGGGAAGGAAGGAAGGAAGGAAGGAAGGTGACTTAACCCAAGTATTCT
GATTATCAAAACTGTCATTCTATGAGAAAAAAGTAAATGTGTGCGTGCGTGTGTGTGGGGGTGT
TTTTCTTTTTACTTTGATTCTTGTAATCCAAATATAGAATTATAGCTATTATTGCTATTACTTA
GCTATTATTGCCTTTATTTATTTTGTCTTCTGAAGCACTTGACTTTAATGATTGTTCTTAAGAA
ACAGACTTAATCCAATTAGTGGTGAATACTTGAATTTAACTGAACCTAAACCAAAAGATCTAAT
CCATTTAGAGTCTCAGACTGAAGGAGAGCGTTTGACTCTCTCATTATTCATCTTATGACGACGA
AAGGAGACTAGTGGAATGTAATCAAAACATTTAATGTAATGTAGTGTAATTTAATTGTCCAGTA
CAGATAGAGTCTGGCAAGTTCTGGTATGTTTAAAGATGGGAATTGAAATTCCAGTCAATCAAAT
GATAAAAATCAAGTTGATTGTCTTGTGCTTGGTGTGTTTACTTTGAAAGATAAAGTCACATAAA
AGACAGGCCTTTGTCTTCAAAGCAGCTGATGTCGCACTGGTAATGGCTGGCTAAGTTTATTGCT
GTCTCCATCCTAGACTTGCAAGTGTGTATTGGTTGTGTAGGAATGCAAATGAGTTTATCGCTTG
TGGCTCTTTTACAAGAAAATGGGCTTTTTTTTTTTTAAAGAGAGAAGACACTTAAAAAACTATT
TTGGAAATTCACTAAGAAAGGGATAAACCTCGAGGTAAATATTTTTGGCTTTTTGGATATTGCT
ACAATTCTGAACACAGATTTTAAACTTGCCATCAAAATGATGGTAGCATGTAGTTCTGAGTCTT
CATGGAGGCAATGAGTGTTTCCTGCTTAAAAGGTCATATGTATCATTGATCATTGCTGTTATCA
TCGATTGATTATCATTGATCAATAGAACCGGTTAGTCTGTTCAGAATACCAAACATTGAACCAA
GATTTGCCATTGCCTTTGTTAGCAATCCTTATTAGCTGCAGCATCTGGAGTTCCAACTCTCCAC
ATCCTTTATAGAAGGACAAGCATTGGAAATATCCTGCATACTGCCACTGCAGGCAGCGCCCACC
GGGGCTATATCTTGCTGTTCTGTGATCGTATTTATTAAAACAATGACATTTTCATTTATTGAAT
GACAAATTTTTGCTAGATATTTTAGATATAAGTATTTTGGCTACGTGGATTAATTTAAATGAGT
CTATTAGGCATTCTGATATTTAACAAGTCTTAAAATATTTATAGAAAATAAAAGCAAATTGGTA
TAAATTTTTAAGCAACTCTATTTTTCTAGAGAAGATTAGTGACAATCTGAATATGTAGTATTCT
AGAAAACAAACTTTAAAAAAGGAGCAAAAATAAACTGATAACATGCAAGATCGGGGATCCTGCA
TTCGATATTTTATGTGTGAGACTTAAAATTTTTCGAGCTTGGGTTCATAGAATTCGCATTCTGT
GTCTAAAATCACTTGAGGGATTGTTTGCATTTATTTGAAATTCAAAATGGAGTTATGCATGCAT
GCAAAGAAATTAACTCAAAGTACTCTAGTACGTTGGCTTTTTAAAATAGAAGTGGGTTTTTTTC
TGTTTTGTTTCGCTTGTTTTCTGTTATTTCATGGACCCGTCATGTGTTAAGAGGAATAATGGTA
GATTTTACCATCTCTGAGAGTTGCCCTGCTGTACTTTGGATAAACTGGGTCCTTAAGGTTTGGA
AAATTGCCTCTTTACAGGTATTTGGATGGAATTCTATCATAAATTTTAATAATTTGCTTAACAC
AAAGTTTTGTTCAAGTGTTGGATTTTTTTAATTGCTTCCTCTCAGGCCTTGGGCATTTGGAGAC
AAGTTCTTTGTGAGGTTTCAGCTTAACTCCTGGTGGCATTTCTCAGGCACTTGCAAATGCCTTT
GTCACGAATGCACAAAGGGAAAAGTCTCATCCTAACACGTTTCCTTCCTTTCATTTTTAAGAAA
AACCAACATGTCCCACAGGACCCCATTAACATACCTGCGTATGTTTATTCCTGCACTGCTGTTA
GCTCCAATCTGCAAACAAGCGCTTAACGATTGGTTCCTATGCGTTGCCTGGCTTCCAGTGCTTC
CGCCGTCTGTGCGGTGGAAAAGCCCACTCGGTTACGGGCACCGGTAATGTTTCCTGGAAGGTTA
TGCATCTTGCGCTTTGGATTTCATCAAAAGGAAACATTTTACTCGGTTAGAGTAAACATTTTAC
TCGGGCAGAGTGTTTCTCAGCAGGTGTGACCCAGCGCACCAGCGGCAATCTTCCGGTGTGAACA
GTCTGGTGTGAATGCGCGCGCACATTTCCCAGCCCTACCCGCAGCTGGCTCACCGTAAAGCTAC
TGAAAGCTAACTCTGGTGCAAAACTCGGATGATGTGTGCGGAAATGAGCAAATCCCACAGGGCC
CGGAGTGGGGGGGAGACAGCAAGACTGGTTTTCCTTCCAGAGATGTTAGCTCTTCCTCTATTGG
TGGTTTCCTGGCTGAGCTCTCCGGCTCGCTCATCTCCAATGCCCCGCAGACCTCAGCATCCCCT
TTCCATATGCCAGGGCCTCCCCATGTCTCCTCCTGAGACACCCCACTCATCTGGATGCTTCTCA
GTCTCTTGTGGCGGGTTTCAGAGTTTACAAACAGGTTTCCTCATGGACACAAGCATTGTAGGAG
GTGTAAATAAAGATCTGACAAACCACACTTTATTAAGAGGCGACAGGAAGCCAGTCAGCGTATA
ATAATACCTGTTTACAACATGAAACAAAGGCGATTATGGTTTTATTAAGAAACATCTGTAAGCT
CTTTCTTAAACTGGTTTAGCAATAAGAGTTTTATAAAGTGTTTCAGCTGGGGATTTATTGTAGG
TGTGTTTAATTATATAAATGTTCTTTATAGACCCCATGGCAGTACTGAGGTTGCAAAACAGAGC
TGTTCTGATGAAGGTAAGGTCTGGCATTGTTATAGAGTTTTCTTCAACATAAAAGACTTCTGTG
GTACTGTTTATTTAAGACTTCCCAGCTAATGAGTTATTTAGTGTTTTCTCGAGTACAACACCCA
GGGACTTGAACCCTGGTACCTTTGTGATCCGAACTTCAACTCCCACCTACTGGATAGTGTGTCA
CACTTTGTTTTTTTATTGCAGTAGACAGCCTCGAAAGACGGGTTTGTTTGCATGGAAAGCATTC
ACATGTATCCATTCTGAACAGCAGTCTTGATATTTATTAGGTCCTACACATAAGACCAAACCCA
GTTAAAACCGTTTCTGAATCTCAGTTTATTTGCTCCATACCTCTCGCTGGAAATTTCAGTTTTT
TTCTTTGCATTTTTATGTAATTCTGCCATTGGTGTGTGTTAGAATCATTTGCTCCTTTTTTGGT
TAATGGAACCTTAAAAATATGGCTGTAAATAAAAATGTGCCCTGTAGTTTTGTTTGTTGCCTGA
ATAGTTTCTGCGGATTGTGTCTGCTTTTTCCTTAAGGAATTTTTTGTGTAGATTATACTCTTAC
AAGTAGGATAAATTATGAAGTTTTTGAGTTGTTTGGGTTTGTAATAACATTTCAACGTAGATCT
TATTTGCCGACGCTACTTTCGAACCGCAGGACATGCACTCGCTATAGTGATATGTACGTTTTTT
TCTGATGCTATAATATATGATATTGTCAAGATATGCTTAATAATTTCCATAAGACTGAGTTTTA
TTTACAAAACATAAGACCAGATAATTTGTAAACCAGTGTTACTAAGATGTATCAGTAATTAAAA
TACAACCTAGGAGCTTTGGTTTGGTGTCTGGTTGTGCTTTGTTTGAAGGGATAGAAAGTGTCTT
TTCGGTACTTTCATTAAACTTTTGAAATGTTTGTATACTTCGTGTGTGAGCCATTTTGAAGTTT
ATGCAAGTTCTAAGCAATAACCTGCATGTTCTACCTGGACAGCACCCTTCGTCAGTCTCCTTCA
GTATTCAGAGTGACACAAATGACTATTGTGTAACTCCCCTCTCCCAGTGGACACCTTGGGAGTC
TCCCTGTTAAAACACTACTGTAATGTGGTGCAAAACTTTGTATTTTGTGAAAGAAAAATAAAGC
CACACTTATTTAGTGCAAA

hide sequence

RefSeq Acc Id:

XM_039102801 ⟹ XP_038958729

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,360,155 (-)	NCBI

RefSeq Acc Id:

XM_039102803 ⟹ XP_038958731

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	209,284,873 - 209,360,155 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129351	(Get FASTA)	NCBI Sequence Viewer
	XP_006233306	(Get FASTA)	NCBI Sequence Viewer
	XP_006233308	(Get FASTA)	NCBI Sequence Viewer
	XP_006233313	(Get FASTA)	NCBI Sequence Viewer
	XP_006233314	(Get FASTA)	NCBI Sequence Viewer
	XP_006233315	(Get FASTA)	NCBI Sequence Viewer
	XP_038958729	(Get FASTA)	NCBI Sequence Viewer
	XP_038958731	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82071	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001129351 ⟸ NM_001135879

- UniProtKB:

D4AAE5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI
FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA
YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI
PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS
LQNGKLD

hide sequence

RefSeq Acc Id:	XP_006233314 ⟸ XM_006233252
- Peptide Label:	isoform X1
- UniProtKB:	D4AAE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS LQNGKLD hide sequence

RefSeq Acc Id:	XP_006233313 ⟸ XM_006233251
- Peptide Label:	isoform X1
- UniProtKB:	D4AAE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS LQNGKLD hide sequence

RefSeq Acc Id:

XP_006233316 ⟸ XM_006233254

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI
FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA
YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI
PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS
LQNGKLD

hide sequence

RefSeq Acc Id:	XP_006233308 ⟸ XM_006233246
- Peptide Label:	isoform X1
- UniProtKB:	D4AAE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS LQNGKLD hide sequence

RefSeq Acc Id:	XP_006233315 ⟸ XM_006233253
- Peptide Label:	isoform X1
- UniProtKB:	D4AAE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS LQNGKLD hide sequence

RefSeq Acc Id:	XP_006233306 ⟸ XM_006233244
- Peptide Label:	isoform X1
- UniProtKB:	D4AAE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI FGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIA YYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIVRIIAI PPMYFYVYSVYGTEPYIRLGSVVHFVWISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDS LQNGKLD hide sequence

RefSeq Acc Id:

ENSRNOP00000033667 ⟸ ENSRNOT00000032324

RefSeq Acc Id:	XP_038958731 ⟸ XM_039102803
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038958729 ⟸ XM_039102801
- Peptide Label:	isoform X1

Protein Domains

TLC

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563041	AgrOrtholog
Ensembl Genes	ENSRNOG00000025160	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000033667	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000032324	ENTREZGENE, UniProtKB/TrEMBL
InterPro	TLC-dom	UniProtKB/TrEMBL
KEGG Report	rno:365924	UniProtKB/TrEMBL
NCBI Gene	365924	ENTREZGENE
Pfam	TRAM_LAG1_CLN8	UniProtKB/TrEMBL
PhenoGen	Tlcd4	PhenoGen
PROSITE	TLC	UniProtKB/TrEMBL
SMART	TLC	UniProtKB/TrEMBL
UniProt	D4AAE5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-05	Tlcd4	TLC domain containing 4	Tmem56	transmembrane protein 56	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Tmem56	transmembrane protein 56	Tmem56_predicted	transmembrane protein 56 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tmem56_predicted	transmembrane protein 56 (predicted)	RGD1563041_predicted	similar to RIKEN cDNA 4930577M16 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1563041_predicted	similar to RIKEN cDNA 4930577M16 (predicted)	LOC365924	similar to RIKEN cDNA 4930577M16	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC365924	similar to RIKEN cDNA 4930577M16			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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