Fam3a (FAM3 metabolism regulating signaling molecule A) - Rat Genome Database

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Gene: Fam3a (FAM3 metabolism regulating signaling molecule A) Rattus norvegicus
Analyze
Symbol: Fam3a
Name: FAM3 metabolism regulating signaling molecule A
RGD ID: 1562076
Description: Predicted to be involved in antifungal humoral response; antimicrobial humoral immune response mediated by antimicrobial peptide; and negative regulation of antifungal innate immune response. Predicted to be active in extracellular space. Orthologous to human FAM3A (FAM3 metabolism regulating signaling molecule A); INTERACTS WITH bisphenol A; flutamide; leflunomide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: family with sequence similarity 3, member A; LOC501664; RGD1562076; similar to RIKEN cDNA 1810037C20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,166,716 - 152,175,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,165,535 - 152,175,362 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,307,842 - 154,316,453 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X157,870,653 - 157,879,264 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X155,542,869 - 155,551,480 (-)NCBIRnor_WKY
Rnor_6.0X156,319,687 - 156,328,974 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,319,687 - 156,328,309 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,059,824 - 152,068,448 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,218,068 - 160,226,679 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1135,721,330 - 135,729,941 (+)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18212107   PMID:24857820   PMID:29241198   PMID:29802941  


Genomics

Comparative Map Data
Fam3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,166,716 - 152,175,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX152,165,535 - 152,175,362 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX154,307,842 - 154,316,453 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X157,870,653 - 157,879,264 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X155,542,869 - 155,551,480 (-)NCBIRnor_WKY
Rnor_6.0X156,319,687 - 156,328,974 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,319,687 - 156,328,309 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,059,824 - 152,068,448 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,218,068 - 160,226,679 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1135,721,330 - 135,729,941 (+)NCBICelera
Cytogenetic MapXq37NCBI
FAM3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X154,506,171 - 154,516,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX154,506,159 - 154,516,242 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,734,502 - 153,744,556 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,387,700 - 153,397,567 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X153,298,209 - 153,308,077NCBI
CeleraX153,894,374 - 153,905,613 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,310,150 - 142,321,316 (-)NCBIHuRef
CHM1_1X153,644,976 - 153,656,226 (-)NCBICHM1_1
T2T-CHM13v2.0X152,742,672 - 152,752,723 (-)NCBIT2T-CHM13v2.0
Fam3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,427,816 - 73,436,880 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX73,428,325 - 73,436,878 (-)EnsemblGRCm39 Ensembl
GRCm38X74,384,210 - 74,393,274 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,384,719 - 74,393,272 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,630,059 - 71,638,478 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,637,462 - 70,645,994 (-)NCBIMGSCv36mm8
CeleraX65,638,901 - 65,647,332 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
Fam3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555801,029,553 - 1,036,849 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555801,025,481 - 1,036,752 (-)NCBIChiLan1.0ChiLan1.0
FAM3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X153,817,983 - 153,828,158 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,817,983 - 153,828,152 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X143,947,867 - 143,957,966 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAM3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,205,043 - 122,212,626 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,205,683 - 122,212,195 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,346,702 - 125,353,799 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX125,346,698 - 125,353,854 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,115,702 - 121,123,139 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,630,779 - 123,638,216 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X123,392,553 - 123,399,990 (-)NCBIUU_Cfam_GSD_1.0
Fam3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,512,052 - 119,521,135 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049368091,248,865 - 1,258,894 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,014,714 - 125,025,104 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,015,985 - 125,025,119 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,560,320 - 143,569,466 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,744,577 - 128,759,246 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,744,458 - 128,759,202 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606566,739,665 - 66,749,899 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946972,676 - 982,049 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946974,903 - 981,798 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH129745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,166,809 - 152,166,991 (-)MAPPERmRatBN7.2
Rnor_6.0X156,328,023 - 156,328,204NCBIRnor6.0
Rnor_5.01152,068,160 - 152,068,341UniSTSRnor5.0
RGSC_v3.4X160,226,404 - 160,226,585UniSTSRGSC3.4
Celera1135,729,666 - 135,729,847UniSTS
Cytogenetic MapXq37UniSTS
AI454555  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X152,166,234 - 152,166,445 (-)MAPPERmRatBN7.2
Rnor_6.0X156,328,569 - 156,328,779NCBIRnor6.0
Rnor_5.01152,068,706 - 152,068,916UniSTSRnor5.0
RGSC_v3.4X160,226,950 - 160,227,160UniSTSRGSC3.4
Celera1135,730,212 - 135,730,422UniSTS
Cytogenetic MapXq37UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:57
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000056316, ENSRNOT00000065166
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 57 41 19 41 1 73 35 34 11
Low 8 8 10 1 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000079378   ⟹   ENSRNOP00000070783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,166,711 - 152,175,362 (-)Ensembl
Rnor_6.0 EnsemblX156,319,801 - 156,328,309 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091147   ⟹   ENSRNOP00000070848
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,166,716 - 152,175,327 (-)Ensembl
Rnor_6.0 EnsemblX156,319,687 - 156,328,298 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096091   ⟹   ENSRNOP00000097414
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,169,034 - 152,175,327 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097035   ⟹   ENSRNOP00000079854
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,165,535 - 152,175,289 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100531   ⟹   ENSRNOP00000093382
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX152,165,535 - 152,174,756 (-)Ensembl
RefSeq Acc Id: NM_001109324   ⟹   NP_001102794
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X152,166,716 - 152,175,327 (-)NCBI
Rnor_6.0X156,319,687 - 156,328,298 (+)NCBI
Rnor_5.01152,059,824 - 152,068,448 (+)NCBI
RGSC_v3.4X160,218,068 - 160,226,679 (+)RGD
Celera1135,721,330 - 135,729,941 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001102794 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI69081 (Get FASTA)   NCBI Sequence Viewer  
  EDL84966 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102794   ⟸   NM_001109324
- UniProtKB: B5DFJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070783   ⟸   ENSRNOT00000079378
RefSeq Acc Id: ENSRNOP00000070848   ⟸   ENSRNOT00000091147
RefSeq Acc Id: ENSRNOP00000097414   ⟸   ENSRNOT00000096091
RefSeq Acc Id: ENSRNOP00000079854   ⟸   ENSRNOT00000097035
RefSeq Acc Id: ENSRNOP00000093382   ⟸   ENSRNOT00000100531
Protein Domains
ILEI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DFJ2-F1-model_v2 AlphaFold B5DFJ2 1-227 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702039
Promoter ID:EPDNEW_R12563
Type:initiation region
Name:Fam3a_1
Description:family with sequence similarity 3, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X156,319,736 - 156,319,796EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562076 AgrOrtholog
BioCyc Gene G2FUF-620 BioCyc
Ensembl Genes ENSRNOG00000060623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000070783.2 UniProtKB/TrEMBL
  ENSRNOP00000070848 ENTREZGENE
  ENSRNOP00000070848.2 UniProtKB/TrEMBL
  ENSRNOP00000079854.1 UniProtKB/TrEMBL
  ENSRNOP00000093382.1 UniProtKB/TrEMBL
  ENSRNOP00000097414.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079378.2 UniProtKB/TrEMBL
  ENSRNOT00000091147 ENTREZGENE
  ENSRNOT00000091147.2 UniProtKB/TrEMBL
  ENSRNOT00000096091.1 UniProtKB/TrEMBL
  ENSRNOT00000097035.1 UniProtKB/TrEMBL
  ENSRNOT00000100531.1 UniProtKB/TrEMBL
InterPro FAM3 UniProtKB/TrEMBL
  FAM3A UniProtKB/TrEMBL
  ILEI/PANDER_dom UniProtKB/TrEMBL
  ILEI_FAM3C UniProtKB/TrEMBL
KEGG Report rno:501664 UniProtKB/TrEMBL
NCBI Gene 501664 ENTREZGENE
PANTHER PTHR14592 UniProtKB/TrEMBL
  PTHR14592:SF11 UniProtKB/TrEMBL
Pfam ILEI UniProtKB/TrEMBL
PhenoGen Fam3a PhenoGen
UniProt A0A0G2JYT6_RAT UniProtKB/TrEMBL
  A0A0G2JYZ3_RAT UniProtKB/TrEMBL
  A0A8I5ZRV3_RAT UniProtKB/TrEMBL
  A0A8I6AIW4_RAT UniProtKB/TrEMBL
  A0A8I6GM21_RAT UniProtKB/TrEMBL
  B5DFJ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-30 Fam3a  FAM3 metabolism regulating signaling molecule A  Fam3a  family with sequence similarity 3, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam3a  family with sequence similarity 3, member A  RGD1562076_predicted  similar to RIKEN cDNA 1810037C20 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562076_predicted  similar to RIKEN cDNA 1810037C20 (predicted)  LOC501664  similar to RIKEN cDNA 1810037C20  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501664  similar to RIKEN cDNA 1810037C20      Symbol and Name status set to provisional 70820 PROVISIONAL