Pdzd4 (PDZ domain containing 4) - Rat Genome Database

Name: Pdzd4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pdzd4 (PDZ domain containing 4) Rattus norvegicus

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Symbol:

Pdzd4

Name:

PDZ domain containing 4

RGD ID:

1561214

Description:

Orthologous to human PDZD4 (PDZ domain containing 4); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC293856; PDZ domain-containing protein 4; RGD1561214; similar to PDZ domain containing 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDZD4 (PDZ domain containing 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Pdzd4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdzd4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDZD4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDZD4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdzd4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDZD4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDZD4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdzd4 (PDZ domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PDZD4 (PDZ domain containing 4)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pdzd4 (PDZ domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdzd4 (PDZ domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C50F7.6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	Slip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pdzd4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,681,717 - 156,712,031 (-)	NCBI		GRCr8
mRatBN7.2	X	151,530,390 - 151,560,779 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,530,390 - 151,560,826 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,671,555 - 153,701,275 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,234,785 - 157,264,506 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,906,609 - 154,936,330 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	156,963,343 - 156,993,591 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	156,963,870 - 156,993,591 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,711,639 - 152,741,657 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,716,489 - 159,746,210 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	136,329,561 - 136,359,280 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

autistic disorder (ISO)

Barth syndrome (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

Chromosome Xq28 Duplication Syndrome (ISO)

COVID-19 (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

favism (ISO)

immunodeficiency 33 (ISO)

intellectual disability (ISO)

microcephaly (ISO)

movement disease (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

severe congenital encephalopathy due to MECP2 mutation (ISO)

Splenomegaly (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP,ISO)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (EXP)

choline (ISO)

cisplatin (ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

fenvalerate (EXP)

folic acid (ISO)

genistein (EXP)

L-methionine (ISO)

maneb (ISO)

paraquat (ISO)

pentanal (ISO)

potassium dichromate (ISO)

propanal (ISO)

sodium arsenite (ISO)

toluene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Pdzd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,681,717 - 156,712,031 (-)	NCBI		GRCr8
mRatBN7.2	X	151,530,390 - 151,560,779 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,530,390 - 151,560,826 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,671,555 - 153,701,275 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	157,234,785 - 157,264,506 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,906,609 - 154,936,330 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	156,963,343 - 156,993,591 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	156,963,870 - 156,993,591 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	152,711,639 - 152,741,657 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,716,489 - 159,746,210 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	136,329,561 - 136,359,280 (+)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

PDZD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	153,802,166 - 153,830,544 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	153,802,166 - 153,830,565 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	153,067,621 - 153,095,999 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	152,720,817 - 152,749,197 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	152,588,469 - 152,616,850	NCBI
Celera	X	153,301,304 - 153,329,683 (-)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	141,724,655 - 141,753,458 (-)	NCBI		HuRef
CHM1_1	X	152,942,032 - 152,970,411 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	152,075,829 - 152,104,208 (-)	NCBI		T2T-CHM13v2.0

Pdzd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,836,963 - 72,868,649 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,836,965 - 72,868,575 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,793,357 - 73,825,043 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,793,359 - 73,824,969 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	71,038,696 - 71,070,308 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	70,046,077 - 70,077,689 (-)	NCBI		MGSCv36	mm8
Celera	X	65,045,630 - 65,077,262 (-)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.41	NCBI

Pdzd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955580	512,925 - 535,917 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955580	512,963 - 535,911 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDZD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,842,925 - 153,871,329 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,846,530 - 153,875,015 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	143,352,944 - 143,381,428 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	153,240,182 - 153,267,880 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	153,240,182 - 153,267,874 (-)	Ensembl	panpan1.1		panPan2

PDZD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	121,616,122 - 121,647,326 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	121,616,114 - 121,647,697 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	106,945,175 - 106,976,007 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	124,757,487 - 124,788,337 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	124,757,479 - 124,788,851 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	120,526,759 - 120,557,616 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	123,041,753 - 123,072,883 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	122,803,951 - 122,834,817 (-)	NCBI		UU_Cfam_GSD_1.0

Pdzd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,943,641 - 118,970,161 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936809	679,938 - 707,938 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936809	681,412 - 707,932 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDZD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	124,544,944 - 124,567,369 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	124,543,845 - 124,567,477 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	142,108,442 - 142,132,247 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDZD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	128,229,495 - 128,255,341 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	128,229,300 - 128,255,312 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	66,096,825 - 66,122,903 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdzd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624946	477,156 - 496,750 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624946	477,125 - 496,871 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pdzd4
19 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	314
Count of miRNA genes:	198
Interacting mature miRNAs:	239
Transcripts:	ENSRNOT00000056376
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634346	Insul4	Insulin level QTL 4	0		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	X	126975089	152453651	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	113937816	152453651	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			21	21		21			236		24
Low	21	63	139	71	69	71	15	15	14	84	121	37	15
Below cutoff		78	61	49		49	21	28		31			9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077109 ⟹ ENSRNOP00000072313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,530,390 - 151,560,826 (-)	Ensembl
Rnor_6.0 Ensembl	X	156,963,870 - 156,993,591 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100363 ⟹ ENSRNOP00000082756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,530,390 - 151,560,826 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108114 ⟹ ENSRNOP00000088024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,530,390 - 151,560,826 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115095 ⟹ ENSRNOP00000093710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	151,530,390 - 151,560,826 (-)	Ensembl

RefSeq Acc Id:

NM_001135836 ⟹ NP_001129308

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,681,717 - 156,711,436 (-)	NCBI
mRatBN7.2	X	151,530,390 - 151,560,112 (-)	NCBI
Rnor_6.0	X	156,963,870 - 156,993,591 (+)	NCBI
Rnor_5.0	1	152,711,639 - 152,741,657 (+)	NCBI
RGSC_v3.4	X	159,716,489 - 159,746,210 (-)	RGD
Celera	1	136,329,561 - 136,359,280 (+)	NCBI

Sequence:

show sequence

ATGGGATGTAATATGTGCGTGGTCCAGAAACCGGAGGAGCAATACAAAGTGATGCTTCAGGTGA
ACGGGAAGGAGCTCTCCAAGCTGTCTCAGGAGCAAACCCTAGAGGCCCTGCGTGCCTCCAAGGA
GCCCCTGGTGATCCAGGTGCTAAGACGCAGCCCCCGTCTGCGGGGGGACAGCTCCTGCCATGAC
CTTCAGCTGGTGGACAGTGGCACTCAGACCGACATCACCTTCGAGCATATCATGGCGCTGGGCA
AGCTGCGCCCGCCCACCCCACCCATGGGCATCTTGGAGCCCCCCCCCATCAGCCATGAGTATTA
TGACCCAGCGGAGTTCATGGAGGGCGGCCCGCAGGAGGCAGAGCGAATGGACGAGCTGGAGTAC
GAGGAGGTGGAGCTGTGTAAAAACAGCCACCAAGACAAGCTGGGCCTGATGGTATGCTATCGCA
CAGATGATGAGGAGGACCTAGGCATCTACGTTGGAGAGGTAAATCCCAACAGCATTGCAGCCAA
AGATGGCCGGATCCGTGAGGGAGACAGAATCATCCAGATTAATGGAATGGATGTCCAAAACCGA
GAAGAGGCAGTAGCCATCCTGAGCCAGGAGGAGAACACCAACATCTCCCTGCTGGTGGCCCGGC
CTGAGAGCCAGCTAGCAAAGCGGTGGAAAGACAGTGACAGAGATGACTTCCTAGATGACTTTGG
ATCTGAGAATGAAGGGGACCTTCGTACCCGGAAGCTAAAGTCCCCCCCTGTCCAGCAGACTGGA
AATGATGAGAAGGGGGCTCCTGATGGGGGCCCTGGCTTGAGCAACAGCCAGGACCTGGACAGCG
GGGTAGGCCGGACAGATGAGAGTACCCGCAACGAAGAGAGCTCTGAACATGACCTGCTCGGGGA
TGAACCTCCCAGCACCACCAACACCCCTGGAAGCCTGCGCAAGTTCGGTCTACAAGGGGATGCC
CTACAGAGCAGGGACTTCCACTTCAGCATGGATTCTCTGCTAGCTGAGGGGGCAGGGCTGGGAG
GGGCTGACCTGCCTGGGCTCACTGATGAGGAGTATGAACGCTACCGGGAGCTGCTAGAGATCAA
GTGCCACCTGGAAAATGGCAACCAGCTGGGTATCCTCTTCTCCCGGGCCTCCAGTGGCAACAGT
GCCCTAGATGTCAACCGCAATGAGAGCCTAGGCCATGAGATGGCCATGCTAGAGGAAGAGCTTC
GGCACCTAGAGTTCAAGTGTCGCAATATCTTGCGGGCACAGAAGATGCAGCAGTTGCGGGAGCG
CTGTATGAAGGCCTGGCTGCTGGAGGAAGAGAGTCTCTATGACCTGGCAGCCAGTGAGCCAAAA
AAGCATGAGCTGTCTGATATCTCTGAACTGCCAGAGAAATCAGACAAGGATAGTACCAGCGCCT
ACAACACTGGGGAGAGCTGCCGCAGCACTCCACTGCTTGTGGAGCCTCTGCCTGAGAGCCCCCT
GAAGCGATCTGCTGCTGGCAATTCCAACTTGAACCGGACCCCTTCTGGCCCTCCTGTCACCACC
CACCTCAAGGCTGCTCCTTCACCAGGGAGCCCAGCCAAGTTCCGATCACTTTCTCGGGATCCTG
AAGTGGGTCGTAGACAACACACAGAAGAGCGTGTCCGCCGCAGCACCAAGACAAGTGTTACTCT
GGAGCGTGTGGGCCCTGAAGGTAGCCCTTACCTCTCTAGGCGCCATCGTGGCCAGGAGATCGAG
CAGTACCACAGCTGTGTGCAGTTGGCCCCGCCACGTACCCTGGAGGATCTGAGCCATGGCTCCT
TGAGCTTGGCTAGTGGTTCTCGGGTGGGCGGGGTGGTGGCTGCAGCTGTTGAAGCACCCCGCAT
GGAGTGGAAAGTGAAGGTGCGAAGTGATGGGACCCGCTATGTGGCCAAGCGGCCTGTACGAGAT
CGGCTGCTGAAGGCCAGAGCCCTGAAGATCCGAGAGGAGCGCAGTGGTATGACCACTGATGATG
ATGCAGTAAGTGAGATGAAGATGGGCCGCTACTGGAGCAAAGAAGAGAGGAAGCAACACCTGAT
TCGAGCACGGGAACAAAGGAAGCGTCGTGAATTCATGATGCAAAGCCGTCTGGAGTGTCTAAGG
GAGCAGCAGAACGGTGACAGCAAACCTGAGCTCAACATTATTGCGCTGAGCCACCGTAAGACCA
TGAAGAAGCGAAACAAGAAGATTCTGGACAACTGGATCACCATCCAGGAGATGCTGGCCCATGG
TGCCCGCTCAGCTGATGGGAAAAGGATCTACAACCCTCTGCTCTCTGTCACCACTGTCTGAGCT
GCTCCAGCGGGAGCCCAGCCCAGGCCTAGAGAGCCTGACCCTCACCCTCCCTTAGAATCTAGTG
TGTGTGTCGATGTGTGTGCTTGCACGATGTGCTCATGCACACTCCTACCTGTATATGTATGTGT
GCACAGGACTTTGGTAAATAGAAAGCCCCAAGAAGGGACACTTCTCTTACACCTAGTTCCTTCT
CCCCAAGAAGCTATGCCAACAACCAGCATAGAGGCATACCCATAAAGAGCACCTCTGTGTGCGT
ACACATGGTATTCTTGCTATGTTCTTGGAGACAGGGAAGTCAGTGCAGAGAGGTGAGGTGAACT
ATCCTAAGCACAAGAGAATGTCCAGCTTCATGCTGAGAACGACCTCTCCCCTCCTAGGAGCTGC
AATTATTTGTAGACAAAGGCAACCCTGAATTTTGTGATTTTTCTTCTTTTTTGTGCTTGCCAAT
AGTTGTTTTCTGTTTTGTGGACCTGCTCTGGGGGCTGGCAGCTCCTTTAGGTAGCCTGGCAAAG
GTGGACCCCACTGAGTGCTGGCTGAGAAGGAGGTTGGGGGGAGGAAAAAAAGGGAGGGCTGGGT
GGGAGGGAAAGGAAGAAGATGGGTTAGAATAAAAAGCAGCTGTCCTGGTGGCCTCTACCCTGAG
GAGTAGCAAGGGGGCTCTTCCTTGGCTTTCAAGGCTTAACCATGAGGCCCACTACTCTCACCAG
TGACTGAAGGAGAGTGAGATCACAGGGATTTTGGGCACAGTATCCATGCAAAAGAATTCTATGT
CAACTGGGACAGAGCCACTCTTCTCAGTGGCCTAAAGCAAGGAGTGCCAAACCAAATGAGCAAC
ACAGAAGACCTTACCTAGTTTAGGGATGATCTGGTGGGAGTTGGGAGGCCTGGGCCCAATGAAA
GGAAGGTGGGCTAAGAGATGCCTAGGACCCACTTAAATGTGCCACTTGTTTGGTGCCTCTCAGG
CTTGGTGAAGCTCACTGGATGCTACAGGATGCCCCTGATCCCCACCTACATCCCAAGAATAAAG
CAAGCTGCCTTTTTACTCTGTTGA

hide sequence

RefSeq Acc Id:

NM_001414724 ⟹ NP_001401653

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,681,717 - 156,712,031 (-)	NCBI
mRatBN7.2	X	151,530,390 - 151,560,707 (-)	NCBI

RefSeq Acc Id:

XM_006229564 ⟹ XP_006229626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,681,721 - 156,711,509 (-)	NCBI
mRatBN7.2	X	151,530,392 - 151,560,779 (-)	NCBI
Rnor_6.0	X	156,963,343 - 156,993,589 (+)	NCBI
Rnor_5.0	1	152,711,639 - 152,741,657 (+)	NCBI

Sequence:

show sequence

GGCTACAGCTGGCGCGGGCCTGGCCGCCTCTCCATCGGCGGGCCGGGCCGCGTCGCCAAGCCCG
GAGGCTGGACTCCCTGGGCTGATAGCCATGGGCGGGAGCCGGAGACGGCTGCGGCAAAGGCAGC
GGCAGCGGCCGGTCCCGCGGGCGGGGAGCCGTGTGGCCCACGGCCCCTGACAGTCCCTGACCGC
CCCGGCGGGCAAGCGCGCTCCCGCGCCTCCTGGGGTGGGGGGGGGCCGTAGCCAGGCAACGCCC
GGCGCGCCCGCCCATCCCCCGCCGCCCTTTTTTCCCCTGGCTGGGTGCGCAGGAGCATGCCTGT
GTCTGGCCTCGGCCAGCAAAGAGTTAAGTCGAGAGGCGTGGAGCTGCCTTCCTCTTGGGGGCGT
GCCCCCCTCCCCCGCTAGGCGGCTCGGCCCCCCGCGGTAGGGTATGGCCCCGGGCCCAAGCCCG
GGACCCGTGGTCCCACGCGCTGACCAGTGAAAGACTCCTTCCTCTTCCCGCTCTCCTCTTTCCC
TCGCCGGCCAGCACCATGGGATGTAATATGTGCGTGGTCCAGAAACCGGAGGAGCAATACAAAG
TGATGCTTCAGGTGAACGGGAAGGAGCTCTCCAAGCTGTCTCAGGAGCAAACCCTAGAGGCCCT
GCGTGCCTCCAAGGAGCCCCTGGTGATCCAGGTGCTAAGACGCAGCCCCCGTCTGCGGGGGGAC
AGCTCCTGCCATGACCTTCAGCTGGTGGACAGTGGCACTCAGACCGACATCACCTTCGAGCATA
TCATGGCGCTGGGCAAGCTGCGCCCGCCCACCCCACCCATGGGCATCTTGGAGCCGTACGTCCT
CTCTGAGCTCCCCCCCATCAGCCATGAGTATTATGACCCAGCGGAGTTCATGGAGGGCGGCCCG
CAGGAGGCAGAGCGAATGGACGAGCTGGAGTACGAGGAGGTGGAGCTGTGTAAAAACAGCCACC
AAGACAAGCTGGGCCTGATGGTATGCTATCGCACAGATGATGAGGAGGACCTAGGCATCTACGT
TGGAGAGATTAATGGAATGGATGTCCAAAACCGAGAAGAGGCAGTAGCCATCCTGAGCCAGGAG
GAGAACACCAACATCTCCCTGCTGGTGGCCCGGCCTGAGAGCCAGCTAGCAAAGCGGTGGAAAG
ACAGTGACAGAGATGACTTCCTAGATGACTTTGGATCTGAGAATGAAGGGGACCTTCGTACCCG
GAAGCTAAAGTCCCCCCCTGTCCAGCAGACTGGAAATGATGAGAAGGGGGCTCCTGATGGGGGC
CCTGGCTTGAGCAACAGCCAGGACCTGGACAGCGGGGTAGGCCGGACAGATGAGAGTACCCGCA
ACGAAGAGAGCTCTGAACATGACCTGCTCGGGGATGAACCTCCCAGCACCACCAACACCCCTGG
AAGCCTGCGCAAGTTCGGTCTACAAGGGGATGCCCTACAGAGCAGGGACTTCCACTTCAGCATG
GATTCTCTGCTAGCTGAGGGGGCAGGGCTGGGAGGGGCTGACCTGCCTGGGCTCACTGATGAGG
AGTATGAACGCTACCGGGAGCTGCTAGAGATCAAGTGCCACCTGGAAAATGGCAACCAGCTGGG
TATCCTCTTCTCCCGGGCCTCCAGTGGCAACAGTGCCCTAGATGTCAACCGCAATGAGAGCCTA
GGCCATGAGATGGCCATGCTAGAGGAAGAGCTTCGGCACCTAGAGTTCAAGTGTCGCAATATCT
TGCGGGCACAGAAGATGCAGCAGTTGCGGGAGCGCTGTATGAAGGCCTGGCTGCTGGAGGAAGA
GAGTCTCTATGACCTGGCAGCCAGTGAGCCAAAAAAGCATGAGCTGTCTGATATCTCTGAACTG
CCAGAGAAATCAGACAAGGATAGTACCAGCGCCTACAACACTGGGGAGAGCTGCCGCAGCACTC
CACTGCTTGTGGAGCCTCTGCCTGAGAGCCCCCTGAAGCGATCTGCTGCTGGCAATTCCAACTT
GAACCGGACCCCTTCTGGCCCTCCTGTCACCACCCACCTCAAGGCTGCTCCTTCACCAGGGAGC
CCAGCCAAGTTCCGATCACTTTCTCGGGATCCTGAAGTGGGTCGTAGACAACACACAGAAGAGC
GTGTCCGCCGCAGCACCAAGACAAGTGTTACTCTGGAGCGTGTGGGCCCTGAAGGTAGCCCTTA
CCTCTCTAGGCGCCATCGTGGCCAGGAGATCGAGCAGTACCACAGCTGTGTGCAGTTGGCCCCG
CCACGTACCCTGGAGGATCTGAGCCATGGCTCCTTGAGCTTGGCTAGTGGTTCTCGGGTGGGCG
GGGTGGTGGCTGCAGCTGTTGAAGCACCCCGCATGGAGTGGAAAGTGAAGGTGCGAAGTGATGG
GACCCGCTATGTGGCCAAGCGGCCTGTACGAGATCGGCTGCTGAAGGCCAGAGCCCTGAAGATC
CGAGAGGAGCGCAGTGGTATGACCACTGATGATGATGCAGTAAGTGAGATGAAGATGGGCCGCT
ACTGGAGCAAAGAAGAGAGGAAGCAACACCTGATTCGAGCACGGGAACAAAGGAAGCGTCGTGA
ATTCATGATGCAAAGCCGTCTGGAGTGTCTAAGGGAGCAGCAGAACGGTGACAGCAAACCTGAG
CTCAACATTATTGCGCTGAGCCACCGTAAGACCATGAAGAAGCGAAACAAGAAGATTCTGGACA
ACTGGATCACCATCCAGGAGATGCTGGCCCATGGTGCCCGCTCAGCTGATGGGAAAAGGATCTA
CAACCCTCTGCTCTCTGTCACCACTGTCTGAGCTGCTCCAGCGGGAGCCCAGCCCAGGCCTAGA
GAGCCTGACCCTCACCCTCCCTTAGAATCTAGTGTGTGTGTCGATGTGTGTGCTTGCACGATGT
GCTCATGCACACTCCTACCTGTATATGTATGTGTGCACAGGACTTTGGTAAATAGAAAGCCCCA
AGAAGGGACACTTCTCTTACACCTAGTTCCTTCTCCCCAAGAAGCTATGCCAACAACCAGCATA
GAGGCATACCCATAAAGAGCACCTCTGTGTGCGTACACATGGTATTCTTGCTATGTTCTTGGAG
ACAGGGAAGTCAGTGCAGAGAGGTGAGGTGAACTATCCTAAGCACAAGAGAATGTCCAGCTTCA
TGCTGAGAACGACCTCTCCCCTCCTAGGAGCTGCAATTATTTGTAGACAAAGGCAACCCTGAAT
TTTGTGATTTTTCTTCTTTTTTGTGCTTGCCAATAGTTGTTTTCTGTTTTGTGGACCTGCTCTG
GGGGCTGGCAGCTCCTTTAGGTAGCCTGGCAAAGGTGGACCCCACTGAGTGCTGGCTGAGAAGG
AGGTTGGGGGGAGGAAAAAAAGGGAGGGCTGGGTGGGAGGGAAAGGAAGAAGATGGGTTAGAAT
AAAAAGCAGCTGTCCTGGTGGCCTCTACCCTGAGGAGTAGCAAGGGGGCTCTTCCTTGGCTTTC
AAGGCTTAACCATGAGGCCCACTACTCTCACCAGTGACTGAAGGAGAGTGAGATCACAGGGATT
TTGGGCACAGTATCCATGCAAAAGAATTCTATGTCAACTGGGACAGAGCCACTCTTCTCAGTGG
CCTAAAGCAAGGAGTGCCAAACCAAATGAGCAACACAGAAGACCTTACCTAGTTTAGGGATGAT
CTGGTGGGAGTTGGGAGGCCTGGGCCCAATGAAAGGAAGGTGGGCTAAGAGATGCCTAGGACCC
ACTTAAATGTGCCACTTGTTTGGTGCCTCTCAGGCTTGGTGAAGCTCACTGGATGCTACAGGAT
GCCCCTGATCCCCACCTACATCCCAAGAATAAAGCAAGCTGCCTTTTTACTCTGTT

hide sequence

RefSeq Acc Id:

XM_006229565 ⟹ XP_006229627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,681,721 - 156,711,511 (-)	NCBI
mRatBN7.2	X	151,530,392 - 151,560,773 (-)	NCBI
Rnor_6.0	X	156,963,343 - 156,993,589 (+)	NCBI
Rnor_5.0	1	152,711,639 - 152,741,657 (+)	NCBI

Sequence:

show sequence

GGCTACAGCTGGCGCGGGCCTGGCCGCCTCTCCATCGGCGGGCCGGGCCGCGTCGCCAAGCCCG
GAGGCTGGACTCCCTGGGCTGATAGCCATGGGCGGGAGCCGGAGACGGCTGCGGCAAAGGCAGC
GGCAGCGGCCGGTCCCGCGGGCGGGGAGCCGTGTGGCCCACGGCCCCTGACAGTCCCTGACCGC
CCCGGCGGGCAAGCGCGCTCCCGCGCCTCCTGGGGTGGGGGGGGGCCGTAGCCAGGCAACGCCC
GGCGCGCCCGCCCATCCCCCGCCGCCCTTTTTTCCCCTGGCTGGGTGCGCAGGAGCATGCCTGT
GTCTGGCCTCGGCCAGCAAAGAGTTAAGTCGAGAGGCGTGGAGCTGCCTTCCTCTTGGGGGCGT
GCCCCCCTCCCCCGCTAGGCGGCTCGGCCCCCCGCGGTAGGGTATGGCCCCGGGCCCAAGCCCG
GGACCCGTGGTCCCACGCGCTGACCAGTGAAAGACTCCTTCCTCTTCCCGCTCTCCTCTTTCCC
TCGCCGGCCAGCACCATGGGATGTAATATGTGCGTGGTCCAGAAACCGGAGGAGCAATACAAAG
TGATGCTTCAGGAGGTGGAGCTGTGTAAAAACAGCCACCAAGACAAGCTGGGCCTGATGGTATG
CTATCGCACAGATGATGAGGAGGACCTAGGCATCTACGTTGGAGAGGTAAATCCCAACAGCATT
GCAGCCAAAGATGGCCGGATCCGTGAGGGAGACAGAATCATCCAGATTAATGGAATGGATGTCC
AAAACCGAGAAGAGGCAGTAGCCATCCTGAGCCAGGAGGAGAACACCAACATCTCCCTGCTGGT
GGCCCGGCCTGAGAGCCAGCTAGCAAAGCGGTGGAAAGACAGTGACAGAGATGACTTCCTAGAT
GACTTTGGATCTGAGAATGAAGGGGACCTTCGTACCCGGAAGCTAAAGTCCCCCCCTGTCCAGC
AGACTGGAAATGATGAGAAGGGGGCTCCTGATGGGGGCCCTGGCTTGAGCAACAGCCAGGACCT
GGACAGCGGGGTAGGCCGGACAGATGAGAGTACCCGCAACGAAGAGAGCTCTGAACATGACCTG
CTCGGGGATGAACCTCCCAGCACCACCAACACCCCTGGAAGCCTGCGCAAGTTCGGTCTACAAG
GGGATGCCCTACAGAGCAGGGACTTCCACTTCAGCATGGATTCTCTGCTAGCTGAGGGGGCAGG
GCTGGGAGGGGCTGACCTGCCTGGGCTCACTGATGAGGAGTATGAACGCTACCGGGAGCTGCTA
GAGATCAAGTGCCACCTGGAAAATGGCAACCAGCTGGGTATCCTCTTCTCCCGGGCCTCCAGTG
GCAACAGTGCCCTAGATGTCAACCGCAATGAGAGCCTAGGCCATGAGATGGCCATGCTAGAGGA
AGAGCTTCGGCACCTAGAGTTCAAGTGTCGCAATATCTTGCGGGCACAGAAGATGCAGCAGTTG
CGGGAGCGCTGTATGAAGGCCTGGCTGCTGGAGGAAGAGAGTCTCTATGACCTGGCAGCCAGTG
AGCCAAAAAAGCATGAGCTGTCTGATATCTCTGAACTGCCAGAGAAATCAGACAAGGATAGTAC
CAGCGCCTACAACACTGGGGAGAGCTGCCGCAGCACTCCACTGCTTGTGGAGCCTCTGCCTGAG
AGCCCCCTGAAGCGATCTGCTGCTGGCAATTCCAACTTGAACCGGACCCCTTCTGGCCCTCCTG
TCACCACCCACCTCAAGGCTGCTCCTTCACCAGGGAGCCCAGCCAAGTTCCGATCACTTTCTCG
GGATCCTGAAGTGGGTCGTAGACAACACACAGAAGAGCGTGTCCGCCGCAGCACCAAGACAAGT
GTTACTCTGGAGCGTGTGGGCCCTGAAGGTAGCCCTTACCTCTCTAGGCGCCATCGTGGCCAGG
AGATCGAGCAGTACCACAGCTGTGTGCAGTTGGCCCCGCCACGTACCCTGGAGGATCTGAGCCA
TGGCTCCTTGAGCTTGGCTAGTGGTTCTCGGGTGGGCGGGGTGGTGGCTGCAGCTGTTGAAGCA
CCCCGCATGGAGTGGAAAGTGAAGGTGCGAAGTGATGGGACCCGCTATGTGGCCAAGCGGCCTG
TACGAGATCGGCTGCTGAAGGCCAGAGCCCTGAAGATCCGAGAGGAGCGCAGTGGTATGACCAC
TGATGATGATGCAGTAAGTGAGATGAAGATGGGCCGCTACTGGAGCAAAGAAGAGAGGAAGCAA
CACCTGATTCGAGCACGGGAACAAAGGAAGCGTCGTGAATTCATGATGCAAAGCCGTCTGGAGT
GTCTAAGGGAGCAGCAGAACGGTGACAGCAAACCTGAGCTCAACATTATTGCGCTGAGCCACCG
TAAGACCATGAAGAAGCGAAACAAGAAGATTCTGGACAACTGGATCACCATCCAGGAGATGCTG
GCCCATGGTGCCCGCTCAGCTGATGGGAAAAGGATCTACAACCCTCTGCTCTCTGTCACCACTG
TCTGAGCTGCTCCAGCGGGAGCCCAGCCCAGGCCTAGAGAGCCTGACCCTCACCCTCCCTTAGA
ATCTAGTGTGTGTGTCGATGTGTGTGCTTGCACGATGTGCTCATGCACACTCCTACCTGTATAT
GTATGTGTGCACAGGACTTTGGTAAATAGAAAGCCCCAAGAAGGGACACTTCTCTTACACCTAG
TTCCTTCTCCCCAAGAAGCTATGCCAACAACCAGCATAGAGGCATACCCATAAAGAGCACCTCT
GTGTGCGTACACATGGTATTCTTGCTATGTTCTTGGAGACAGGGAAGTCAGTGCAGAGAGGTGA
GGTGAACTATCCTAAGCACAAGAGAATGTCCAGCTTCATGCTGAGAACGACCTCTCCCCTCCTA
GGAGCTGCAATTATTTGTAGACAAAGGCAACCCTGAATTTTGTGATTTTTCTTCTTTTTTGTGC
TTGCCAATAGTTGTTTTCTGTTTTGTGGACCTGCTCTGGGGGCTGGCAGCTCCTTTAGGTAGCC
TGGCAAAGGTGGACCCCACTGAGTGCTGGCTGAGAAGGAGGTTGGGGGGAGGAAAAAAAGGGAG
GGCTGGGTGGGAGGGAAAGGAAGAAGATGGGTTAGAATAAAAAGCAGCTGTCCTGGTGGCCTCT
ACCCTGAGGAGTAGCAAGGGGGCTCTTCCTTGGCTTTCAAGGCTTAACCATGAGGCCCACTACT
CTCACCAGTGACTGAAGGAGAGTGAGATCACAGGGATTTTGGGCACAGTATCCATGCAAAAGAA
TTCTATGTCAACTGGGACAGAGCCACTCTTCTCAGTGGCCTAAAGCAAGGAGTGCCAAACCAAA
TGAGCAACACAGAAGACCTTACCTAGTTTAGGGATGATCTGGTGGGAGTTGGGAGGCCTGGGCC
CAATGAAAGGAAGGTGGGCTAAGAGATGCCTAGGACCCACTTAAATGTGCCACTTGTTTGGTGC
CTCTCAGGCTTGGTGAAGCTCACTGGATGCTACAGGATGCCCCTGATCCCCACCTACATCCCAA
GAATAAAGCAAGCTGCCTTTTTACTCTGTT

hide sequence

RefSeq Acc Id:

XM_039099532 ⟹ XP_038955460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,681,721 - 156,711,511 (-)	NCBI
mRatBN7.2	X	151,530,392 - 151,560,775 (-)	NCBI

RefSeq Acc Id:

XM_039099533 ⟹ XP_038955461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	156,681,721 - 156,711,509 (-)	NCBI
mRatBN7.2	X	151,530,392 - 151,560,774 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001129308	(Get FASTA)	NCBI Sequence Viewer
	NP_001401653	(Get FASTA)	NCBI Sequence Viewer
	XP_006229626	(Get FASTA)	NCBI Sequence Viewer
	XP_006229627	(Get FASTA)	NCBI Sequence Viewer
	XP_038955460	(Get FASTA)	NCBI Sequence Viewer
	XP_038955461	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85014	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072313.2
	ENSRNOP00000082756.1
	ENSRNOP00000088024.1
	ENSRNOP00000093710.1

RefSeq Acc Id:	NP_001129308 ⟸ NM_001135836
- Peptide Label:	isoform 2
- UniProtKB:	A6KRU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCNMCVVQKPEEQYKVMLQVNGKELSKLSQEQTLEALRASKEPLVIQVLRRSPRLRGDSSCHD LQLVDSGTQTDITFEHIMALGKLRPPTPPMGILEPPPISHEYYDPAEFMEGGPQEAERMDELEY EEVELCKNSHQDKLGLMVCYRTDDEEDLGIYVGEVNPNSIAAKDGRIREGDRIIQINGMDVQNR EEAVAILSQEENTNISLLVARPESQLAKRWKDSDRDDFLDDFGSENEGDLRTRKLKSPPVQQTG NDEKGAPDGGPGLSNSQDLDSGVGRTDESTRNEESSEHDLLGDEPPSTTNTPGSLRKFGLQGDA LQSRDFHFSMDSLLAEGAGLGGADLPGLTDEEYERYRELLEIKCHLENGNQLGILFSRASSGNS ALDVNRNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAASEPK KHELSDISELPEKSDKDSTSAYNTGESCRSTPLLVEPLPESPLKRSAAGNSNLNRTPSGPPVTT HLKAAPSPGSPAKFRSLSRDPEVGRRQHTEERVRRSTKTSVTLERVGPEGSPYLSRRHRGQEIE QYHSCVQLAPPRTLEDLSHGSLSLASGSRVGGVVAAAVEAPRMEWKVKVRSDGTRYVAKRPVRD RLLKARALKIREERSGMTTDDDAVSEMKMGRYWSKEERKQHLIRAREQRKRREFMMQSRLECLR EQQNGDSKPELNIIALSHRKTMKKRNKKILDNWITIQEMLAHGARSADGKRIYNPLLSVTTV hide sequence

RefSeq Acc Id:	XP_006229626 ⟸ XM_006229564
- Peptide Label:	isoform X1
- UniProtKB:	A6KRU8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCNMCVVQKPEEQYKVMLQVNGKELSKLSQEQTLEALRASKEPLVIQVLRRSPRLRGDSSCHD LQLVDSGTQTDITFEHIMALGKLRPPTPPMGILEPYVLSELPPISHEYYDPAEFMEGGPQEAER MDELEYEEVELCKNSHQDKLGLMVCYRTDDEEDLGIYVGEINGMDVQNREEAVAILSQEENTNI SLLVARPESQLAKRWKDSDRDDFLDDFGSENEGDLRTRKLKSPPVQQTGNDEKGAPDGGPGLSN SQDLDSGVGRTDESTRNEESSEHDLLGDEPPSTTNTPGSLRKFGLQGDALQSRDFHFSMDSLLA EGAGLGGADLPGLTDEEYERYRELLEIKCHLENGNQLGILFSRASSGNSALDVNRNESLGHEMA MLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAASEPKKHELSDISELPEKSD KDSTSAYNTGESCRSTPLLVEPLPESPLKRSAAGNSNLNRTPSGPPVTTHLKAAPSPGSPAKFR SLSRDPEVGRRQHTEERVRRSTKTSVTLERVGPEGSPYLSRRHRGQEIEQYHSCVQLAPPRTLE DLSHGSLSLASGSRVGGVVAAAVEAPRMEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERS GMTTDDDAVSEMKMGRYWSKEERKQHLIRAREQRKRREFMMQSRLECLREQQNGDSKPELNIIA LSHRKTMKKRNKKILDNWITIQEMLAHGARSADGKRIYNPLLSVTTV hide sequence

RefSeq Acc Id:	XP_006229627 ⟸ XM_006229565
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AHV5 (UniProtKB/TrEMBL), A0A8I5ZXV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCNMCVVQKPEEQYKVMLQEVELCKNSHQDKLGLMVCYRTDDEEDLGIYVGEVNPNSIAAKDG RIREGDRIIQINGMDVQNREEAVAILSQEENTNISLLVARPESQLAKRWKDSDRDDFLDDFGSE NEGDLRTRKLKSPPVQQTGNDEKGAPDGGPGLSNSQDLDSGVGRTDESTRNEESSEHDLLGDEP PSTTNTPGSLRKFGLQGDALQSRDFHFSMDSLLAEGAGLGGADLPGLTDEEYERYRELLEIKCH LENGNQLGILFSRASSGNSALDVNRNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCM KAWLLEEESLYDLAASEPKKHELSDISELPEKSDKDSTSAYNTGESCRSTPLLVEPLPESPLKR SAAGNSNLNRTPSGPPVTTHLKAAPSPGSPAKFRSLSRDPEVGRRQHTEERVRRSTKTSVTLER VGPEGSPYLSRRHRGQEIEQYHSCVQLAPPRTLEDLSHGSLSLASGSRVGGVVAAAVEAPRMEW KVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKMGRYWSKEERKQHLIRA REQRKRREFMMQSRLECLREQQNGDSKPELNIIALSHRKTMKKRNKKILDNWITIQEMLAHGAR SADGKRIYNPLLSVTTV hide sequence

Ensembl Acc Id:

ENSRNOP00000072313 ⟸ ENSRNOT00000077109

RefSeq Acc Id:	XP_038955460 ⟸ XM_039099532
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AJE7 (UniProtKB/TrEMBL), A0A8I5ZXV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955461 ⟸ XM_039099533
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000093710 ⟸ ENSRNOT00000115095

Ensembl Acc Id:

ENSRNOP00000088024 ⟸ ENSRNOT00000108114

Ensembl Acc Id:

ENSRNOP00000082756 ⟸ ENSRNOT00000100363

RefSeq Acc Id:	NP_001401653 ⟸ NM_001414724
- Peptide Label:	isoform 1
- UniProtKB:	A6KRU8 (UniProtKB/TrEMBL), D3ZLI9 (UniProtKB/TrEMBL)

Protein Domains

PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZLI9-F1-model_v2	AlphaFold	D3ZLI9	1-766	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561214	AgrOrtholog
BioCyc Gene	G2FUF-659	BioCyc
Ensembl Genes	ENSRNOG00000056174	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077109.2	UniProtKB/TrEMBL
	ENSRNOT00000100363.1	UniProtKB/TrEMBL
	ENSRNOT00000108114.1	UniProtKB/TrEMBL
	ENSRNOT00000115095.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
InterPro	E3_ubiquitin-PDZ_ligase	UniProtKB/TrEMBL
	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
NCBI Gene	293856	ENTREZGENE
PANTHER	PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4	UniProtKB/TrEMBL
	PDZ DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PhenoGen	Pdzd4	PhenoGen
PROSITE	PDZ	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000056174	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
UniProt	A0A8I5ZXV3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AHV5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJE7	ENTREZGENE, UniProtKB/TrEMBL
	A6KRU8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZLI9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Pdzd4	PDZ domain containing 4	Pdzd4_predicted	PDZ domain containing 4 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Pdzd4_predicted	PDZ domain containing 4 (predicted)	RGD1561214_predicted	similar to PDZ domain containing 4 (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1561214_predicted	similar to PDZ domain containing 4 (predicted)	LOC293856	similar to PDZ domain containing 4	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC293856	similar to PDZ domain containing 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar