Fbxo31 (F-box protein 31) - Rat Genome Database

Name: Fbxo31
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Fbxo31 (F-box protein 31) Rattus norvegicus

Analyze

Symbol:

Fbxo31

Name:

F-box protein 31

RGD ID:

1561069

Description:

Predicted to enable cyclin binding activity. Involved in positive regulation of dendrite morphogenesis and positive regulation of neuron migration. Located in centrosome. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human FBXO31 (F-box protein 31); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

F-box only protein 31; LOC498959; MGC125122; RGD1561069; similar to F-box only protein 31

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO31 (F-box protein 31)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Fbxo31 (F-box protein 31)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Fbxo31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo31 (F-box protein 31)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FBXO31 (F-box protein 31)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Mus musculus (house mouse):	Fbxo31 (F-box protein 31)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	fbxo31 (F-box protein 31)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	49,624,818 - 49,656,083 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	19	49,627,686 - 49,656,010 (-)	Ensembl
Rnor_6.0	19	53,487,610 - 53,625,673 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	53,487,613 - 53,625,673 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	64,224,819 - 64,363,108 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	51,836,918 - 51,837,223 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	19	48,874,360 - 48,902,812 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

16Q24.3 Microdeletion Syndrome (ISO)

congenital nongoitrous hypothyroidism 2 (ISO)

Intellectual Developmental Disorder, Autosomal Recessive 45 (ISO)

persistent fetal circulation syndrome (ISO)

spastic cerebral palsy (ISO)

thyroid malformation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aldrin (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

buspirone (EXP)

carbon nanotube (ISO)

chloroprene (ISO)

ciguatoxin CTX1B (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

finasteride (EXP)

flutamide (EXP)

formaldehyde (ISO)

furan (ISO)

gentamycin (EXP)

isoprenaline (ISO)

leflunomide (EXP)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

quercetin (ISO)

rotenone (EXP)

SB 431542 (ISO)

sunitinib (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anaphase-promoting complex-dependent catabolic process (ISO,ISS)

cellular response to DNA damage stimulus (ISO,ISS)

mitotic G1 DNA damage checkpoint signaling (ISO,ISS)

positive regulation of dendrite morphogenesis (IMP)

positive regulation of neuron migration (IMP)

protein ubiquitination (IEA)

SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (IBA,ISO,ISS)

Cellular Component

centrosome (IDA)

neuronal cell body (ISO,ISS)

SCF ubiquitin ligase complex (IBA,ISO,ISS)

Molecular Function

cyclin binding (ISO)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions
4.	Vadhvani M, etal., PLoS One. 2013;8(2):e57530. doi: 10.1371/journal.pone.0057530. Epub 2013 Feb 28.

Additional References at PubMed

PMID:12477932	PMID:19028597	PMID:19412162	PMID:24623383

Genomics

Comparative Map Data

Fbxo31
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	49,624,818 - 49,656,083 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	19	49,627,686 - 49,656,010 (-)	Ensembl
Rnor_6.0	19	53,487,610 - 53,625,673 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	53,487,613 - 53,625,673 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	64,224,819 - 64,363,108 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	51,836,918 - 51,837,223 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	19	48,874,360 - 48,902,812 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

FBXO31
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	87,326,987 - 87,392,121 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	87,326,987 - 87,392,142 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	87,360,593 - 87,425,727 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	85,920,443 - 85,974,864 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	16	85,920,444 - 85,974,864	NCBI
Celera	16	71,659,646 - 71,722,476 (-)	NCBI
Cytogenetic Map	16	q24.2	NCBI
HuRef	16	73,106,044 - 73,168,796 (-)	NCBI		HuRef
CHM1_1	16	88,774,754 - 88,837,518 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	93,397,874 - 93,463,013 (-)	NCBI

Fbxo31
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	122,276,182 - 122,305,607 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	122,276,179 - 122,305,545 (-)	Ensembl
GRCm38	8	121,549,443 - 121,578,864 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	121,549,440 - 121,578,806 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	124,075,879 - 124,102,706 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	124,437,993 - 124,464,843 (-)	NCBI			mm8
Celera	8	125,773,510 - 125,800,328 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI

Fbxo31
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	1,811,010 - 1,828,724 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955541	1,811,010 - 1,828,734 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBXO31
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	87,322,364 - 87,377,104 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	87,322,364 - 87,377,104 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	67,997,481 - 68,053,081 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

FBXO31
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	65,703,591 - 65,734,956 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	65,703,575 - 65,731,056 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	65,701,948 - 65,746,369 (+)	NCBI
ROS_Cfam_1.0	5	65,912,307 - 65,956,714 (+)	NCBI
UMICH_Zoey_3.1	5	65,936,368 - 65,980,668 (+)	NCBI
UNSW_CanFamBas_1.0	5	65,768,645 - 65,813,053 (+)	NCBI
UU_Cfam_GSD_1.0	5	66,182,624 - 66,227,196 (+)	NCBI

Fbxo31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	26,048,159 - 26,078,443 (+)	NCBI
SpeTri2.0	NW_004936641	1,801,539 - 1,831,988 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO31
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	1,949,254 - 1,995,464 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	1,949,254 - 1,995,459 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	2,037,200 - 2,081,398 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO31
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	72,696,868 - 72,752,480 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	5	72,701,136 - 72,752,989 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666047	2,944,370 - 3,001,044 (+)	NCBI	Vero_WHO_p1.0

Fbxo31
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	3,043,600 - 3,078,223 (-)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624746	3,034,458 - 3,078,230 (-)	NCBI	HetGla_female_1.0		hetGla2

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum insulin level (CMO:0000358)	19	33838214	55283146	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	235
Count of miRNA genes:	139
Interacting mature miRNAs:	159
Transcripts:	ENSRNOT00000068764, ENSRNOT00000074005
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	25	26	22	3	22	7	10	74	30	30	2	7
Low	1	18	31	19	16	19	1	1		5	11	9	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC110046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000068764 ⟹ ENSRNOP00000063581

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	49,627,686 - 49,656,010 (-)	Ensembl
Rnor_6.0 Ensembl	19	53,487,619 - 53,625,673 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000074005 ⟹ ENSRNOP00000067191

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	53,487,613 - 53,497,006 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079651 ⟹ ENSRNOP00000070481

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	49,627,686 - 49,656,010 (-)	Ensembl
Rnor_6.0 Ensembl	19	53,487,826 - 53,625,665 (-)	Ensembl

RefSeq Acc Id:

NM_001044259 ⟹ NP_001037724

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	49,627,683 - 49,656,010 (-)	NCBI
Rnor_6.0	19	53,487,616 - 53,625,673 (-)	NCBI
Rnor_5.0	19	64,224,819 - 64,363,108 (-)	NCBI
RGSC_v3.4	19	51,836,918 - 51,837,223 (-)	RGD
Celera	19	48,874,360 - 48,902,812 (-)	RGD

Sequence:

show sequence

TGACGGGCATGGCGGTGTGTGCTCGGCTCTGCGGCGTGGGCCCCGCGCGTGGGTGCCGCCGCCG
CCAGCAGCGCCGCGGCCCGGCCGAGACTGCGGCGGCGGACAGTGAGGCGGACACGGACCCCGAG
GAGGAGCGCATCGAGGCGGGGCCGGCGCGTTGCTCCCTGCTGGAGCTGCCTCCCGAGCTGCTAG
TGGAGATCTTCGCGTCGCTGCCCGGCACCGACCTGCCCAGCCTGGCGCAGGTCTGCAGCAGGTT
CCGTCGCATCCTGCACACCGACACCATCTGGAGAAGGCGCTGCCGCGAGGAGTATGGCGTTTGT
GAGAACCTGCGGAAGCTGGAGATCACAGGCGTGTCTTGCCGGGACGTCTATGCCAAGCTGCTTC
ACCGGTACAGACACATTTTGGGGCTGTGGCAGCCAGATATTGGGCCGTATGGAGGATTGCTGAA
CGTCGTGGTGGATGGACTCTTCATCATCGGGTGGATGTACCTGCCTCCTCATGACCCCCACGTT
GGCGACCCCATGCGATTCAAGCCCCTATTTAGGATCCATCTGATGGAGAGGAAGTCGGCCACGG
TGGAGTGTATGTACGGCCACAAAGGGCCCCACAATGGCCATATCCAGATTGTGAAGAGGGATGA
GTTCTCCACCAAGTGTAACCAGACAGATCACCACAGGATGTCTGGTGGGAGGCAGGAGGAGTTT
CGGACGTGGCTGAGGGAGGAGTGGGGCCGCACGCTGGAAGACATCTTCCACGAGCACATGCAGG
AGCTGATTCTGATGAAGTTCATCTACACCAGTCAGTACGACAACTGCCTGACCTACCGGCGGAT
CTACCTCCCTCCCAGCCACCCCGATGACCTCATCAAGCCTGGCCTCTTTAAGGGCACCTACGGC
AGCCATGGGCTGGAAATCGTGATGCTTAGCTTCCACGGCTCTCGTGCCAGGGGCACCAAGATCA
CGGGCGACCCCAACATCCCCGCGGGGCAGCAGACTGTGGAGATTGACCTGCAGCGCCGCATCCA
GCTGCCAGACGTGGAGAACCTCCGAAACTTCAATGAGCTCTCCAGGATCGTCCTGGAGGTCCGG
GAGCAGGTGCGGCAGGAGCAGGAGGCTGGCGAGGGCCCCGCTCCACACCGGGAGCCTGCAGTCA
AGGACCCTGAAGGGCCACCTGCTAAGGCCAGCAAAGAGGCCGGCCCTGGAGCTGAGGCCGCTGA
GCAGTCATCCACGTCTGGGCAGGGACAGCCGTTTGTGCTTCCTGCGGGTGTCAGCTCGAGGAAT
GAGGATTACCCCCGCACCTGCCGGTTATGTTTCTATGGCACAGGCCTCATCGCTGGCCATGGCT
TTACGAGCCCCGAGCGTACCCCCGGCGTCTTCGTCCTGTTCGATGAGGACCGCTTTGGGTTTCT
CTGGCTGGAACTGAAGTCCTTCAGTCTGTACAGCCGAGTCCAGGCCACCTTCCAGAACGCCGAC
GCACCATCGCCACAGGCCTTCGATGAGATGCTCAGGAACATCCAGTCTCTCACCTCCTGACCTC
CTCGTGGGCGGGCGGAGAGGCCGCGCCGGCGCCCGGGTGGGGGAAGCATGCACTTTAGAAATGA
ACGCACACCTCCTCACCGGGGTCCTGGTCGCCCTGAGACGCCCTTGTATAGTGTGTAACATACT
CTTGTACATTTGATTTGTTGGTAGCTATGAAGGTGAACGTGAAGCACTGTGGGAAAATAAACGG
AGTTGAGCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039097937 ⟹ XP_038953865

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	49,624,818 - 49,656,083 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001037724	(Get FASTA)	NCBI Sequence Viewer
	XP_038953865	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI10047	(Get FASTA)	NCBI Sequence Viewer
	AAI66840	(Get FASTA)	NCBI Sequence Viewer
	B2RYN2	(Get FASTA)	NCBI Sequence Viewer
	EDL92722	(Get FASTA)	NCBI Sequence Viewer
	EDL92723	(Get FASTA)	NCBI Sequence Viewer
	EDL92724	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001037724 ⟸ NM_001044259

- UniProtKB:

B2RYN2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAVCARLCGVGPARGCRRRQQRRGPAETAAADSEADTDPEEERIEAGPARCSLLELPPELLVEI
FASLPGTDLPSLAQVCSRFRRILHTDTIWRRRCREEYGVCENLRKLEITGVSCRDVYAKLLHRY
RHILGLWQPDIGPYGGLLNVVVDGLFIIGWMYLPPHDPHVGDPMRFKPLFRIHLMERKSATVEC
MYGHKGPHNGHIQIVKRDEFSTKCNQTDHHRMSGGRQEEFRTWLREEWGRTLEDIFHEHMQELI
LMKFIYTSQYDNCLTYRRIYLPPSHPDDLIKPGLFKGTYGSHGLEIVMLSFHGSRARGTKITGD
PNIPAGQQTVEIDLQRRIQLPDVENLRNFNELSRIVLEVREQVRQEQEAGEGPAPHREPAVKDP
EGPPAKASKEAGPGAEAAEQSSTSGQGQPFVLPAGVSSRNEDYPRTCRLCFYGTGLIAGHGFTS
PERTPGVFVLFDEDRFGFLWLELKSFSLYSRVQATFQNADAPSPQAFDEMLRNIQSLTS

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RefSeq Acc Id:

ENSRNOP00000070481 ⟸ ENSRNOT00000079651

RefSeq Acc Id:

ENSRNOP00000063581 ⟸ ENSRNOT00000068764

RefSeq Acc Id:

ENSRNOP00000067191 ⟸ ENSRNOT00000074005

RefSeq Acc Id:	XP_038953865 ⟸ XM_039097937
- Peptide Label:	isoform X1

Protein Domains

F-box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYN2-F1-model_v2	AlphaFold	B2RYN2	1-507	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701191

Promoter ID:

EPDNEW_R11714

Type:

initiation region

Name:

Fbxo31_1

Description:

F-box protein 31

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	53,625,684 - 53,625,744	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561069	AgrOrtholog
BioCyc Gene	G2FUF-5429	BioCyc
Ensembl Genes	ENSRNOG00000042274	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000063581	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000067191	UniProtKB/TrEMBL
	ENSRNOP00000070481	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000068764	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000074005	UniProtKB/TrEMBL
	ENSRNOT00000079651	ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7302542	IMAGE-MGC_LOAD
	IMAGE:9027777	IMAGE-MGC_LOAD
InterPro	F-box-like_dom_sf	UniProtKB/Swiss-Prot
	F-box_dom	UniProtKB/Swiss-Prot
	FBXO31	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FBXO31/39	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:498959	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125122	IMAGE-MGC_LOAD
	MGC:188731	IMAGE-MGC_LOAD
NCBI Gene	498959	ENTREZGENE
PANTHER	PTHR10706	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR10706:SF130	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	F-box-like	UniProtKB/Swiss-Prot
PhenoGen	Fbxo31	PhenoGen
PROSITE	FBOX	UniProtKB/Swiss-Prot
SMART	FBOX	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF81383	UniProtKB/Swiss-Prot
UniProt	B2RYN2	ENTREZGENE, UniProtKB/Swiss-Prot
	Q2YDU9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-12-02	Fbxo31	F-box protein 31	RGD1561069	similar to F-box only protein 31	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1561069	similar to F-box only protein 31	RGD1561069_predicted	similar to F-box only protein 31 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1561069_predicted	similar to F-box only protein 31 (predicted)	LOC498959	similar to F-box only protein 31	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498959	similar to F-box only protein 31			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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