Slc9a7 (solute carrier family 9 member A7) - Rat Genome Database

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Gene: Slc9a7 (solute carrier family 9 member A7) Rattus norvegicus
Analyze
Symbol: Slc9a7
Name: solute carrier family 9 member A7
RGD ID: 1561385
Description: Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of Golgi lumen acidification; and sodium ion import across plasma membrane. Predicted to be located in recycling endosome membrane and trans-Golgi network. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 108. Orthologous to human SLC9A7 (solute carrier family 9 member A7); INTERACTS WITH 17alpha-ethynylestradiol; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Nhe7; sodium/hydrogen exchanger 7; solute carrier family 9 (sodium/hydrogen exchanger), isoform 7; solute carrier family 9 (sodium/hydrogen exchanger), member 7; solute carrier family 9, member 7; solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX2,214,441 - 2,388,012 (+)Ensembl
Rnor_6.0X2,434,918 - 2,615,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX2,435,305 - 2,614,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X13,633,105 - 13,808,939 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX2,743,256 - 2,912,530 (+)NCBICelera
Cytogenetic MapXq11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11279194   PMID:15840657   PMID:30335141  


Genomics

Comparative Map Data
Slc9a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX2,214,441 - 2,388,012 (+)Ensembl
Rnor_6.0X2,434,918 - 2,615,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX2,435,305 - 2,614,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X13,633,105 - 13,808,939 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX2,743,256 - 2,912,530 (+)NCBICelera
Cytogenetic MapXq11NCBI
SLC9A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X46,599,251 - 46,759,118 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX46,599,251 - 46,759,118 (-)EnsemblGRCh38hg38GRCh38
GRCh37X46,458,686 - 46,618,553 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X46,351,317 - 46,503,416 (-)NCBINCBI36hg18NCBI36
Build 34X46,222,626 - 46,374,726NCBI
CeleraX50,658,215 - 50,810,335 (-)NCBI
Cytogenetic MapXp11.3NCBI
HuRefX44,170,288 - 44,254,619 (-)NCBIHuRef
CHM1_1X46,490,827 - 46,650,713 (-)NCBICHM1_1
T2T-CHM13v2.0X46,006,221 - 46,166,134 (-)NCBI
Slc9a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X19,965,090 - 20,158,274 (-)NCBIGRCm39mm39
GRCm39 EnsemblX19,971,993 - 20,158,046 (-)Ensembl
GRCm38X20,098,851 - 20,292,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,105,754 - 20,291,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X19,682,881 - 19,868,890 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X19,262,714 - 19,448,723 (-)NCBImm8
CeleraX18,234,853 - 18,421,077 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
Slc9a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555161,286,070 - 1,428,789 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555161,286,070 - 1,428,789 (+)NCBIChiLan1.0ChiLan1.0
SLC9A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X46,898,953 - 47,057,674 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX46,906,644 - 47,057,705 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X39,037,499 - 39,197,421 (-)NCBIMhudiblu_PPA_v0panPan3
SLC9A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X40,240,169 - 40,389,167 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX40,245,654 - 40,389,423 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX14,616,012 - 14,764,673 (-)NCBI
ROS_Cfam_1.0X40,378,163 - 40,523,311 (-)NCBI
ROS_Cfam_1.0 EnsemblX40,379,864 - 40,523,703 (-)Ensembl
UMICH_Zoey_3.1X40,363,040 - 40,511,661 (-)NCBI
UNSW_CanFamBas_1.0X40,350,111 - 40,499,013 (-)NCBI
UU_Cfam_GSD_1.0X40,443,100 - 40,592,043 (-)NCBI
Slc9a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X32,605,876 - 32,746,453 (-)NCBI
SpeTri2.0NW_00493650212,450,702 - 12,587,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX41,236,246 - 41,398,999 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X41,233,308 - 41,399,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X46,076,182 - 46,199,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X43,806,085 - 43,958,985 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX43,806,349 - 43,958,959 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660769,060,922 - 9,208,835 (-)NCBIVero_WHO_p1.0
Slc9a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248873,408,109 - 3,563,639 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248873,403,764 - 3,563,699 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC152551P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,592 - 2,281,856 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,869 - 2,481,133 (-)MAPPERmRatBN7.2
mRatBN7.21211,665,050 - 11,665,317 (+)MAPPERmRatBN7.2
Rnor_6.0X2,509,978 - 2,510,240NCBIRnor6.0
Rnor_6.01213,717,782 - 13,718,048NCBIRnor6.0
Rnor_5.01215,747,795 - 15,748,061UniSTSRnor5.0
Rnor_5.0X3,300,207 - 3,300,469UniSTSRnor5.0
Celera1213,454,382 - 13,454,648UniSTS
CeleraX3,004,715 - 3,004,978UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
PMC275467P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,592 - 2,281,843 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,882 - 2,481,133 (-)MAPPERmRatBN7.2
mRatBN7.21211,665,063 - 11,665,317 (+)MAPPERmRatBN7.2
Rnor_6.0X2,509,978 - 2,510,227NCBIRnor6.0
Rnor_6.01213,717,795 - 13,718,048NCBIRnor6.0
Rnor_5.01215,747,808 - 15,748,061UniSTSRnor5.0
Rnor_5.0X3,300,207 - 3,300,456UniSTSRnor5.0
Celera1213,454,395 - 13,454,648UniSTS
CeleraX3,004,728 - 3,004,978UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
PMC150974P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,665,202 - 11,666,036 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,934 - 13,718,767NCBIRnor6.0
Rnor_5.01215,747,947 - 15,748,780UniSTSRnor5.0
RGSC_v3.41212,049,161 - 12,049,994UniSTSRGSC3.4
RGSC_v3.4X13,700,285 - 13,700,891UniSTSRGSC3.4
Celera1213,454,534 - 13,455,367UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS
RH138299  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,332,855 - 2,332,978 (+)MAPPERmRatBN7.2
Rnor_6.0X2,559,083 - 2,559,205NCBIRnor6.0
Rnor_5.0X3,349,312 - 3,349,434UniSTSRnor5.0
RGSC_v3.4X13,753,169 - 13,753,291UniSTSRGSC3.4
CeleraX2,857,748 - 2,857,870UniSTS
Cytogenetic MapXq12UniSTS
Actb  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,288 - 2,281,798 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,927 - 2,481,437 (-)MAPPERmRatBN7.2
Rnor_6.0X2,509,674 - 2,510,182NCBIRnor6.0
Rnor_5.0X3,299,903 - 3,300,411UniSTSRnor5.0
RGSC_v3.4X13,700,476 - 13,700,985UniSTSRGSC3.4
Celera1213,453,754 - 13,454,454UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
PMC85795P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X2,281,589 - 2,282,085 (+)MAPPERmRatBN7.2
mRatBN7.2X2,480,640 - 2,481,136 (-)MAPPERmRatBN7.2
mRatBN7.21211,664,354 - 11,665,320 (+)MAPPERmRatBN7.2
Rnor_6.01213,717,086 - 13,718,051NCBIRnor6.0
Rnor_6.0X2,509,975 - 2,510,469NCBIRnor6.0
Rnor_5.0X3,300,204 - 3,300,698UniSTSRnor5.0
Rnor_5.01215,747,099 - 15,748,064UniSTSRnor5.0
Celera1213,453,686 - 13,454,651UniSTS
CeleraX3,004,486 - 3,004,981UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144797211374346Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:121
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000005623
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 50
Low 2 24 32 19 5 19 8 11 24 32 35 11 8
Below cutoff 1 18 22 22 22 3 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005623   ⟹   ENSRNOP00000005623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX2,214,441 - 2,388,012 (+)Ensembl
Rnor_6.0 EnsemblX2,435,305 - 2,614,770 (+)Ensembl
RefSeq Acc Id: NM_001108242   ⟹   NP_001101712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X2,214,441 - 2,388,012 (+)NCBI
Rnor_6.0X2,435,305 - 2,614,770 (+)NCBI
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBI
RGSC_v3.4X13,633,105 - 13,808,939 (+)RGD
CeleraX2,743,256 - 2,912,530 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256636   ⟹   XP_006256698
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBI
Rnor_6.0X2,434,918 - 2,615,936 (+)NCBI
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256637   ⟹   XP_006256699
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBI
Rnor_6.0X2,434,919 - 2,615,936 (+)NCBI
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001101712 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387931 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256698 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256699 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97690 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001101712   ⟸   NM_001108242
- Sequence:
RefSeq Acc Id: XP_006256698   ⟸   XM_006256636
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006256699   ⟸   XM_006256637
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000005623   ⟸   ENSRNOT00000005623

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCI2-F1-model_v2 AlphaFold D3ZCI2 1-359 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701700
Promoter ID:EPDNEW_R12224
Type:single initiation site
Name:Slc9a7_1
Description:solute carrier family 9 member A7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X2,435,264 - 2,435,324EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561385 AgrOrtholog
BioCyc Gene G2FUF-3172 BioCyc
Ensembl Genes ENSRNOG00000004150 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005623 ENTREZGENE
  ENSRNOP00000005623.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005623 ENTREZGENE
  ENSRNOT00000005623.7 UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  Cation/H_exchanger_cons-reg UniProtKB/TrEMBL
  NaH_exchanger UniProtKB/TrEMBL
  NHE-6/7/9 UniProtKB/TrEMBL
KEGG Report rno:317170 UniProtKB/TrEMBL
NCBI Gene 317170 ENTREZGENE
PANTHER Cation/H_exchanger_cons-reg UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/TrEMBL
PhenoGen Slc9a7 PhenoGen
PRINTS NAHEXCHNGR UniProtKB/TrEMBL
  NAHEXCHNGR6 UniProtKB/TrEMBL
TIGRFAMs b_cpa1 UniProtKB/TrEMBL
UniProt D3ZCI2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Slc9a7  solute carrier family 9 member A7  Slc9a7  solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc9a7  solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7  Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-02 Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), member 7  Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), isoform 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), isoform 7  Slc9a7_predicted  solute carrier family 9 (sodium/hydrogen exchanger), member 7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc9a7_predicted  solute carrier family 9 (sodium/hydrogen exchanger), member 7 (predicted)    solute carrier family 9, member 7 (predicted)  Name updated 1299863 APPROVED
2006-03-07 Slc9a7_predicted  solute carrier family 9, member 7 (predicted)  Slc9a7  solute carrier family 9, member 7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 Slc9a7  solute carrier family 9, member 7      Symbol and Name status set to provisional 70820 PROVISIONAL