Slc9a7 (solute carrier family 9 member A7) - Rat Genome Database

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Gene: Slc9a7 (solute carrier family 9 member A7) Rattus norvegicus
Analyze
Symbol: Slc9a7
Name: solute carrier family 9 member A7
RGD ID: 1561385
Description: Predicted to have potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of Golgi lumen acidification; and sodium ion import across plasma membrane. Predicted to localize to several cellular components, including integral component of membrane; recycling endosome membrane; and trans-Golgi network. Human ortholog(s) of this gene implicated in X-linked intellectual developmental disorder 108. Orthologous to human SLC9A7 (solute carrier family 9 member A7); INTERACTS WITH 17alpha-ethynylestradiol; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Nhe7; sodium/hydrogen exchanger 7; solute carrier family 9 (sodium/hydrogen exchanger), isoform 7; solute carrier family 9 (sodium/hydrogen exchanger), member 7; solute carrier family 9, member 7; solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBI
Rnor_6.0 EnsemblX2,435,305 - 2,614,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X2,434,918 - 2,615,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X13,633,105 - 13,808,939 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX2,743,256 - 2,912,530 (+)NCBICelera
Cytogenetic MapXq11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:11279194   PMID:15840657   PMID:30335141  


Genomics

Comparative Map Data
Slc9a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBI
Rnor_6.0 EnsemblX2,435,305 - 2,614,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X2,434,918 - 2,615,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X13,633,105 - 13,808,939 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX2,743,256 - 2,912,530 (+)NCBICelera
Cytogenetic MapXq11NCBI
SLC9A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX46,599,251 - 46,759,118 (-)EnsemblGRCh38hg38GRCh38
GRCh38X46,599,251 - 46,759,163 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X46,458,686 - 46,618,553 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X46,351,317 - 46,503,416 (-)NCBINCBI36hg18NCBI36
Build 34X46,222,626 - 46,374,726NCBI
CeleraX50,658,215 - 50,810,335 (-)NCBI
Cytogenetic MapXp11.3NCBI
HuRefX44,170,288 - 44,254,619 (-)NCBIHuRef
CHM1_1X46,490,827 - 46,650,713 (-)NCBICHM1_1
Slc9a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X19,965,090 - 20,158,274 (-)NCBIGRCm39mm39
GRCm39 EnsemblX19,971,993 - 20,158,046 (-)Ensembl
GRCm38X20,098,851 - 20,292,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX20,105,754 - 20,291,807 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X19,682,881 - 19,868,890 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X19,262,714 - 19,448,723 (-)NCBImm8
CeleraX18,234,853 - 18,421,077 (-)NCBICelera
Cytogenetic MapXA1.3NCBI
Slc9a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555161,286,070 - 1,428,789 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555161,286,070 - 1,428,789 (+)NCBIChiLan1.0ChiLan1.0
SLC9A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X46,898,953 - 47,057,674 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX46,906,644 - 47,057,705 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X39,037,499 - 39,197,421 (-)NCBIMhudiblu_PPA_v0panPan3
SLC9A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X40,240,169 - 40,389,167 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX40,245,654 - 40,389,423 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX14,616,012 - 14,764,673 (-)NCBI
ROS_Cfam_1.0X40,378,163 - 40,523,311 (-)NCBI
UMICH_Zoey_3.1X40,363,040 - 40,511,661 (-)NCBI
UNSW_CanFamBas_1.0X40,350,111 - 40,499,013 (-)NCBI
UU_Cfam_GSD_1.0X40,443,100 - 40,592,043 (-)NCBI
Slc9a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X32,605,876 - 32,746,453 (-)NCBI
SpeTri2.0NW_00493650212,450,702 - 12,587,196 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX41,236,246 - 41,399,024 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X41,233,308 - 41,399,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X46,076,182 - 46,199,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC9A7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X43,806,085 - 43,958,985 (-)NCBI
ChlSab1.1 EnsemblX43,806,349 - 43,958,959 (-)Ensembl
Slc9a7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248873,403,764 - 3,563,699 (-)NCBI

Position Markers
PMC152551P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X2,509,978 - 2,510,240NCBIRnor6.0
Rnor_6.01213,717,782 - 13,718,048NCBIRnor6.0
Rnor_5.01215,747,795 - 15,748,061UniSTSRnor5.0
Rnor_5.0X3,300,207 - 3,300,469UniSTSRnor5.0
Celera1213,454,382 - 13,454,648UniSTS
CeleraX3,004,715 - 3,004,978UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS
PMC275467P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X2,509,978 - 2,510,227NCBIRnor6.0
Rnor_6.01213,717,795 - 13,718,048NCBIRnor6.0
Rnor_5.01215,747,808 - 15,748,061UniSTSRnor5.0
Rnor_5.0X3,300,207 - 3,300,456UniSTSRnor5.0
Celera1213,454,395 - 13,454,648UniSTS
CeleraX3,004,728 - 3,004,978UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS
PMC150974P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01213,717,934 - 13,718,767NCBIRnor6.0
Rnor_5.01215,747,947 - 15,748,780UniSTSRnor5.0
RGSC_v3.4X13,700,285 - 13,700,891UniSTSRGSC3.4
RGSC_v3.41212,049,161 - 12,049,994UniSTSRGSC3.4
Celera1213,454,534 - 13,455,367UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS
RH138299  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X2,559,083 - 2,559,205NCBIRnor6.0
Rnor_5.0X3,349,312 - 3,349,434UniSTSRnor5.0
RGSC_v3.4X13,753,169 - 13,753,291UniSTSRGSC3.4
CeleraX2,857,748 - 2,857,870UniSTS
Cytogenetic MapXq12UniSTS
Actb  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X2,509,674 - 2,510,182NCBIRnor6.0
Rnor_5.0X3,299,903 - 3,300,411UniSTSRnor5.0
RGSC_v3.4X13,700,476 - 13,700,985UniSTSRGSC3.4
Celera1213,453,754 - 13,454,454UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map12p11UniSTS
PMC85795P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X2,509,975 - 2,510,469NCBIRnor6.0
Rnor_6.01213,717,086 - 13,718,051NCBIRnor6.0
Rnor_5.01215,747,099 - 15,748,064UniSTSRnor5.0
Rnor_5.0X3,300,204 - 3,300,698UniSTSRnor5.0
Celera1213,453,686 - 13,454,651UniSTS
CeleraX3,004,486 - 3,004,981UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic MapXq12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X144092703Rat
70166Bp65Blood pressure QTL 655.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X166245312370298Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X166245321592783Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X166260933443848Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X183816624331837Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:121
Interacting mature miRNAs:132
Transcripts:ENSRNOT00000005623
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 50
Low 2 24 32 19 5 19 8 11 24 32 35 11 8
Below cutoff 1 18 22 22 22 3 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000005623   ⟹   ENSRNOP00000005623
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX2,435,305 - 2,614,770 (+)Ensembl
RefSeq Acc Id: NM_001108242   ⟹   NP_001101712
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X2,214,441 - 2,388,012 (+)NCBI
Rnor_6.0X2,435,305 - 2,614,770 (+)NCBI
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBI
RGSC_v3.4X13,633,105 - 13,808,939 (+)RGD
CeleraX2,743,256 - 2,912,530 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256636   ⟹   XP_006256698
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBI
Rnor_6.0X2,434,918 - 2,615,936 (+)NCBI
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256637   ⟹   XP_006256699
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2X2,214,064 - 2,395,052 (+)NCBI
Rnor_6.0X2,434,919 - 2,615,936 (+)NCBI
Rnor_5.0X3,226,147 - 3,409,761 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001101712 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256698 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256699 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL97690 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001101712   ⟸   NM_001108242
- UniProtKB: D3ZCI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256698   ⟸   XM_006256636
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006256699   ⟸   XM_006256637
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000005623   ⟸   ENSRNOT00000005623
Protein Domains
Na_H_Exchanger

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701700
Promoter ID:EPDNEW_R12224
Type:single initiation site
Name:Slc9a7_1
Description:solute carrier family 9 member A7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X2,435,264 - 2,435,324EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561385 AgrOrtholog
Ensembl Genes ENSRNOG00000004150 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000005623 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005623 ENTREZGENE, UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/TrEMBL
  Cation/H_exchanger_cons-reg UniProtKB/TrEMBL
KEGG Report rno:317170 UniProtKB/TrEMBL
NCBI Gene 317170 ENTREZGENE
PANTHER Cation/H_exchanger_cons-reg UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/TrEMBL
PhenoGen Slc9a7 PhenoGen
UniProt D3ZCI2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Slc9a7  solute carrier family 9 member A7  Slc9a7  solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc9a7  solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7  Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), member 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-02 Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), member 7  Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), isoform 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Slc9a7  solute carrier family 9 (sodium/hydrogen exchanger), isoform 7  Slc9a7_predicted  solute carrier family 9 (sodium/hydrogen exchanger), member 7 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc9a7_predicted  solute carrier family 9 (sodium/hydrogen exchanger), member 7 (predicted)    solute carrier family 9, member 7 (predicted)  Name updated 1299863 APPROVED
2006-03-07 Slc9a7_predicted  solute carrier family 9, member 7 (predicted)  Slc9a7  solute carrier family 9, member 7  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 Slc9a7  solute carrier family 9, member 7      Symbol and Name status set to provisional 70820 PROVISIONAL