Imported Annotations - OMIM | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PHARC syndrome | ISO | RGD:1314604 | 7240710 | OMIM | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Variant Visualizer (Genomic Variants) |
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 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | OMIM Disease Annotation Pipeline |
| 3. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 4. | RGD automated import pipeline for gene-chemical interactions |
| 5. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
References - uncuratedGenomics
Comparative Map Data| Abhd12 (Rattus norvegicus - Norway rat) |
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| ABHD12 (Homo sapiens - human) |
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| Abhd12 (Mus musculus - house mouse) |
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| Abhd12 (Chinchilla lanigera - long-tailed chinchilla) |
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| ABHD12 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| ABHD12 (Canis lupus familiaris - dog) |
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| Abhd12 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| ABHD12 (Sus scrofa - pig) |
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| Abhd12 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| AA924737 |
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| RH140375 |
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| BF414488 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 38 | 55 | 39 | 19 | 39 | 1 | 2 | 74 | 35 | 41 | 11 | 1 |
| Low | 5 | 2 | 2 | 2 | 7 | 9 | 7 | ||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001024314 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| GenBank Nucleotide | AABR07054292 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07054293 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01025813 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01025814 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC078918 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH474050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000010641 ⟹ ENSRNOP00000010640 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001024314 ⟹ NP_001019485 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
GGCGCTGGTCCTAGCGGGCGCCGCGGCCTGGGGCTGGGGATGTGACCAGCAGTGGGCTCCCAGChide sequence |
Protein Sequences| Protein RefSeqs | NP_001019485 | (Get FASTA) | NCBI Sequence Viewer |
| GenBank Protein | AAH78918 | (Get FASTA) | NCBI Sequence Viewer |
| EDL86133 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86134 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86135 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86136 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL86137 | (Get FASTA) | NCBI Sequence Viewer | |
| Q6AYT7 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001019485 ⟸ NM_001024314 |
| - UniProtKB: | Q6AYT7 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MRKRTEPVTLEHERCAASGSSSSGSAAAALDADCSLKQNLRLAGKGTAEPHSASDAGMKRALGRhide sequence |
| RefSeq Acc Id: | ENSRNOP00000010640 ⟸ ENSRNOT00000010641 |
TranscriptomePromoters| RGD ID: | 13692519 | ||||||||
| Promoter ID: | EPDNEW_R3044 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Abhd12_1 | ||||||||
| Description: | abhydrolase domain containing 12 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1562570 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000036934 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000010640 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000010641 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Gene3D-CATH | 3.40.50.1820 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7096446 | IMAGE-MGC_LOAD |
| InterPro | AB_hydrolase | UniProtKB/Swiss-Prot |
| ABHD12 | UniProtKB/Swiss-Prot | |
| Hydrolase_4 | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:499913 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:93694 | IMAGE-MGC_LOAD |
| NCBI Gene | 499913 | ENTREZGENE |
| PANTHER | PTHR12277:SF61 | UniProtKB/Swiss-Prot |
| Pfam | Hydrolase_4 | UniProtKB/Swiss-Prot |
| PhenoGen | Abhd12 | PhenoGen |
| Superfamily-SCOP | SSF53474 | UniProtKB/Swiss-Prot |
| UniGene | Rn.128955 | ENTREZGENE |
| UniProt | ABD12_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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| 2020-02-13 | Abhd12 | abhydrolase domain containing 12, lysophospholipase | Abhd12 | abhydrolase domain containing 12 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-03-05 | Abhd12 | abhydrolase domain containing 12 | LOC499913 | similar to Protein C20orf22 homolog | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-02-09 | LOC499913 | similar to Protein C20orf22 homolog | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Abhd12 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1562570 |
| Created: | 2006-02-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-06-09 |
| Status: | ACTIVE |
