Adam20 (ADAM metallopeptidase domain 20) - Rat Genome Database

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Gene: Adam20 (ADAM metallopeptidase domain 20) Rattus norvegicus
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Symbol: Adam20
Name: ADAM metallopeptidase domain 20
RGD ID: 1562912
Description: INTERACTS WITH bisphenol A; (-)-epigallocatechin 3-gallate (ortholog); 2-hydroxypropanoic acid (ortholog)
Type: protein-coding
Also known as: disintegrin and metalloproteinase domain-containing protein 20; LOC290726; RGD1562912; similar to testase-9
RGD Orthologs
Human
Mouse
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_5.01639,125,073 - 39,133,049 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41639,654,619 - 39,662,865 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1634,779,981 - 34,788,223 (+)NCBICelera
Cytogenetic Map16p11NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
1. RGD automated data pipeline
2. RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Adam20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_5.01639,125,073 - 39,133,049 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41639,654,619 - 39,662,865 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1634,779,981 - 34,788,223 (+)NCBICelera
Cytogenetic Map16p11NCBI
ADAM20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1470,522,358 - 70,535,015 (-)EnsemblGRCh38hg38GRCh38
GRCh381470,520,817 - 70,564,742 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371470,989,075 - 71,001,721 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361470,058,831 - 70,071,485 (-)NCBINCBI36hg18NCBI36
Build 341470,058,831 - 70,071,485NCBI
Celera1451,053,033 - 51,065,687 (-)NCBI
Cytogenetic Map14q24.2NCBI
HuRef1451,157,745 - 51,170,399 (-)NCBIHuRef
CHM1_11470,927,229 - 70,939,873 (-)NCBICHM1_1
Adam20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39841,246,310 - 41,250,379 (+)NCBIGRCm39mm39
GRCm39 Ensembl841,246,310 - 41,250,340 (+)Ensembl
GRCm38840,793,273 - 40,797,342 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl840,793,273 - 40,797,303 (+)EnsemblGRCm38mm10GRCm38
MGSCv37841,878,627 - 41,882,657 (+)NCBIGRCm37mm9NCBIm37
MGSCv36842,293,672 - 42,295,954 (+)NCBImm8
Celera843,426,818 - 43,430,857 (+)NCBICelera
Cytogenetic Map8A4NCBI
LOC100739754
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl794,127,694 - 94,129,907 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1794,125,901 - 94,131,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,392,940 - 100,439,037 (-)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:15
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000042018
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_001056657
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1634,779,981 - 34,788,223 (+)RGD
RefSeq Acc Id: XM_006253103   ⟹   XP_006253165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.01639,125,073 - 39,133,049 (+)NCBI
Protein Sequences
GenBank Protein EDL78957 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_006253165   ⟸   XM_006253103


Additional Information

Database Acc Id Source(s)
NCBI Gene 290726 ENTREZGENE
PhenoGen Adam20 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-12 Adam20  ADAM metallopeptidase domain 20  RGD1562912  similar to testase-9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562912  similar to testase-9   RGD1562912_predicted  similar to testase-9 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562912_predicted  similar to testase-9 (predicted)  LOC290726  similar to testase-9  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC290726  similar to testase-9      Symbol and Name status set to provisional 70820 PROVISIONAL