Ssbp2 (single-stranded DNA binding protein 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ssbp2 (single-stranded DNA binding protein 2) Rattus norvegicus
Analyze
Symbol: Ssbp2
Name: single-stranded DNA binding protein 2
RGD ID: 1562968
Description: Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2); INTERACTS WITH 17beta-estradiol; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361877; RGD1562968; similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2); single-stranded DNA-binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8224,385,494 - 24,673,768 (+)NCBIGRCr8
mRatBN7.2222,650,488 - 22,938,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,651,258 - 22,933,696 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx229,695,853 - 29,977,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,796,201 - 28,077,896 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0222,615,079 - 22,897,179 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0220,416,795 - 20,707,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl220,431,243 - 20,702,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0220,291,256 - 20,579,015 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4221,651,784 - 21,926,781 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera218,764,608 - 19,037,384 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium atom  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clomiphene  (ISO)
copper(II) chloride  (ISO)
coumestrol  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
hexestrol  (ISO)
indometacin  (ISO)
mestranol  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
panobinostat  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ssbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8224,385,494 - 24,673,768 (+)NCBIGRCr8
mRatBN7.2222,650,488 - 22,938,669 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,651,258 - 22,933,696 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx229,695,853 - 29,977,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,796,201 - 28,077,896 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0222,615,079 - 22,897,179 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0220,416,795 - 20,707,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl220,431,243 - 20,702,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0220,291,256 - 20,579,015 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4221,651,784 - 21,926,781 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera218,764,608 - 19,037,384 (+)NCBICelera
Cytogenetic Map2q12NCBI
SSBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38581,412,804 - 81,751,807 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl581,412,804 - 81,751,797 (-)EnsemblGRCh38hg38GRCh38
GRCh37580,708,623 - 81,047,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36580,751,428 - 81,082,828 (-)NCBINCBI36Build 36hg18NCBI36
Build 34580,751,427 - 81,082,828NCBI
Celera576,620,182 - 76,950,770 (-)NCBICelera
Cytogenetic Map5q14.1NCBI
HuRef575,922,003 - 76,254,803 (-)NCBIHuRef
CHM1_1580,145,979 - 80,479,762 (-)NCBICHM1_1
T2T-CHM13v2.0581,897,401 - 82,236,409 (-)NCBIT2T-CHM13v2.0
Ssbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391391,608,449 - 91,854,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1391,608,402 - 91,851,548 (+)EnsemblGRCm39 Ensembl
GRCm381391,460,305 - 91,706,175 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1391,460,283 - 91,703,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv371391,600,702 - 91,845,780 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361391,919,313 - 92,177,668 (+)NCBIMGSCv36mm8
Celera1395,159,367 - 95,343,577 (+)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1347.43NCBI
Ssbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541828,633,753 - 28,808,117 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541828,562,735 - 28,813,541 (+)NCBIChiLan1.0ChiLan1.0
SSBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2433,557,778 - 33,882,257 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1531,711,424 - 32,043,031 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0533,535,213 - 33,859,595 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1533,852,056 - 34,173,716 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl533,852,266 - 34,170,615 (+)Ensemblpanpan1.1panPan2
SSBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1325,616,750 - 25,900,991 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl325,616,824 - 25,900,501 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha326,852,975 - 27,137,039 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0325,530,643 - 25,815,107 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl325,530,545 - 25,815,874 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1325,482,996 - 25,767,311 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0325,452,383 - 25,736,561 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0325,731,849 - 26,016,123 (+)NCBIUU_Cfam_GSD_1.0
Ssbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213181,579,565 - 181,912,788 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936469713,649 - 1,046,329 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936469713,077 - 1,046,187 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl289,948,773 - 90,263,158 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1289,960,133 - 90,263,290 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2291,860,545 - 91,958,972 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SSBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1475,561,872 - 75,882,924 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl475,562,625 - 75,882,845 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604924,433,125 - 24,759,200 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247431,909,980 - 2,186,132 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247431,911,567 - 2,186,107 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ssbp2
1299 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:228
Count of miRNA genes:139
Interacting mature miRNAs:151
Transcripts:ENSRNOT00000021857, ENSRNOT00000071139
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat

Markers in Region
AW558684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2222,933,317 - 22,933,401 (+)MAPPERmRatBN7.2
Rnor_6.0220,702,489 - 20,702,572NCBIRnor6.0
Rnor_5.0220,573,666 - 20,573,749UniSTSRnor5.0
RGSC_v3.4221,926,527 - 21,926,610UniSTSRGSC3.4
Celera219,037,006 - 19,037,089UniSTS
Cytogenetic Map2q12UniSTS
RH143489  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2222,654,413 - 22,654,575 (+)MAPPERmRatBN7.2
Rnor_6.0220,420,746 - 20,420,907NCBIRnor6.0
Rnor_5.0220,294,458 - 20,294,619UniSTSRnor5.0
RGSC_v3.4221,641,163 - 21,641,324UniSTSRGSC3.4
Celera218,768,382 - 18,768,544UniSTS
Cytogenetic Map2q12UniSTS
RH131739  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2222,933,361 - 22,933,566 (+)MAPPERmRatBN7.2
Rnor_6.0220,702,533 - 20,702,737NCBIRnor6.0
Rnor_5.0220,573,710 - 20,573,914UniSTSRnor5.0
RGSC_v3.4221,926,571 - 21,926,775UniSTSRGSC3.4
Celera219,037,050 - 19,037,254UniSTS
Cytogenetic Map2q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 43 34 18 19 18 8 11 74 35 41 11 8
Low 1 23 23 23
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000021857   ⟹   ENSRNOP00000021857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,665,112 - 22,933,696 (+)Ensembl
Rnor_6.0 Ensembl220,431,243 - 20,702,515 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095831   ⟹   ENSRNOP00000090009
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,651,277 - 22,933,694 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096196   ⟹   ENSRNOP00000094192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,651,350 - 22,933,677 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109181   ⟹   ENSRNOP00000094798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,651,258 - 22,933,696 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113453   ⟹   ENSRNOP00000084174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,651,342 - 22,933,572 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117233   ⟹   ENSRNOP00000089419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl222,651,258 - 22,933,696 (+)Ensembl
RefSeq Acc Id: NM_001399027   ⟹   NP_001385956
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399028   ⟹   NP_001385957
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399029   ⟹   NP_001385958
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399030   ⟹   NP_001385959
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399031   ⟹   NP_001385960
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399032   ⟹   NP_001385961
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399033   ⟹   NP_001385962
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399034   ⟹   NP_001385963
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: NM_001399035   ⟹   NP_001385964
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,424 - 24,673,768 (+)NCBI
mRatBN7.2222,651,302 - 22,938,669 (+)NCBI
RefSeq Acc Id: XM_008760646   ⟹   XP_008758868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,568 (+)NCBI
Rnor_6.0220,416,795 - 20,707,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760648   ⟹   XP_008758870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,568 (+)NCBI
Rnor_6.0220,416,795 - 20,707,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760649   ⟹   XP_008758871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,572 (+)NCBI
Rnor_6.0220,416,795 - 20,702,867 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760653   ⟹   XP_008758875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,572 (+)NCBI
Rnor_6.0220,416,795 - 20,707,838 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103427   ⟹   XP_038959355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,570 (+)NCBI
RefSeq Acc Id: XM_039103428   ⟹   XP_038959356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103429   ⟹   XP_038959357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,572 (+)NCBI
RefSeq Acc Id: XM_039103430   ⟹   XP_038959358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
mRatBN7.2222,650,513 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103432   ⟹   XP_038959360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,300 - 24,668,795 (+)NCBI
mRatBN7.2222,651,180 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103433   ⟹   XP_038959361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,302 - 24,668,795 (+)NCBI
mRatBN7.2222,651,182 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103434   ⟹   XP_038959362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,311 - 24,668,795 (+)NCBI
mRatBN7.2222,651,193 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103436   ⟹   XP_038959364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,326 - 24,668,795 (+)NCBI
mRatBN7.2222,651,212 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103440   ⟹   XP_038959368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,475,788 - 24,668,795 (+)NCBI
mRatBN7.2222,750,808 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103442   ⟹   XP_038959370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,327 - 24,668,795 (+)NCBI
mRatBN7.2222,651,213 - 22,933,570 (+)NCBI
RefSeq Acc Id: XM_039103445   ⟹   XP_038959373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,475,788 - 24,668,795 (+)NCBI
mRatBN7.2222,750,814 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103447   ⟹   XP_038959375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,314 - 24,668,795 (+)NCBI
mRatBN7.2222,651,198 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103448   ⟹   XP_038959376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,604 - 24,668,795 (+)NCBI
mRatBN7.2222,650,488 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_039103449   ⟹   XP_038959377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,475,788 - 24,668,795 (+)NCBI
mRatBN7.2222,750,810 - 22,933,568 (+)NCBI
RefSeq Acc Id: XM_063282002   ⟹   XP_063138072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,400,205 - 24,456,226 (+)NCBI
RefSeq Acc Id: XM_063282003   ⟹   XP_063138073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282004   ⟹   XP_063138074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282006   ⟹   XP_063138076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282007   ⟹   XP_063138077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282008   ⟹   XP_063138078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282009   ⟹   XP_063138079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282010   ⟹   XP_063138080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282011   ⟹   XP_063138081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,635 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282012   ⟹   XP_063138082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,387 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282013   ⟹   XP_063138083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,392 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282014   ⟹   XP_063138084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,390 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282015   ⟹   XP_063138085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,319 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282016   ⟹   XP_063138086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,323 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282017   ⟹   XP_063138087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,388 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282018   ⟹   XP_063138088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,400,286 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282019   ⟹   XP_063138089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,405 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282020   ⟹   XP_063138090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,494 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282021   ⟹   XP_063138091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,418 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282022   ⟹   XP_063138092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,385,494 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282023   ⟹   XP_063138093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,525,247 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282024   ⟹   XP_063138094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,386,523 - 24,668,795 (+)NCBI
RefSeq Acc Id: XM_063282025   ⟹   XP_063138095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8224,602,201 - 24,668,795 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001385956 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385957 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385958 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385959 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385960 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385961 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385962 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385963 (Get FASTA)   NCBI Sequence Viewer  
  NP_001385964 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758868 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758870 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758871 (Get FASTA)   NCBI Sequence Viewer  
  XP_008758875 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959355 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959356 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959357 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959358 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959360 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959361 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959362 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959364 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959375 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038959377 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138072 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138073 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138074 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138076 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138077 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138078 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138079 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138080 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138081 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138082 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138083 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138084 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138085 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138086 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138087 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138088 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138089 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138090 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138091 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138092 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138093 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138094 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138095 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10004 (Get FASTA)   NCBI Sequence Viewer  
  EDM10005 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021857
  ENSRNOP00000021857.7
  ENSRNOP00000084174
  ENSRNOP00000084174.1
  ENSRNOP00000089419
  ENSRNOP00000089419.1
  ENSRNOP00000090009
  ENSRNOP00000090009.1
  ENSRNOP00000094192
  ENSRNOP00000094192.1
  ENSRNOP00000094798
  ENSRNOP00000094798.1
RefSeq Acc Id: XP_008758868   ⟸   XM_008760646
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008758870   ⟸   XM_008760648
- Peptide Label: isoform X8
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758871   ⟸   XM_008760649
- Peptide Label: isoform X9
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758875   ⟸   XM_008760653
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: ENSRNOP00000021857   ⟸   ENSRNOT00000021857
RefSeq Acc Id: XP_038959376   ⟸   XM_039103448
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038959357   ⟸   XM_039103429
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959355   ⟸   XM_039103427
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959356   ⟸   XM_039103428
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959358   ⟸   XM_039103430
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038959360   ⟸   XM_039103432
- Peptide Label: isoform X15
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959361   ⟸   XM_039103433
- Peptide Label: isoform X19
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959362   ⟸   XM_039103434
- Peptide Label: isoform X21
- UniProtKB: A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959375   ⟸   XM_039103447
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038959364   ⟸   XM_039103436
- Peptide Label: isoform X22
- UniProtKB: A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959370   ⟸   XM_039103442
- Peptide Label: isoform X28
- UniProtKB: A0A8I6AH80 (UniProtKB/TrEMBL),   A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959368   ⟸   XM_039103440
- Peptide Label: isoform X26
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959377   ⟸   XM_039103449
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038959373   ⟸   XM_039103445
- Peptide Label: isoform X30
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094192   ⟸   ENSRNOT00000096196
RefSeq Acc Id: ENSRNOP00000089419   ⟸   ENSRNOT00000117233
RefSeq Acc Id: ENSRNOP00000084174   ⟸   ENSRNOT00000113453
RefSeq Acc Id: ENSRNOP00000090009   ⟸   ENSRNOT00000095831
RefSeq Acc Id: ENSRNOP00000094798   ⟸   ENSRNOT00000109181
RefSeq Acc Id: NP_001385956   ⟸   NM_001399027
- Peptide Label: isoform 1
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385957   ⟸   NM_001399028
- Peptide Label: isoform 2
- UniProtKB: A0A8I6ALH6 (UniProtKB/TrEMBL),   A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385958   ⟸   NM_001399029
- Peptide Label: isoform 3
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385959   ⟸   NM_001399030
- Peptide Label: isoform 4
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385963   ⟸   NM_001399034
- Peptide Label: isoform 8
- UniProtKB: A0A8I6GBJ4 (UniProtKB/TrEMBL),   A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385961   ⟸   NM_001399032
- Peptide Label: isoform 6
- UniProtKB: A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385962   ⟸   NM_001399033
- Peptide Label: isoform 7
- UniProtKB: A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385964   ⟸   NM_001399035
- Peptide Label: isoform 9
- UniProtKB: A0A8I6ACS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001385960   ⟸   NM_001399031
- Peptide Label: isoform 5
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138090   ⟸   XM_063282020
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063138092   ⟸   XM_063282022
- Peptide Label: isoform X34
- UniProtKB: A6I4P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138073   ⟸   XM_063282003
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063138076   ⟸   XM_063282006
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138077   ⟸   XM_063282007
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063138078   ⟸   XM_063282008
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063138074   ⟸   XM_063282004
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138079   ⟸   XM_063282009
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063138080   ⟸   XM_063282010
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063138081   ⟸   XM_063282011
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063138085   ⟸   XM_063282015
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063138086   ⟸   XM_063282016
- Peptide Label: isoform X27
- UniProtKB: A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138082   ⟸   XM_063282012
- Peptide Label: isoform X20
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138087   ⟸   XM_063282017
- Peptide Label: isoform X29
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138084   ⟸   XM_063282014
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AA81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138083   ⟸   XM_063282013
- Peptide Label: isoform X23
- UniProtKB: F1M3J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138089   ⟸   XM_063282019
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063138091   ⟸   XM_063282021
- Peptide Label: isoform X34
- UniProtKB: A6I4P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138094   ⟸   XM_063282024
- Peptide Label: isoform X35
- UniProtKB: A6I4P7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138072   ⟸   XM_063282002
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138088   ⟸   XM_063282018
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063138093   ⟸   XM_063282023
- Peptide Label: isoform X34
- UniProtKB: A6I4P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138095   ⟸   XM_063282025
- Peptide Label: isoform X35
- UniProtKB: A6I4P7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M3J3-F1-model_v2 AlphaFold F1M3J3 1-367 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562968 AgrOrtholog
BioCyc Gene G2FUF-54884 BioCyc
Ensembl Genes ENSRNOG00000016213 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021857.9 UniProtKB/TrEMBL
  ENSRNOT00000095831 ENTREZGENE
  ENSRNOT00000095831.1 UniProtKB/TrEMBL
  ENSRNOT00000096196.1 UniProtKB/TrEMBL
  ENSRNOT00000109181 ENTREZGENE
  ENSRNOT00000109181.1 UniProtKB/TrEMBL
  ENSRNOT00000113453 ENTREZGENE
  ENSRNOT00000113453.1 UniProtKB/TrEMBL
  ENSRNOT00000117233.1 UniProtKB/TrEMBL
InterPro LisH_dimerisation UniProtKB/TrEMBL
  SSDP_DNA-bd UniProtKB/TrEMBL
NCBI Gene 361877 ENTREZGENE
PANTHER SINGLE STRANDED DNA BINDING PROTEIN UniProtKB/TrEMBL
  SINGLE-STRANDED DNA-BINDING PROTEIN 2 UniProtKB/TrEMBL
Pfam SSDP UniProtKB/TrEMBL
PhenoGen Ssbp2 PhenoGen
PRINTS SSDNABINDING UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016213 RatGTEx
SMART LisH UniProtKB/TrEMBL
UniProt A0A8I6AA81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AH80 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GBJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6I4P6 ENTREZGENE, UniProtKB/TrEMBL
  A6I4P7 ENTREZGENE, UniProtKB/TrEMBL
  F1M3J3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Ssbp2  single-stranded DNA binding protein 2  RGD1562968_predicted  similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-10 RGD1562968_predicted  similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2) (predicted)      Name updated 1299863 APPROVED
2006-03-07 RGD1562968_predicted  similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2) (predicted)  LOC361877  similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361877  similar to Single-stranded DNA-binding protein 2 (Sequence-specific single-stranded-DNA-binding protein 2)      Symbol and Name status set to provisional 70820 PROVISIONAL