Cep63 (centrosomal protein 63) - Rat Genome Database

Name: Cep63
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cep63 (centrosomal protein 63) Rattus norvegicus

Analyze

Symbol:

Cep63

Name:

centrosomal protein 63

RGD ID:

1561183

Description:

Predicted to be involved in DNA damage checkpoint signaling and non-membrane-bounded organelle assembly. Predicted to act upstream of or within several processes, including centrosome duplication; meiosis I; and negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to be located in centrosome and spindle pole. Predicted to be active in centriole. Human ortholog(s) of this gene implicated in Seckel syndrome 6. Orthologous to human CEP63 (centrosomal protein 63); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; doxorubicin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

centrosomal protein 63kDa; centrosomal protein of 63 kDa; LOC300963; MGC114577; similar to centrosome protein Cep63

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CEP63 (centrosomal protein 63)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cep63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cep63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CEP63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CEP63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cep63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CEP63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CEP63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cep63 (centrosomal protein 63)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RB1CC1 (RB1 inducible coiled-coil 1)	HGNC	PhylomeDB
Homo sapiens (human):	CGN (cingulin)	HGNC	PhylomeDB
Alliance orthologs ³
Homo sapiens (human):	CEP63 (centrosomal protein 63)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cep63 (centrosomal protein 63)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cep63 (centrosomal protein 63)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	103,162,639 - 103,214,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	103,162,700 - 103,214,177 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	108,826,036 - 108,877,504 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	107,025,199 - 107,076,667 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	104,867,878 - 104,919,347 (-)	NCBI	Rnor_WKY
Rnor_6.0	8	111,063,988 - 111,116,014 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	111,064,049 - 111,116,014 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	110,462,226 - 110,513,824 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	107,548,503 - 107,600,193 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	102,544,372 - 102,595,647 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hereditary spastic paraplegia (ISO)

microcephaly (ISO)

myofibrillar myopathy 7 (ISO)

Primary Lymphedema with Myelodysplasia (ISO)

Seckel syndrome (ISS)

Seckel syndrome 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

cerium trichloride (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chrysene (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (EXP,ISO)

epoxiconazole (ISO)

folic acid (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

paracetamol (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

theophylline (ISO)

titanium dioxide (ISO)

Triptolide (ISO)

tungsten (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

centriole replication (IBA,IEA,ISO,ISS)

centrosome duplication (ISO)

de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (IBA)

DNA damage checkpoint signaling (ISS)

intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

meiotic telomere clustering (ISO)

negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

protein localization to centrosome (ISO)

reciprocal meiotic recombination (ISO)

signal transduction in response to DNA damage (ISS)

spindle assembly (ISS)

Cellular Component

centriole (IBA,ISO,ISS)

centrosome (IEA,ISO,ISS)

cytoplasm (IEA)

microtubule organizing center (IEA)

spindle pole (ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:14654843	PMID:21399614	PMID:24240477	PMID:26158450	PMID:26297806

Genomics

Comparative Map Data

Cep63
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	103,162,639 - 103,214,177 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	103,162,700 - 103,214,177 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	108,826,036 - 108,877,504 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	107,025,199 - 107,076,667 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	104,867,878 - 104,919,347 (-)	NCBI	Rnor_WKY
Rnor_6.0	8	111,063,988 - 111,116,014 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	111,064,049 - 111,116,014 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	110,462,226 - 110,513,824 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	107,548,503 - 107,600,193 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	102,544,372 - 102,595,647 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

CEP63
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	134,485,724 - 134,782,559 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	134,485,699 - 134,587,789 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	134,204,566 - 134,293,855 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	135,687,265 - 135,776,545 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	132,630,858 - 132,719,766 (+)	NCBI		Celera
Cytogenetic Map	3	q22.2	NCBI
HuRef	3	131,582,219 - 131,671,534 (+)	NCBI		HuRef
CHM1_1	3	134,168,929 - 134,258,192 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	137,230,895 - 137,320,267 (+)	NCBI		T2T-CHM13v2.0

Cep63
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	102,463,777 - 102,503,767 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	102,461,787 - 102,503,733 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	102,586,578 - 102,626,564 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	102,584,588 - 102,626,534 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	102,488,908 - 102,528,454 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	102,442,841 - 102,483,374 (-)	NCBI		MGSCv36	mm8
Celera	9	102,127,465 - 102,167,080 (-)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	54.61	NCBI

Cep63
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	4,032,223 - 4,095,970 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955501	4,032,281 - 4,095,990 (-)	NCBI	ChiLan1.0	ChiLan1.0

CEP63
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	139,003,890 - 139,115,026 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	139,003,898 - 139,092,680 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	131,532,450 - 131,609,240 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CEP63
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	31,249,517 - 31,303,145 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	31,249,673 - 31,303,142 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	31,227,173 - 31,281,914 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	31,764,350 - 31,818,191 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	31,764,561 - 31,818,295 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	31,461,558 - 31,515,366 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	31,520,970 - 31,575,933 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	31,767,983 - 31,822,741 (+)	NCBI		UU_Cfam_GSD_1.0

Cep63
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	70,816,931 - 70,871,801 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	7,585,839 - 7,635,439 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936529	7,577,122 - 7,632,161 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CEP63
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	75,605,675 - 75,707,102 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	75,605,622 - 75,707,087 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	83,132,475 - 83,234,187 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CEP63
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	55,821,117 - 55,892,951 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	55,821,487 - 55,892,398 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	28,746,939 - 28,876,552 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cep63
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	10,817,662 - 10,864,664 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	10,811,159 - 10,861,973 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cep63
115 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	192
Count of miRNA genes:	130
Interacting mature miRNAs:	136
Transcripts:	ENSRNOT00000031313, ENSRNOT00000056531
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	102370617	108923645	Rat

Markers in Region

BF390936

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	103,167,280 - 103,167,431 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,068,630 - 111,068,780	NCBI	Rnor6.0
Rnor_5.0	8	110,466,863 - 110,467,013	UniSTS	Rnor5.0
RGSC_v3.4	8	107,553,088 - 107,553,238	UniSTS	RGSC3.4
Celera	8	102,548,961 - 102,549,111	UniSTS
RH 3.4 Map	8	1154.4	UniSTS
Cytogenetic Map	8	q32	UniSTS

AI012039

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	103,162,846 - 103,162,961 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,064,196 - 111,064,310	NCBI	Rnor6.0
Rnor_5.0	8	110,462,429 - 110,462,543	UniSTS	Rnor5.0
RGSC_v3.4	8	107,548,654 - 107,548,768	UniSTS	RGSC3.4
Celera	8	102,544,527 - 102,544,641	UniSTS
RH 3.4 Map	8	1168.8	UniSTS
Cytogenetic Map	8	q32	UniSTS

D9Mgc48e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	103,171,580 - 103,171,661 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	111,072,930 - 111,073,010	NCBI	Rnor6.0
Rnor_5.0	8	110,471,163 - 110,471,243	UniSTS	Rnor5.0
RGSC_v3.4	8	107,557,388 - 107,557,468	UniSTS	RGSC3.4
Celera	8	102,553,261 - 102,553,341	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	30	31	16	19	16	1	1	67	35	41	11	1
Low		13	26	25		25	7	10	7				7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001244805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_045200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC161815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000031313 ⟹ ENSRNOP00000029550

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	103,162,741 - 103,205,428 (-)	Ensembl
Rnor_6.0 Ensembl	8	111,064,050 - 111,107,599 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000056531 ⟹ ENSRNOP00000053371

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	103,162,700 - 103,214,177 (-)	Ensembl
Rnor_6.0 Ensembl	8	111,064,049 - 111,116,014 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084413 ⟹ ENSRNOP00000070249

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	103,162,700 - 103,205,428 (-)	Ensembl
Rnor_6.0 Ensembl	8	111,064,116 - 111,101,416 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099786 ⟹ ENSRNOP00000083027

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	103,162,797 - 103,205,428 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114079 ⟹ ENSRNOP00000092635

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	103,169,629 - 103,205,796 (-)	Ensembl

RefSeq Acc Id:

NM_001037772 ⟹ NP_001032861

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,696 - 103,214,177 (-)	NCBI
Rnor_6.0	8	111,064,045 - 111,116,014 (-)	NCBI
Rnor_5.0	8	110,462,226 - 110,513,824 (-)	NCBI
RGSC_v3.4	8	107,548,503 - 107,600,193 (-)	RGD
Celera	8	102,544,376 - 102,595,647 (-)	NCBI

Sequence:

show sequence

GAACACCTCCCAGGCATGGGAGTACGAGTCTGTGGTTCTCTTCATGTCTGGTTTCTTCTGTCTT
TCCTGCTTGTATTTTCAACAACCTGTGCTGAAGGACACACTTGCCAAAACAAAGGGGATTTGGC
GATGGAGGCCTTGTTGGAAGGAATACAAACTCGGGGGCATAGTGGGGGATTTTTGACATCCTGT
GAAGCAGAATTGCAAGAGCTCATGAAACAGATCGATATAATGGTGGCTCATAAGAAATCTGAGT
GGGAGGGGCAGACACATGCTCTGGAGACTTGTTTGGACATGCGCGATCGGGAGCTGAAGGCTCT
GAGGAGTCAGCTGGACATGAAGCACAAAGAGGTTGGAATATTGCATCAGCAGATAGAAGAACAA
GAAAAAACCAAGCAAGAAATGGCCCTGGAGTACAAGGAGGAGTTAATGAAGCTGCAGGAGGAAT
TAAGCAGACTGAAGAGAAGCTATGAAAAACTGCAGAAAAAGCAACTAAGAGAATTTAGAGGAAA
TACCAAAAGTCTGCGAGAGGATCGGTCTGAGATTGAGAGGCTGACTGGAAAAATAGAGGAATTC
CGACAGAAGTCTTTGGACTGGGAGAAGCAGCGTCTGATTTATCAGCAACAGGTATCTTCTCTGG
AAGCACAGAGGAAGGCTCTAGCTGAGCAGTCAGAGATAATCCAGGCTCAGCTTGCCAACCGGAA
ACAGAAATTAGAGTCTGTGGAACTGTCTAGCCAGTCAGAAATTCAGCACCTGAGCAGTAAGCTT
GAGCGGGCTAAGGACACCATCTGTGCCAATGAGCTGGAAATAGAGCGCCTTAATATAAGGGTCA
AGGACCTGATGGGAACCAACGTGACTATCCTGCAGGAGCAGCGGCAAAAGGAGGAGAAACTGAG
GGAGTCTGAAAAGTTACTAGAGGCTCTGCAGGAAGAACAGAAAGAGTTGAAGGCAAGTCTTCAA
GCTCAAGAAAGCTTCATTCTTGATGCAAAAATGCAGGAGAAACTGCAAACGAAACTAAAGGCAG
TTGACACTAAGCACTCAGTAGAAAGGTCTCTGGAGGACTGTCAGGTGGAGAGGAAGTACAGCTC
TTCAGGGCAGGGAGTCTTGGATAATGTGCTCTCCCAGTTGGACATAAGCCACAGCAGTGAAGAA
CTCCTACAGGCAGAGGTGACTCGTCTTGAAGGCAGTTTGGAATCTGTGAGTACAACATGTAAAC
AGCTGAGCCAAGAACTGATGGAGAAGTACGAAGAGCTGAAGAGGATGGAAGGGCATAACAATGA
GTACCGGACAGAGATAAAGAAGCTGAAGGAACAGATTCTGCAGGCTGATCAGACTTACAGCTCT
GCCCTGGAAGGAATGAAGACGGAAATCTCCCAGCTAACCCGGGAGTTGCACCAGCGAGATATCA
CTATTGCTTCTGCCAAGTGTTCCTCCTCAGACATGGAAAGGCAGCTGAAGGCAGAGATGCAGAA
GGCGGAAGAAAAGGCCGTAGAGCATAAGGAGATTCTGAGTCAGCTGGAATCTCTCAGATTAGAA
AATCGCCGTCTCTCTGAAACAGTGATGAAGCTGGAACTGGGCTTGCACGAGTGCTCGATGCCCG
TCTCTCCACTGGGATTGATAGCTACCAGGTTTCTAGAAGAGGAGGAGCTGAGGTCTCACCACAT
TCTAGAGCGCCTGGACGCCCACATTGAAGAACTGAAAAGAGAGAGTGAGAAGACGGTGAGGCAG
TTCACAGCCCTCGTGTAGTGCTGAGCAGCCACACACAGAAGACTGGTTCTAAAGATCTAAGAGC
AATGGCTGCAAGAGCAGCACTGAGGAATCTGCAGATCGGGCACTTAGGTATTTTCACTGGCTCA
TTTGAAGGACTGCTTCCAGTAGTAACCTGTGAGAATAAACTACCTTGCAGACTTTCTCACATGA
ATATTTATTACCACAGAGCAATACCTTTTCTTCCTGACTTACATGTGAATAGCTGTGTACTAAT
TAAAATAAAGATTTTGCTATACTGTTTGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001244805 ⟹ NP_001231734

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,701 - 103,205,761 (-)	NCBI
Rnor_6.0	8	111,064,050 - 111,107,599 (-)	NCBI
Rnor_5.0	8	110,462,226 - 110,513,824 (-)	NCBI
Celera	8	102,544,381 - 102,587,232 (-)	NCBI

Sequence:

show sequence

GCAAGGGGGAGGTCGAGCGTCGCCATGGGTGCTCCGTTCCACTCCGCACAGCGTGCAGTAAAGA
AGTGGCTCTGAAGGTCGGTTGAGAGTACCGGCCTGCGCTTCTGGAAGCGCTGAACGACTCTGAA
GTCGAGGGCGAACGCTTGGCTACTCTCAGAAACCCGGGCGGCGGGCGCGAAAAACCCTTACCCA
CAGAGCGCGCGTCGGCTTCCTCCGGGCCCCGCCCTTCTTCCGGGTCACGTGACGCACGGCGCTC
TCATACCCCGTATGTAGTTGCCAAAACAAAGGGGATTTGGCGATGGAGGCCTTGTTGGAAGGAA
TACAAACTCGGGGGCATAGTGGGGGATTTTTGACATCCTGTGAAGCAGAATTGCAAGAGCTCAT
GAAACAGATCGATATAATGGTGGCTCATAAGAAATCTGAGTGGGAGGGGCAGACACATGCTCTG
GAGACTTGTTTGGACATGCGCGATCGGGAGCTGAAGGCTCTGAGGAGTCAGCTGGACATGAAGC
ACAAAGAGGTTGGAATATTGCATCAGCAGATAGAAGAACAAGAAAAAACCAAGCAAGAAATGGC
CCTGGAGTACAAGGAGGAGTTAATGAAGCTGCAGGAGGAATTAAGCAGACTGAAGAGAAGCTAT
GAAAAACTGCAGAAAAAGCAACTAAGAGAATTTAGAGGAAATACCAAAAGTCTGCGAGAGGATC
GGTCTGAGATTGAGAGGCTGACTGGAAAAATAGAGGAATTCCGACAGAAGTCTTTGGACTGGGA
GAAGCAGCGTCTGATTTATCAGCAACAGGTATCTTCTCTGGAAGCACAGAGGAAGGCTCTAGCT
GAGCAGTCAGAGATAATCCAGGCTCAGCTTGCCAACCGGAAACAGAAATTAGAGTCTGTGGAAC
TGTCTAGCCAGTCAGAAATTCAGCACCTGAGCAGTAAGCTTGAGCGGGCTAAGGACACCATCTG
TGCCAATGAGCTGGAAATAGAGCGCCTTAATATAAGGGTCAAGGACCTGATGGGAACCAACGTG
ACTATCCTGCAGGAGCAGCGGCAAAAGGAGGAGAAACTGAGGGAGTCTGAAAAGTTACTAGAGG
CTCTGCAGGAAGAACAGAAAGAGTTGAAGGCAAGTCTTCAAGCTCAAGAAAGCTTCATTCTTGA
TGCAAAAATGCAGGAGAAACTGCAAACGAAACTAAAGGCAGTTGACACTAAGCACTCAGTAGAA
AGGTCTCTGGAGGACTGTCAGGTGGAGAGGAAGTACAGCTCTTCAGGGCAGGGAGTCTTGGATA
ATGTGCTCTCCCAGTTGGACATAAGCCACAGCAGTGAAGAACTCCTACAGGCAGAGGTGACTCG
TCTTGAAGGCAGTTTGGAATCTGTGAGTACAACATGTAAACAGCTGAGCCAAGAACTGATGGAG
AAGTACGAAGAGCTGAAGAGGATGGAAGGGCATAACAATGAGTACCGGACAGAGATAAAGAAGC
TGAAGGAACAGATTCTGCAGGCTGATCAGACTTACAGCTCTGCCCTGGAAGGAATGAAGACGGA
AATCTCCCAGCTAACCCGGGAGTTGCACCAGCGAGATATCACTATTGCTTCTGCCAAGTGTTCC
TCCTCAGACATGGAAAGGCAGCTGAAGGCAGAGATGCAGAAGGCGGAAGAAAAGGCCGTAGAGC
ATAAGGAGATTCTGAGTCAGCTGGAATCTCTCAGATTAGAAAATCGCCGTCTCTCTGAAACAGT
GATGAAGCTGGAACTGGGCTTGCACGAGTGCTCGATGCCCGTCTCTCCACTGGGATTGATAGCT
ACCAGGTTTCTAGAAGAGGAGGAGCTGAGGTCTCACCACATTCTAGAGCGCCTGGACGCCCACA
TTGAAGAACTGAAAAGAGAGAGTGAGAAGACGGTGAGGCAGTTCACAGCCCTCGTGTAGTGCTG
AGCAGCCACACACAGAAGACTGGTTCTAAAGATCTAAGAGCAATGGCTGCAAGAGCAGCACTGA
GGAATCTGCAGATCGGGCACTTAGGTATTTTCACTGGCTCATTTGAAGGACTGCTTCCAGTAGT
AACCTGTGAGAATAAACTACCTTGCAGACTTTCTCACATGAATATTTATTACCACAGAGCAATA
CCTTTTCTTCCTGACTTACATGTGAATAGCTGTGTACTAATTAAAATAAAGATTTTGCTATACT
GTTTAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_045200

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,692 - 103,205,337 (-)	NCBI
Rnor_6.0	8	111,064,041 - 111,107,175 (-)	NCBI
Rnor_5.0	8	110,462,226 - 110,513,824 (-)	NCBI
Celera	8	102,544,372 - 102,586,808 (-)	NCBI

Sequence:

show sequence

GCTGCGGCTTGTTGTGCGTTTGCGGCCCTGGCCACCGTGGTGCCGCTAACCTTCTGGCCGCATG
GCCCGGGGCCGCAGTTCGTTGCGGCCCACCTACCGCGGGGGCCTCCACTGCACGCCCACTGCTG
TCCGGCCGCTGCGTCCCTGGGTTCCTCCGTCTCCTCCCTATGGGGCTCTGAGCTGACCGGCCAG
ACTACAGCAATGAATTGGTGGCCTAGCAACCTCCAAAGATGGAAAAACCGAAGTTCGACGACAC
AAAGCTGTTGCCAAAACAAAGGGGATTTGGCGATGGAGGCCTTGTTGGAAGGAATACAAACTCG
GGGGCATAGTGGGGGATTTTTGACATCCTGTGAAGCAGAATTGCAAGAGCTCATGAAACAGATC
GATATAATGGTGGCTCATAAGAAATCTGAGTGGGAGGGGCAGACACATGCTCTGGAGACTTGTT
TGGACATGCGCGATCGGGAGCTGAAGGCTCTGAGGAGTCAGCTGGACATGAAGCACAAAGAGGT
TGGAATATTGCATCAGCAGATAGAAGAACAAGAAAAAACCAAGCAAGAAATGGCCCTGGAGTAC
AAGGAGGAGTTAATGAAGCTGCAGGAGGAATTAAGCAGACTGAAGAGAAGCTATGAAAAACTGC
AGAAAAAGCAACTAAGAGAATTTAGAGGAAATACCAAAAGTCTGCGAGAGGATCGGTCTGAGAT
TGAGAGGCTGACTGGAAAAATAGAGGAATTCCGACAGAAGTCTTTGGACTGGGAGAAGCAGCGT
CTGATTTATCAGCAACAGGTATCTTCTCTGGAAGCACAGAGGAAGGCTCTAGCTGAGCAGTCAG
AGATAATCCAGGGATCTGGTGGAAAACAAACTGCTTCCACCCTGAGGCCTTGAGCTTGAATTTA
CATAAAATTATTTGTCTGTGTCTTTGCCTCTCCCTTTTCAGGCTCAGCTTGCCAACCGGAAACA
GAAATTAGAGTCTGTGGAACTGTCTAGCCAGTCAGAAATTCAGCACCTGAGCAGTAAGCTTGAG
CGGGCTAAGGACACCATCTGTGCCAATGAGCTGGAAATAGAGCGCCTTAATATAAGGGTCAAGG
ACCTGATGGGAACCAACGTGACTATCCTGCAGGAGCAGCGGCAAAAGGAGGAGAAACTGAGGGA
GTCTGAAAAGTTACTAGAGGCTCTGCAGGAAGAACAGAAAGAGTTGAAGGCAAGTCTTCAAGCT
CAAGAAAGCTTCATTCTTGATGCAAAAATGCAGGAGAAACTGCAAACGAAACTAAAGGCAGTTG
ACACTAAGCACTCAGTAGAAAGGTCTCTGGAGGACTGTCAGGTGGAGAGGAAGTACAGCTCTTC
AGGGCAGGGAGTCTTGGATAATGTGCTCTCCCAGTTGGACATAAGCCACAGCAGTGAAGAACTC
CTACAGGCAGAGGTGACTCGTCTTGAAGGCAGTTTGGAATCTGTGAGTACAACATGTAAACAGC
TGAGCCAAGAACTGATGGAGAAGTACGAAGAGCTGAAGAGGATGGAAGGGCATAACAATGAGTA
CCGGACAGAGATAAAGAAGCTGAAGGAACAGATTCTGCAGGCTGATCAGACTTACAGCTCTGCC
CTGGAAGGAATGAAGACGGAAATCTCCCAGCTAACCCGGGAGTTGCACCAGCGAGATATCACTA
TTGCTTCTGCCAAGTGTTCCTCCTCAGACATGGAAAGGCAGCTGAAGGCAGAGATGCAGAAGGC
GGAAGAAAAGGCCGTAGAGCATAAGGAGATTCTGAGTCAGCTGGAATCTCTCAGATTAGAAAAT
CGCCGTCTCTCTGAAACAGTGATGAAGCTGGAACTGGGCTTGCACGAGGCAAAAGAGATTTCAC
TAGCAGACCTTCAGGAGAATTATATTGAGGCATTAAATAAATTAGTGTCTGAAAATCAACAACT
ACAGAAAGATCTGATGAGCACCAAATCTCAGCTGGAGCATGCTACTCACATGTGCAAAAAAAAA
GATGGCAGGATCTTTAACCCAGCACACAGCAGAACAGTCGGGTTCAAGAATGCAGAACTTAAGC
CAACCCATGGCCAGCACAGACATGATGGAATAAAGACTGAGCAGTACAAAACAGGTCACCACTC
GCCTCGAGGACAAACGTTGGATAGCATAGACCCCGTGGCCAGGGGCCCCAGCCCCCTGAGTTGT
CACATCAGCCCCGGCAGCTCCACCATCTCTCTGCCTTCCAACTCTGTATGTCAGGCTCGCTCTT
TGCCTTCAATGCTAGATATAAATGATGCCAACTTTTCTGACAATCTGTCTGACTGTGCGAATGA
CCAAGAAGAGTTTGTATCTTCGTGCTCGATGCCCGTCTCTCCACTGGGATTGATAGCTACCAGG
TTTCTAGAAGAGGAGGAGCTGAGGTCTCACCACATTCTAGAGCGCCTGGACGCCCACATTGAAG
AACTGAAAAGAGAGAGTGAGAAGACGGTGAGGCAGTTCACAGCCCTCGTGTAGTGCTGAGCAGC
CACACACAGAAGACTGGTTCTAAAGATCTAAGAGCAATGGCTGCAAGAGCAGCACTGAGGAATC
TGCAGATCGGGCACTTAGGTATTTTCACTGGCTCATTTGAAGGACTGCTTCCAGTAGTAACCTG
TGAGAATAAACTACCTTGCAGACTTTCTCACATGAATATTTATTACCACAGAGCAATACCTTTT
CTTCCTGACTTACATGTGAATAGCTGTGTACTAATTAAAATAAAGATTTTGCTATACTGTTTGA
AAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017595591 ⟹ XP_017451080

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,647 - 103,205,569 (-)	NCBI
Rnor_6.0	8	111,063,996 - 111,080,517 (-)	NCBI

Sequence:

show sequence

TAAGAGAAGTTTAACTTTATAAATGATTTATGTCCATTTCTGATGTATAGATGAAAAACCAGTC
TAGATACTGAATTAAAACTTGAAAAAAACAGAATGTGAGAAGCCAAAAATACTTCGGCTGCCAT
GCAGAGCCAAAAGGTTAGGCACCGTACACCACAGGTTGTGAGACGGCTGCTGAAGAGGTCTTAT
TTGAGCAGAGTTCAGTAGGATAGGCCACTAAAAGGAAACGTCGAAACCTGCTGATAGCCAAGCC
TGCCTAGGAGTGACTCTTTTCTTTCCTCAGTGATTATAATTATTGATTATTCTTCTGTTATCTC
TCTTTTCCCTATTAATAATCTGTATGTTTTTAGGCTCAGCTTGCCAACCGGAAACAGAAATTAG
AGTCTGTGGAACTGTCTAGCCAGTCAGAAATTCAGCACCTGAGCAGTAAGCTTGAGCGGGCTAA
GGACACCATCTGTGCCAATGAGCTGGAAATAGAGCGCCTTAATATAAGGGTCAAGGACCTGATG
GGAACCAACGTGACTATCCTGCAGGAGCAGCGGCAAAAGGAGGAGAAACTGAGGGAGTCTGAAA
AGTTACTAGAGGCTCTGCAGGAAGAACAGAAAGAGTTGAAGGCAAGTCTTCAAGCTCAAGAAAG
CTTCATTCTTGATGCAAAAATGCAGGAGAAACTGCAAACGAAACTAAAGGCAGTTGACACTAAG
CACTCAGTAGAAAGGTCTCTGGAGGACTGTCAGGTGGAGAGGAAGTACAGCTCTTCAGGGCAGG
GAGTCTTGGATAATGTGCTCTCCCAGTTGGACATAAGCCACAGCAGTGAAGAACTCCTACAGGC
AGAGGTGACTCGTCTTGAAGGCAGTTTGGAATCTGTGAGTACAACATGTAAACAGCTGAGCCAA
GAACTGATGGAGAAGTACGAAGAGCTGAAGAGGATGGAAGGGCATAACAATGAGTACCGGACAG
AGATAAAGAAGCTGAAGGAACAGATTCTGCAGGCTGATCAGACTTACAGCTCTGCCCTGGAAGG
AATGAAGACGGAAATCTCCCAGCTAACCCGGGAGTTGCACCAGCGAGATATCACTATTGCTTCT
GCCAAGTGTTCCTCCTCAGACATGGAAAGGCAGCTGAAGGCAGAGATGCAGAAGGCGGAAGAAA
AGGCCGTAGAGCATAAGGAGATTCTGAGTCAGCTGGAATCTCTCAGATTAGAAAATCGCCGTCT
CTCTGAAACAGTGATGAAGCTGGAACTGGGCTTGCACGAGGCAAAAGAGATTTCACTAGCAGAC
CTTCAGGAGAATTATATTGAGGCATTAAATAAATTAGTGTCTGAAAATCAACAACTACAGAAAG
ATCTGATGAGCACCAAATCTCAGCTGGAGCATGCTACTCACATGTGCAAAAAAAAAGATGGCAG
GATCTTTAACCCAGCACACAGCAGAACAGTCGGGTTCAAGAATGCAGAACTTAAGCCAACCCAT
GGCCAGCACAGACATGATGGAATAAAGACTGAGCAGTACAAAACAGGTCACCACTCGCCTCGAG
GACAAACGTTGGATAGCATAGACCCCGTGGCCAGGGGCCCCAGCCCCCTGAGTTGTCACATCAG
CCCCGGCAGCTCCACCATCTCTCTGCCTTCCAACTCTGTATGTCAGGCTCGCTCTTTGCCTTCA
ATGCTAGATATAAATGATGCCAACTTTTCTGACAATCTGTCTGACTGTGCGAATGACCAAGAAG
AGTTTGTATCTTCGTGCTCGATGCCCGTCTCTCCACTGGGATTGATAGCTACCAGGTTTCTAGA
AGAGGAGGAGCTGAGGTCTCACCACATTCTAGAGCGCCTGGACGCCCACATTGAAGAACTGAAA
AGAGAGAGTGAGAAGACGGTGAGGCAGTTCACAGCCCTCGTGTAGTGCTGAGCAGCCACACACA
GAAGACTGGTTCTAAAGATCTAAGAGCAATGGCTGCAAGAGCAGCACTGAGGAATCTGCAGATC
GGGCACTTAGGTATTTTCACTGGCTCATTTGAAGGACTGCTTCCAGTAGTAACCTGTGAGAATA
AACTACCTTGCAGACTTTCTCACATGAATATTTATTACCACAGAGCAATACCTTTTCTTCCTGA
CTTACATGTGAATAGCTGTGTACTAATTAAAATAAAGATTTTGCTATACTGTTTGAAAATAAAG
TAACTACAGAGCTTCCCTTAAAGGAAGTATGTAGCGGAAGCATG

hide sequence

RefSeq Acc Id:

XM_039081191 ⟹ XP_038937119

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,639 - 103,205,371 (-)	NCBI

RefSeq Acc Id:

XM_039081192 ⟹ XP_038937120

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,966 - 103,205,376 (-)	NCBI

RefSeq Acc Id:

XM_039081193 ⟹ XP_038937121

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,966 - 103,205,627 (-)	NCBI

RefSeq Acc Id:

XM_039081194 ⟹ XP_038937122

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,966 - 103,205,377 (-)	NCBI

RefSeq Acc Id:

XM_039081195 ⟹ XP_038937123

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,966 - 103,205,625 (-)	NCBI

RefSeq Acc Id:

XM_039081196 ⟹ XP_038937124

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,966 - 103,205,377 (-)	NCBI

RefSeq Acc Id:

XM_039081197 ⟹ XP_038937125

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,647 - 103,205,379 (-)	NCBI

RefSeq Acc Id:

XM_039081198 ⟹ XP_038937126

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,639 - 103,201,508 (-)	NCBI

RefSeq Acc Id:

XM_039081199 ⟹ XP_038937127

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,639 - 103,205,371 (-)	NCBI

RefSeq Acc Id:

XM_039081200 ⟹ XP_038937128

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,166,008 - 103,205,371 (-)	NCBI

RefSeq Acc Id:

XM_039081201 ⟹ XP_038937129

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,639 - 103,205,371 (-)	NCBI

RefSeq Acc Id:

XM_039081202 ⟹ XP_038937130

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,164,907 - 103,205,371 (-)	NCBI

RefSeq Acc Id:

XM_039081203 ⟹ XP_038937131

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,639 - 103,178,734 (-)	NCBI

RefSeq Acc Id:

XR_005487790

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	103,162,647 - 103,205,371 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032861	(Get FASTA)	NCBI Sequence Viewer
	NP_001231734	(Get FASTA)	NCBI Sequence Viewer
	XP_017451080	(Get FASTA)	NCBI Sequence Viewer
	XP_038937119	(Get FASTA)	NCBI Sequence Viewer
	XP_038937120	(Get FASTA)	NCBI Sequence Viewer
	XP_038937121	(Get FASTA)	NCBI Sequence Viewer
	XP_038937122	(Get FASTA)	NCBI Sequence Viewer
	XP_038937123	(Get FASTA)	NCBI Sequence Viewer
	XP_038937124	(Get FASTA)	NCBI Sequence Viewer
	XP_038937125	(Get FASTA)	NCBI Sequence Viewer
	XP_038937126	(Get FASTA)	NCBI Sequence Viewer
	XP_038937127	(Get FASTA)	NCBI Sequence Viewer
	XP_038937128	(Get FASTA)	NCBI Sequence Viewer
	XP_038937129	(Get FASTA)	NCBI Sequence Viewer
	XP_038937130	(Get FASTA)	NCBI Sequence Viewer
	XP_038937131	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98948	(Get FASTA)	NCBI Sequence Viewer
	AAI61815	(Get FASTA)	NCBI Sequence Viewer
	EDL77401	(Get FASTA)	NCBI Sequence Viewer
	Q4KLY0	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001032861 ⟸ NM_001037772
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q4KLY0 (UniProtKB/Swiss-Prot), A0A096MIU4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVRVCGSLHVWFLLSFLLVFSTTCAEGHTCQNKGDLAMEALLEGIQTRGHSGGFLTSCEAELQ ELMKQIDIMVAHKKSEWEGQTHALETCLDMRDRELKALRSQLDMKHKEVGILHQQIEEQEKTKQ EMALEYKEELMKLQEELSRLKRSYEKLQKKQLREFRGNTKSLREDRSEIERLTGKIEEFRQKSL DWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRKQKLESVELSSQSEIQHLSSKLERAKD TICANELEIERLNIRVKDLMGTNVTILQEQRQKEEKLRESEKLLEALQEEQKELKASLQAQESF ILDAKMQEKLQTKLKAVDTKHSVERSLEDCQVERKYSSSGQGVLDNVLSQLDISHSSEELLQAE VTRLEGSLESVSTTCKQLSQELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGM KTEISQLTRELHQRDITIASAKCSSSDMERQLKAEMQKAEEKAVEHKEILSQLESLRLENRRLS ETVMKLELGLHECSMPVSPLGLIATRFLEEEELRSHHILERLDAHIEELKRESEKTVRQFTALV hide sequence

RefSeq Acc Id:	NP_001231734 ⟸ NM_001244805
- Peptide Label:	isoform 2
- UniProtKB:	Q4KLY0 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MEALLEGIQTRGHSGGFLTSCEAELQELMKQIDIMVAHKKSEWEGQTHALETCLDMRDRELKAL RSQLDMKHKEVGILHQQIEEQEKTKQEMALEYKEELMKLQEELSRLKRSYEKLQKKQLREFRGN TKSLREDRSEIERLTGKIEEFRQKSLDWEKQRLIYQQQVSSLEAQRKALAEQSEIIQAQLANRK QKLESVELSSQSEIQHLSSKLERAKDTICANELEIERLNIRVKDLMGTNVTILQEQRQKEEKLR ESEKLLEALQEEQKELKASLQAQESFILDAKMQEKLQTKLKAVDTKHSVERSLEDCQVERKYSS SGQGVLDNVLSQLDISHSSEELLQAEVTRLEGSLESVSTTCKQLSQELMEKYEELKRMEGHNNE YRTEIKKLKEQILQADQTYSSALEGMKTEISQLTRELHQRDITIASAKCSSSDMERQLKAEMQK AEEKAVEHKEILSQLESLRLENRRLSETVMKLELGLHECSMPVSPLGLIATRFLEEEELRSHHI LERLDAHIEELKRESEKTVRQFTALV hide sequence

RefSeq Acc Id:

XP_017451080 ⟸ XM_017595591

- Peptide Label:

isoform X5

- Sequence:

show sequence

MGTNVTILQEQRQKEEKLRESEKLLEALQEEQKELKASLQAQESFILDAKMQEKLQTKLKAVDT
KHSVERSLEDCQVERKYSSSGQGVLDNVLSQLDISHSSEELLQAEVTRLEGSLESVSTTCKQLS
QELMEKYEELKRMEGHNNEYRTEIKKLKEQILQADQTYSSALEGMKTEISQLTRELHQRDITIA
SAKCSSSDMERQLKAEMQKAEEKAVEHKEILSQLESLRLENRRLSETVMKLELGLHEAKEISLA
DLQENYIEALNKLVSENQQLQKDLMSTKSQLEHATHMCKKKDGRIFNPAHSRTVGFKNAELKPT
HGQHRHDGIKTEQYKTGHHSPRGQTLDSIDPVARGPSPLSCHISPGSSTISLPSNSVCQARSLP
SMLDINDANFSDNLSDCANDQEEFVSSCSMPVSPLGLIATRFLEEEELRSHHILERLDAHIEEL
KRESEKTVRQFTALV

hide sequence

RefSeq Acc Id:

ENSRNOP00000029550 ⟸ ENSRNOT00000031313

RefSeq Acc Id:

ENSRNOP00000070249 ⟸ ENSRNOT00000084413

RefSeq Acc Id:

ENSRNOP00000053371 ⟸ ENSRNOT00000056531

RefSeq Acc Id:	XP_038937129 ⟸ XM_039081201
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038937127 ⟸ XM_039081199
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038937119 ⟸ XM_039081191
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937126 ⟸ XM_039081198
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038937131 ⟸ XM_039081203
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038937125 ⟸ XM_039081197
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038937121 ⟸ XM_039081193
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937123 ⟸ XM_039081195
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038937124 ⟸ XM_039081196
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038937122 ⟸ XM_039081194
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038937120 ⟸ XM_039081192
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JXF3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937130 ⟸ XM_039081202
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZV14 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937128 ⟸ XM_039081200
- Peptide Label:	isoform X7

RefSeq Acc Id:

ENSRNOP00000092635 ⟸ ENSRNOT00000114079

RefSeq Acc Id:

ENSRNOP00000083027 ⟸ ENSRNOT00000099786

Protein Domains

CEP63

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4KLY0-F1-model_v2	AlphaFold	Q4KLY0	1-538	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696225

Promoter ID:

EPDNEW_R6749

Type:

multiple initiation site

Name:

Cep63_1

Description:

centrosomal protein 63

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	111,107,611 - 111,107,671	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561183	AgrOrtholog
BioCyc Gene	G2FUF-29349	BioCyc
Ensembl Genes	ENSRNOG00000008410	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000029550	ENTREZGENE
	ENSRNOP00000029550.6	UniProtKB/TrEMBL
	ENSRNOP00000053371	ENTREZGENE
	ENSRNOP00000053371.3	UniProtKB/TrEMBL
	ENSRNOP00000070249	ENTREZGENE
	ENSRNOP00000070249.2	UniProtKB/TrEMBL
	ENSRNOP00000083027	ENTREZGENE
	ENSRNOP00000083027.1	UniProtKB/TrEMBL
	ENSRNOP00000092635	ENTREZGENE
	ENSRNOP00000092635.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031313	ENTREZGENE
	ENSRNOT00000031313.7	UniProtKB/TrEMBL
	ENSRNOT00000056531	ENTREZGENE
	ENSRNOT00000056531.5	UniProtKB/TrEMBL
	ENSRNOT00000084413	ENTREZGENE
	ENSRNOT00000084413.2	UniProtKB/TrEMBL
	ENSRNOT00000099786	ENTREZGENE
	ENSRNOT00000099786.1	UniProtKB/TrEMBL
	ENSRNOT00000114079	ENTREZGENE
	ENSRNOT00000114079.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134549	IMAGE-MGC_LOAD
	IMAGE:9031816	IMAGE-MGC_LOAD
InterPro	Cep63	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cep63/Deup1_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:300963	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187263	IMAGE-MGC_LOAD
	MGC:94440	IMAGE-MGC_LOAD
NCBI Gene	300963	ENTREZGENE
PANTHER	PTHR18875:SF7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CEP63	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cep63	PhenoGen
UniProt	A0A096MIU4	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2JXF3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZV14	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AVX5_RAT	UniProtKB/TrEMBL
	A0A8L2UKK7_RAT	UniProtKB/TrEMBL
	CEP63_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-20	Cep63	centrosomal protein 63kDa	LOC300963	similar to centrosome protein Cep63	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-20	Cep63	centrosomal protein 63	Cep63	centrosomal protein 63kDa	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC300963	similar to centrosome protein Cep63			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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