Cep63 (centrosomal protein 63) - Rat Genome Database

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Gene: Cep63 (centrosomal protein 63) Rattus norvegicus
Analyze
Symbol: Cep63
Name: centrosomal protein 63
RGD ID: 1561183
Description: Predicted to be involved in DNA damage checkpoint signaling and non-membrane-bounded organelle assembly. Predicted to act upstream of or within several processes, including centrosome duplication; meiosis I; and negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to be located in centrosome and spindle pole. Predicted to be active in centriole. Human ortholog(s) of this gene implicated in Seckel syndrome 6. Orthologous to human CEP63 (centrosomal protein 63); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; doxorubicin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 63kDa; centrosomal protein of 63 kDa; LOC300963; MGC114577; similar to centrosome protein Cep63
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28103,162,639 - 103,214,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,162,700 - 103,214,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8108,826,036 - 108,877,504 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08107,025,199 - 107,076,667 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08104,867,878 - 104,919,347 (-)NCBIRnor_WKY
Rnor_6.08111,063,988 - 111,116,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,064,049 - 111,116,014 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,462,226 - 110,513,824 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48107,548,503 - 107,600,193 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8102,544,372 - 102,595,647 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14654843   PMID:21399614   PMID:24240477   PMID:26158450   PMID:26297806  


Genomics

Comparative Map Data
Cep63
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28103,162,639 - 103,214,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,162,700 - 103,214,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8108,826,036 - 108,877,504 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08107,025,199 - 107,076,667 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08104,867,878 - 104,919,347 (-)NCBIRnor_WKY
Rnor_6.08111,063,988 - 111,116,014 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8111,064,049 - 111,116,014 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08110,462,226 - 110,513,824 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48107,548,503 - 107,600,193 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8102,544,372 - 102,595,647 (-)NCBICelera
Cytogenetic Map8q32NCBI
CEP63
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383134,485,724 - 134,782,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3134,485,699 - 134,587,789 (+)EnsemblGRCh38hg38GRCh38
GRCh373134,204,566 - 134,293,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,687,265 - 135,776,545 (+)NCBINCBI36Build 36hg18NCBI36
Celera3132,630,858 - 132,719,766 (+)NCBICelera
Cytogenetic Map3q22.2NCBI
HuRef3131,582,219 - 131,671,534 (+)NCBIHuRef
CHM1_13134,168,929 - 134,258,192 (+)NCBICHM1_1
T2T-CHM13v2.03137,230,895 - 137,320,267 (+)NCBIT2T-CHM13v2.0
Cep63
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,463,777 - 102,503,767 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,461,787 - 102,503,733 (-)EnsemblGRCm39 Ensembl
GRCm389102,586,578 - 102,626,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,584,588 - 102,626,534 (-)EnsemblGRCm38mm10GRCm38
MGSCv379102,488,908 - 102,528,454 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369102,442,841 - 102,483,374 (-)NCBIMGSCv36mm8
Celera9102,127,465 - 102,167,080 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.61NCBI
Cep63
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555014,032,223 - 4,095,970 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555014,032,281 - 4,095,990 (-)NCBIChiLan1.0ChiLan1.0
CEP63
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13139,003,890 - 139,115,026 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3139,003,898 - 139,092,680 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03131,532,450 - 131,609,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CEP63
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12331,249,517 - 31,303,145 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2331,249,673 - 31,303,142 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2331,227,173 - 31,281,914 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02331,764,350 - 31,818,191 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,764,561 - 31,818,295 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12331,461,558 - 31,515,366 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02331,520,970 - 31,575,933 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,767,983 - 31,822,741 (+)NCBIUU_Cfam_GSD_1.0
Cep63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,816,931 - 70,871,801 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365297,585,839 - 7,635,439 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365297,577,122 - 7,632,161 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP63
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,605,675 - 75,707,102 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11375,605,622 - 75,707,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21383,132,475 - 83,234,187 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEP63
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11555,821,117 - 55,892,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1555,821,487 - 55,892,398 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604128,746,939 - 28,876,552 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep63
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,817,662 - 10,864,664 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473010,811,159 - 10,861,973 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep63
115 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:130
Interacting mature miRNAs:136
Transcripts:ENSRNOT00000031313, ENSRNOT00000056531
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat

Markers in Region
BF390936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,167,280 - 103,167,431 (+)MAPPERmRatBN7.2
Rnor_6.08111,068,630 - 111,068,780NCBIRnor6.0
Rnor_5.08110,466,863 - 110,467,013UniSTSRnor5.0
RGSC_v3.48107,553,088 - 107,553,238UniSTSRGSC3.4
Celera8102,548,961 - 102,549,111UniSTS
RH 3.4 Map81154.4UniSTS
Cytogenetic Map8q32UniSTS
AI012039  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,162,846 - 103,162,961 (+)MAPPERmRatBN7.2
Rnor_6.08111,064,196 - 111,064,310NCBIRnor6.0
Rnor_5.08110,462,429 - 110,462,543UniSTSRnor5.0
RGSC_v3.48107,548,654 - 107,548,768UniSTSRGSC3.4
Celera8102,544,527 - 102,544,641UniSTS
RH 3.4 Map81168.8UniSTS
Cytogenetic Map8q32UniSTS
D9Mgc48e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,171,580 - 103,171,661 (+)MAPPERmRatBN7.2
Rnor_6.08111,072,930 - 111,073,010NCBIRnor6.0
Rnor_5.08110,471,163 - 110,471,243UniSTSRnor5.0
RGSC_v3.48107,557,388 - 107,557,468UniSTSRGSC3.4
Celera8102,553,261 - 102,553,341UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 31 16 19 16 1 1 67 35 41 11 1
Low 13 26 25 25 7 10 7 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001037772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001244805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_045200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC161815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000031313   ⟹   ENSRNOP00000029550
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,162,741 - 103,205,428 (-)Ensembl
Rnor_6.0 Ensembl8111,064,050 - 111,107,599 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000056531   ⟹   ENSRNOP00000053371
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,162,700 - 103,214,177 (-)Ensembl
Rnor_6.0 Ensembl8111,064,049 - 111,116,014 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084413   ⟹   ENSRNOP00000070249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,162,700 - 103,205,428 (-)Ensembl
Rnor_6.0 Ensembl8111,064,116 - 111,101,416 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099786   ⟹   ENSRNOP00000083027
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,162,797 - 103,205,428 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114079   ⟹   ENSRNOP00000092635
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8103,169,629 - 103,205,796 (-)Ensembl
RefSeq Acc Id: NM_001037772   ⟹   NP_001032861
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,696 - 103,214,177 (-)NCBI
Rnor_6.08111,064,045 - 111,116,014 (-)NCBI
Rnor_5.08110,462,226 - 110,513,824 (-)NCBI
RGSC_v3.48107,548,503 - 107,600,193 (-)RGD
Celera8102,544,376 - 102,595,647 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001244805   ⟹   NP_001231734
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,701 - 103,205,761 (-)NCBI
Rnor_6.08111,064,050 - 111,107,599 (-)NCBI
Rnor_5.08110,462,226 - 110,513,824 (-)NCBI
Celera8102,544,381 - 102,587,232 (-)NCBI
Sequence:
RefSeq Acc Id: NR_045200
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,692 - 103,205,337 (-)NCBI
Rnor_6.08111,064,041 - 111,107,175 (-)NCBI
Rnor_5.08110,462,226 - 110,513,824 (-)NCBI
Celera8102,544,372 - 102,586,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017595591   ⟹   XP_017451080
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,647 - 103,205,569 (-)NCBI
Rnor_6.08111,063,996 - 111,080,517 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081191   ⟹   XP_038937119
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,639 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_039081192   ⟹   XP_038937120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,966 - 103,205,376 (-)NCBI
RefSeq Acc Id: XM_039081193   ⟹   XP_038937121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,966 - 103,205,627 (-)NCBI
RefSeq Acc Id: XM_039081194   ⟹   XP_038937122
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,966 - 103,205,377 (-)NCBI
RefSeq Acc Id: XM_039081195   ⟹   XP_038937123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,966 - 103,205,625 (-)NCBI
RefSeq Acc Id: XM_039081196   ⟹   XP_038937124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,966 - 103,205,377 (-)NCBI
RefSeq Acc Id: XM_039081197   ⟹   XP_038937125
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,647 - 103,205,379 (-)NCBI
RefSeq Acc Id: XM_039081198   ⟹   XP_038937126
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,639 - 103,201,508 (-)NCBI
RefSeq Acc Id: XM_039081199   ⟹   XP_038937127
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,639 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_039081200   ⟹   XP_038937128
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,166,008 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_039081201   ⟹   XP_038937129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,639 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_039081202   ⟹   XP_038937130
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,164,907 - 103,205,371 (-)NCBI
RefSeq Acc Id: XM_039081203   ⟹   XP_038937131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,639 - 103,178,734 (-)NCBI
RefSeq Acc Id: XR_005487790
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28103,162,647 - 103,205,371 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001032861   ⟸   NM_001037772
- Peptide Label: isoform 1 precursor
- UniProtKB: Q4KLY0 (UniProtKB/Swiss-Prot),   A0A096MIU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231734   ⟸   NM_001244805
- Peptide Label: isoform 2
- UniProtKB: Q4KLY0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017451080   ⟸   XM_017595591
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000029550   ⟸   ENSRNOT00000031313
RefSeq Acc Id: ENSRNOP00000070249   ⟸   ENSRNOT00000084413
RefSeq Acc Id: ENSRNOP00000053371   ⟸   ENSRNOT00000056531
RefSeq Acc Id: XP_038937129   ⟸   XM_039081201
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038937127   ⟸   XM_039081199
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937119   ⟸   XM_039081191
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937126   ⟸   XM_039081198
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038937131   ⟸   XM_039081203
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038937125   ⟸   XM_039081197
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038937121   ⟸   XM_039081193
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937123   ⟸   XM_039081195
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937124   ⟸   XM_039081196
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937122   ⟸   XM_039081194
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038937120   ⟸   XM_039081192
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937130   ⟸   XM_039081202
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZV14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937128   ⟸   XM_039081200
- Peptide Label: isoform X7
RefSeq Acc Id: ENSRNOP00000092635   ⟸   ENSRNOT00000114079
RefSeq Acc Id: ENSRNOP00000083027   ⟸   ENSRNOT00000099786
Protein Domains
CEP63

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLY0-F1-model_v2 AlphaFold Q4KLY0 1-538 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696225
Promoter ID:EPDNEW_R6749
Type:multiple initiation site
Name:Cep63_1
Description:centrosomal protein 63
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08111,107,611 - 111,107,671EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561183 AgrOrtholog
BioCyc Gene G2FUF-29349 BioCyc
Ensembl Genes ENSRNOG00000008410 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029550 ENTREZGENE
  ENSRNOP00000029550.6 UniProtKB/TrEMBL
  ENSRNOP00000053371 ENTREZGENE
  ENSRNOP00000053371.3 UniProtKB/TrEMBL
  ENSRNOP00000070249 ENTREZGENE
  ENSRNOP00000070249.2 UniProtKB/TrEMBL
  ENSRNOP00000083027 ENTREZGENE
  ENSRNOP00000083027.1 UniProtKB/TrEMBL
  ENSRNOP00000092635 ENTREZGENE
  ENSRNOP00000092635.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031313 ENTREZGENE
  ENSRNOT00000031313.7 UniProtKB/TrEMBL
  ENSRNOT00000056531 ENTREZGENE
  ENSRNOT00000056531.5 UniProtKB/TrEMBL
  ENSRNOT00000084413 ENTREZGENE
  ENSRNOT00000084413.2 UniProtKB/TrEMBL
  ENSRNOT00000099786 ENTREZGENE
  ENSRNOT00000099786.1 UniProtKB/TrEMBL
  ENSRNOT00000114079 ENTREZGENE
  ENSRNOT00000114079.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134549 IMAGE-MGC_LOAD
  IMAGE:9031816 IMAGE-MGC_LOAD
InterPro Cep63 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cep63/Deup1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:300963 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187263 IMAGE-MGC_LOAD
  MGC:94440 IMAGE-MGC_LOAD
NCBI Gene 300963 ENTREZGENE
PANTHER PTHR18875:SF7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CEP63 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cep63 PhenoGen
UniProt A0A096MIU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JXF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV14 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVX5_RAT UniProtKB/TrEMBL
  A0A8L2UKK7_RAT UniProtKB/TrEMBL
  CEP63_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Cep63  centrosomal protein 63kDa  LOC300963  similar to centrosome protein Cep63  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Cep63  centrosomal protein 63  Cep63  centrosomal protein 63kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC300963  similar to centrosome protein Cep63      Symbol and Name status set to provisional 70820 PROVISIONAL