 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Barbato C, etal., Front Cell Neurosci. 2014 Feb 13;8:37. doi: 10.3389/fncel.2014.00037. eCollection 2014. |
| 2. | Brunkhorst A, etal., Mol Cell Neurosci. 2005 Jun;29(2):250-8. |
| 3. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 4. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 5. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 12220523 14648869 15381419 17087506 17467196 18298663 18801335 19790105 20395553 20403074 23118896 24143168 29911972 30361391 |
Genomics
Comparative Map Data| Ranbp9 (Rattus norvegicus - Norway rat) |
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| RANBP9 (Homo sapiens - human) |
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| Ranbp9 (Mus musculus - house mouse) |
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| Ranbp9 (Chinchilla lanigera - long-tailed chinchilla) |
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| RANBP9 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| RANBP9 (Canis lupus familiaris - dog) |
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| Ranbp9 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| RANBP9 (Sus scrofa - pig) |
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| RANBP9 (Chlorocebus sabaeus - African green monkey) |
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| Ranbp9 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| D17Rat102 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 38 | 55 | 39 | 19 | 39 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
| Low | 5 | 2 | 2 | 2 | |||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | XM_002725261 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_008771586 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07027313 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07027314 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027315 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07027316 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01090587 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01090588 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01090589 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ218715 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000024174 ⟹ ENSRNOP00000024174 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_002725261 ⟹ XP_002725307 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CGCCTCCCGGCCTGGCCGTGGGCCCGGGCTCGGTCGCAGGCGTCCCGGTCCCGGGCCTGGCGGChide sequence |
| RefSeq Acc Id: | XM_008771586 ⟹ XP_008769808 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
ATGAAGATAAAAGAGGACACGGGGGGTGGAGACGGGGCGACAGGTATAAGCAACGAGTGGGCGAhide sequence |
Protein Sequences| Protein RefSeqs | XP_002725307 | (Get FASTA) | NCBI Sequence Viewer |
| XP_008769808 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_002725307 ⟸ XM_002725261 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFhide sequence |
| RefSeq Acc Id: | XP_008769808 ⟸ XM_008771586 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MKIKEDTGGGDGATGISNEWASLAISTSLAPVRGAFGSRGGGDLRASRRSSGGDSSGGQQTAAGhide sequence |
| RefSeq Acc Id: | ENSRNOP00000024174 ⟸ ENSRNOT00000024174 |
Protein Domains
B30.2/SPRY CTLH LisH
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1561940 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000017951 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000024174 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000024174 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.60.120.920 | UniProtKB/TrEMBL |
| InterPro | B30.2/SPRY | UniProtKB/TrEMBL |
| B30.2/SPRY_sf | UniProtKB/TrEMBL | |
| ConA-like_dom | UniProtKB/TrEMBL | |
| CRA_dom | UniProtKB/TrEMBL | |
| CTLH/CRA | UniProtKB/TrEMBL | |
| CTLH_C | UniProtKB/TrEMBL | |
| LisH_dimerisation | UniProtKB/TrEMBL | |
| SPRY_RanBP9/10 | UniProtKB/TrEMBL | |
| SPRY_rcpt | UniProtKB/TrEMBL | |
| NCBI Gene | 364686 | ENTREZGENE |
| Pfam | CLTH | UniProtKB/TrEMBL |
| LisH | UniProtKB/TrEMBL | |
| SPRY | UniProtKB/TrEMBL | |
| PhenoGen | Ranbp9 | PhenoGen |
| PROSITE | B302_SPRY | UniProtKB/TrEMBL |
| CTLH | UniProtKB/TrEMBL | |
| LISH | UniProtKB/TrEMBL | |
| SMART | CRA | UniProtKB/TrEMBL |
| CTLH | UniProtKB/TrEMBL | |
| LisH | UniProtKB/TrEMBL | |
| SPRY | UniProtKB/TrEMBL | |
| Superfamily-SCOP | ConA_like_lec_gl | UniProtKB/TrEMBL |
| UniGene | Rn.155466 | ENTREZGENE |
| UniProt | F1LVV3_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2012-10-11 | Ranbp9 | RAN binding protein 9 | RGD1561940 | similar to KB07 protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | RGD1561940 | similar to KB07 protein | RGD1561940_predicted | similar to KB07 protein (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2006-03-07 | RGD1561940_predicted | similar to KB07 protein (predicted) | LOC364686 | similar to KB07 protein | Symbol and Name status set to approved | 1299863 | APPROVED |
| 2006-02-09 | LOC364686 | similar to KB07 protein | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on Ranbp9 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1561940 |
| Created: | 2006-02-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-09-01 |
| Status: | ACTIVE |
