Slc25a36l1 (solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1) - Rat Genome Database

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Gene: Slc25a36l1 (solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Slc25a36l1
Name: solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1
RGD ID: 1561851
Description: Predicted to be located in mitochondrial inner membrane; INTERACTS WITH 6-propyl-2-thiouracil; amitrole; amphetamine.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07072639.2; LOC364991; RGD1561851; similar to RIKEN cDNA C330005L02; similar to solute carrier family 25, member 36; solute carrier family 25 member 36-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81949,851,197 - 49,853,288 (-)NCBIGRCr8
mRatBN7.21932,941,523 - 32,943,368 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1932,942,127 - 32,943,222 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01937,019,990 - 37,021,997 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,020,852 - 37,021,958 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01947,885,365 - 47,887,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41934,878,831 - 34,879,927 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1932,371,045 - 32,372,600 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:56
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000018433, ENSRNOT00000037120
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61328Eae8Experimental allergic encephalomyelitis QTL 84nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)192481604133061905Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)192481797839654489Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)192753020737947399Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)192753020737947399Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)192753020737947399Rat

Markers in Region
UniSTS:547052  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21932,942,189 - 32,943,209 (+)MAPPERmRatBN7.2
Rnor_6.01937,020,660 - 37,021,840NCBIRnor6.0
Rnor_5.01947,885,859 - 47,887,039UniSTSRnor5.0
Celera1932,371,424 - 32,372,443UniSTS
Cytogenetic Map8q31UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000084366   ⟹   ENSRNOP00000069300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1932,942,127 - 32,943,222 (-)Ensembl
RefSeq Acc Id: XM_039098089   ⟹   XP_038954017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81949,851,197 - 49,853,288 (-)NCBI
mRatBN7.21932,941,523 - 32,943,368 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954017 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069300.2
RefSeq Acc Id: XP_038954017   ⟸   XM_039098089
- UniProtKB: A0A0G2JV03 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000069300   ⟸   ENSRNOT00000084366

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JV03-F1-model_v2 AlphaFold A0A0G2JV03 1-153 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5864 BioCyc
Ensembl Genes ENSRNOG00000054284 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084366.2 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
  SLC25A33/36-like UniProtKB/TrEMBL
NCBI Gene 364991 ENTREZGENE
PANTHER MITOCHONDRIAL CARRIER PROTEIN RIM2 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 25 MEMBER 36 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PhenoGen Slc25a36l1 PhenoGen
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE SOLCAR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000054284 RatGTEx
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
UniProt A0A0G2JV03 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Slc25a36l1  solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1  AABR07072639.2    Data merged from RGD:15008563 737654 PROVISIONAL
2019-11-08 AABR07072639.2        Symbol and Name status set to provisional 45752 PROVISIONAL
2013-05-24 Slc25a36l1  solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1  LOC686689  similar to solute carrier family 25, member 36  Data merged from RGD:1594959 1643240 APPROVED
2012-10-11 Slc25a36l1  solute carrier family 25 (pyrimidine nucleotide carrier ), member 36-like 1  RGD1561851  similar to RIKEN cDNA C330005L02  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561851  similar to RIKEN cDNA C330005L02   RGD1561851_predicted  similar to RIKEN cDNA C330005L02 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561851_predicted  similar to RIKEN cDNA C330005L02 (predicted)  LOC364991  similar to RIKEN cDNA C330005L02  Symbol and Name status set to approved 1299863 APPROVED