Aig1 (androgen-induced 1) - Rat Genome Database

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Gene: Aig1 (androgen-induced 1) Rattus norvegicus
Analyze
Symbol: Aig1
Name: androgen-induced 1
RGD ID: 1562920
Description: Predicted to enable hydrolase activity. Predicted to be involved in long-chain fatty acid catabolic process. Predicted to be located in membrane. Predicted to be active in endomembrane system. Orthologous to human AIG1 (androgen induced 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: androgen-induced gene 1 protein; LOC292486; RGD1562920; similar to Aig1 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.218,046,430 - 8,269,276 (-)NCBI
Rnor_6.0 Ensembl17,816,838 - 8,038,665 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.017,816,841 - 8,038,805 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.019,445,188 - 9,665,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418,456,587 - 8,688,694 (-)NCBIRGSC3.4rn4RGSC3.4
Celera16,534,096 - 6,755,228 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
9-hydroxyoctadecanoic acid  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
atrazine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP)
buspirone  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP,ISO)
choline  (ISO)
ciprofibrate  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
fenofibrate  (EXP)
ferric oxide  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
glyphosate  (EXP)
imidacloprid  (EXP)
indometacin  (ISO)
L-methionine  (ISO)
leflunomide  (EXP)
methapyrilene  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
O-methyleugenol  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP,ISO)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloroethene  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
trichostatin A  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:12477932   PMID:27018888  


Genomics

Comparative Map Data
Aig1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.218,046,430 - 8,269,276 (-)NCBI
Rnor_6.0 Ensembl17,816,838 - 8,038,665 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.017,816,841 - 8,038,805 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.019,445,188 - 9,665,474 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418,456,587 - 8,688,694 (-)NCBIRGSC3.4rn4RGSC3.4
Celera16,534,096 - 6,755,228 (-)NCBICelera
Cytogenetic Map1p13NCBI
AIG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6143,060,496 - 143,341,058 (+)EnsemblGRCh38hg38GRCh38
GRCh386143,059,213 - 143,343,883 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376143,380,350 - 143,665,020 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366143,423,716 - 143,703,134 (+)NCBINCBI36hg18NCBI36
Build 346143,423,715 - 143,703,134NCBI
Celera6144,122,434 - 144,401,847 (+)NCBI
Cytogenetic Map6q24.2NCBI
HuRef6140,946,083 - 141,225,487 (+)NCBIHuRef
CHM1_16143,644,596 - 143,924,037 (+)NCBICHM1_1
Aig1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391013,522,798 - 13,744,980 (-)NCBIGRCm39mm39
GRCm39 Ensembl1013,522,798 - 13,744,724 (-)Ensembl
GRCm381013,647,054 - 13,869,038 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,647,054 - 13,868,980 (-)EnsemblGRCm38mm10GRCm38
MGSCv371013,372,515 - 13,588,636 (-)NCBIGRCm37mm9NCBIm37
MGSCv361013,342,907 - 13,559,028 (-)NCBImm8
Celera1013,560,681 - 13,779,286 (-)NCBICelera
Cytogenetic Map10A2NCBI
Aig1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543617,056,843 - 17,285,022 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543617,056,630 - 17,285,022 (-)NCBIChiLan1.0ChiLan1.0
AIG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16145,553,009 - 145,837,677 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6145,553,306 - 145,837,049 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06140,828,806 - 141,116,373 (+)NCBIMhudiblu_PPA_v0panPan3
AIG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,643,994 - 34,884,445 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,643,764 - 34,884,119 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha135,541,853 - 35,782,595 (+)NCBI
ROS_Cfam_1.0134,819,244 - 35,059,897 (+)NCBI
UMICH_Zoey_3.1134,688,173 - 34,928,736 (+)NCBI
UNSW_CanFamBas_1.0134,570,772 - 34,811,562 (+)NCBI
UU_Cfam_GSD_1.0134,882,484 - 35,123,150 (+)NCBI
Aig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946129,607,540 - 129,845,341 (+)NCBI
SpeTri2.0NW_0049366252,790,215 - 3,028,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AIG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,913,239 - 22,165,083 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,913,237 - 22,165,078 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,300,407 - 24,621,623 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AIG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11329,903,099 - 30,180,050 (-)NCBI
ChlSab1.1 Ensembl1330,078,019 - 30,180,012 (-)Ensembl
Vero_WHO_p1.0NW_0236660402,035,062 - 2,309,265 (-)NCBI
Aig1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475310,917,856 - 11,175,696 (-)NCBI

Position Markers
D1Rat388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,086,468 - 8,086,692 (+)MAPPER
Rnor_6.017,855,813 - 7,856,036NCBIRnor6.0
Rnor_5.019,482,668 - 9,482,891UniSTSRnor5.0
RGSC_v3.418,503,976 - 8,504,199UniSTSRGSC3.4
RGSC_v3.418,503,976 - 8,504,199RGDRGSC3.4
RGSC_v3.118,503,976 - 8,504,199RGD
Celera16,572,802 - 6,573,025UniSTS
SHRSP x BN Map16.99UniSTS
SHRSP x BN Map16.99RGD
Cytogenetic Map1p13UniSTS
RH128712  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,046,813 - 8,046,992 (+)MAPPER
Rnor_6.017,817,225 - 7,817,403NCBIRnor6.0
Rnor_5.019,445,572 - 9,445,750UniSTSRnor5.0
RGSC_v3.418,456,971 - 8,457,149UniSTSRGSC3.4
Celera16,534,480 - 6,534,658UniSTS
RH 3.4 Map1102.5UniSTS
Cytogenetic Map1p13UniSTS
RH128951  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,046,484 - 8,046,675 (+)MAPPER
Rnor_6.017,816,896 - 7,817,086NCBIRnor6.0
Rnor_5.019,445,243 - 9,445,433UniSTSRnor5.0
RGSC_v3.418,456,642 - 8,456,832UniSTSRGSC3.4
Celera16,534,151 - 6,534,341UniSTS
RH 3.4 Map1104.1UniSTS
Cytogenetic Map1p13UniSTS
RH143713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,046,486 - 8,046,586 (+)MAPPER
Rnor_6.017,816,898 - 7,816,997NCBIRnor6.0
Rnor_5.019,445,245 - 9,445,344UniSTSRnor5.0
RGSC_v3.418,456,644 - 8,456,743UniSTSRGSC3.4
Celera16,534,153 - 6,534,252UniSTS
RH 3.4 Map1104.4UniSTS
Cytogenetic Map1p13UniSTS
AW535138  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,141,968 - 8,142,153 (+)MAPPER
Rnor_6.017,911,430 - 7,911,614NCBIRnor6.0
Rnor_5.019,538,311 - 9,538,495UniSTSRnor5.0
RGSC_v3.418,560,467 - 8,560,651UniSTSRGSC3.4
Celera16,628,170 - 6,628,354UniSTS
RH 3.4 Map1101.72UniSTS
Cytogenetic Map1p13UniSTS
BQ195873  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,052,566 - 8,052,773 (+)MAPPER
Rnor_6.017,822,978 - 7,823,184NCBIRnor6.0
Rnor_5.019,451,325 - 9,451,531UniSTSRnor5.0
RGSC_v3.418,462,724 - 8,462,930UniSTSRGSC3.4
Celera16,540,233 - 6,540,439UniSTS
RH 3.4 Map1104.6UniSTS
Cytogenetic Map1p13UniSTS
BM387506  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,199,572 - 8,199,727 (+)MAPPER
Rnor_6.017,968,856 - 7,969,010NCBIRnor6.0
Rnor_5.019,595,756 - 9,595,910UniSTSRnor5.0
RGSC_v3.418,619,028 - 8,619,182UniSTSRGSC3.4
Celera16,686,000 - 6,686,154UniSTS
RH 3.4 Map1102.32UniSTS
Cytogenetic Map1p13UniSTS
UMNe507  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,126,824 - 8,127,512 (+)MAPPER
mRatBN7.218,127,032 - 8,127,512 (+)MAPPER
Rnor_6.017,896,228 - 7,896,915NCBIRnor6.0
Rnor_6.017,896,436 - 7,896,915NCBIRnor6.0
Rnor_5.019,523,291 - 9,523,770UniSTSRnor5.0
Rnor_5.019,523,083 - 9,523,770UniSTSRnor5.0
RGSC_v3.418,545,478 - 8,545,957UniSTSRGSC3.4
RGSC_v3.418,545,270 - 8,545,957UniSTSRGSC3.4
Cytogenetic Map1p13UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124368159Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128468970Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1134993530Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1134993530Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1134993530Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1164407321Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)125439343579402Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)125439343579402Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)125439343579402Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)125439386904217Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1186804543724576Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1383915911314658Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1457869349578693Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15655769122614963Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1565577285706974Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:285
Count of miRNA genes:200
Interacting mature miRNAs:227
Transcripts:ENSRNOT00000046539
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 32 16 19 16 74 20 36 11
Low 15 25 25 25 8 11 15 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001134425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005500901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046539   ⟹   ENSRNOP00000039627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl17,816,838 - 8,038,665 (-)Ensembl
RefSeq Acc Id: NM_001134425   ⟹   NP_001127897
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,046,430 - 8,268,952 (-)NCBI
Rnor_6.017,816,841 - 8,038,609 (-)NCBI
Rnor_5.019,445,188 - 9,665,474 (-)NCBI
RGSC_v3.418,456,587 - 8,688,694 (-)RGD
Celera16,534,096 - 6,755,228 (-)RGD
Sequence:
RefSeq Acc Id: XM_006227642   ⟹   XP_006227704
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,050,032 - 8,269,167 (-)NCBI
Rnor_6.017,817,503 - 8,038,805 (-)NCBI
Rnor_5.019,445,188 - 9,665,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008758604   ⟹   XP_008756826
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,192,575 - 8,269,155 (-)NCBI
Rnor_6.017,957,154 - 8,038,801 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103609   ⟹   XP_038959537
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,050,032 - 8,269,276 (-)NCBI
RefSeq Acc Id: XM_039103610   ⟹   XP_038959538
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,050,032 - 8,269,266 (-)NCBI
RefSeq Acc Id: XM_039103611   ⟹   XP_038959539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,046,430 - 8,269,152 (-)NCBI
RefSeq Acc Id: XM_039103617   ⟹   XP_038959545
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,046,430 - 8,269,151 (-)NCBI
RefSeq Acc Id: XM_039103624   ⟹   XP_038959552
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,200,735 - 8,269,264 (-)NCBI
RefSeq Acc Id: XM_039103626   ⟹   XP_038959554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,050,032 - 8,097,483 (-)NCBI
RefSeq Acc Id: XM_039103631   ⟹   XP_038959559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,203,973 - 8,269,225 (-)NCBI
RefSeq Acc Id: XR_005500901
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,053,402 - 8,269,150 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001127897   ⟸   NM_001134425
- UniProtKB: B2RZC0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227704   ⟸   XM_006227642
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008756826   ⟸   XM_008758604
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSRNOP00000039627   ⟸   ENSRNOT00000046539
RefSeq Acc Id: XP_038959539   ⟸   XM_039103611
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959545   ⟸   XM_039103617
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959537   ⟸   XM_039103609
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959538   ⟸   XM_039103610
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959554   ⟸   XM_039103626
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038959552   ⟸   XM_039103624
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959559   ⟸   XM_039103631
- Peptide Label: isoform X8

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689498
Promoter ID:EPDNEW_R23
Type:initiation region
Name:Aig1_1
Description:androgen-induced 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.018,038,760 - 8,038,820EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562920 AgrOrtholog
Ensembl Genes ENSRNOG00000010753 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000039627 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046539 ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7319120 IMAGE-MGC_LOAD
InterPro Far-17a_AIG1 UniProtKB/TrEMBL
KEGG Report rno:292486 UniProtKB/TrEMBL
MGC_CLONE MGC:189539 IMAGE-MGC_LOAD
NCBI Gene 292486 ENTREZGENE
PANTHER PTHR10989 UniProtKB/TrEMBL
Pfam Far-17a_AIG1 UniProtKB/TrEMBL
PhenoGen Aig1 PhenoGen
UniProt B2RZC0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Aig1  androgen-induced 1  RGD1562920_predicted  similar to Aig1 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562920_predicted  similar to Aig1 protein (predicted)  LOC292486  similar to Aig1 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC292486  similar to Aig1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL