Rps27a-ps5 (ribosomal protein S27a, pseudogene 5) - Rat Genome Database

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Gene: Rps27a-ps5 (ribosomal protein S27a, pseudogene 5) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps27a-ps5 (Ensembl: AABR07037998.1)
Name: ribosomal protein S27a, pseudogene 5
RGD ID: 1560997
Description: Predicted to be involved in translation; INTERACTS WITH bisphenol A.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07037998.1; LOC367795; RGD1560997; similar to ribosomal protein S27a
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps27a  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X34,393,983 - 34,394,450 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX34,393,954 - 34,394,418 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX35,551,245 - 35,551,712 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0X39,013,066 - 39,013,533 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0X36,688,948 - 36,689,415 (+)NCBIRnor_WKY
Rnor_6.0X37,026,437 - 37,026,904 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX37,026,408 - 37,026,872 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0X37,347,787 - 37,348,279 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X55,681,146 - 55,681,574 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX35,069,715 - 35,070,182 (+)NCBICelera
Cytogenetic MapXq14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps27a-ps5
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598873Memor2Memory QTL 22.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)X2099094741052531Rat
2290375Gluco34Glucose level QTL 342.75blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X2099094741203591Rat

Markers in Region
DXGot29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X34,393,771 - 34,394,019 (+)MAPPERmRatBN7.2
Rnor_6.0X37,026,226 - 37,026,473NCBIRnor6.0
Rnor_5.0X37,347,593 - 37,347,840UniSTSRnor5.0
RGSC_v3.4X55,680,927 - 55,681,175RGDRGSC3.4
RGSC_v3.4X55,680,928 - 55,681,175UniSTSRGSC3.4
RGSC_v3.1X55,734,397 - 55,734,644RGD
CeleraX35,069,504 - 35,069,751UniSTS
RH 3.4 MapX490.2UniSTS
RH 3.4 MapX490.2RGD
RH 2.0 Map21387.1RGD
Cytogenetic MapXq21UniSTS
PMC280674P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14q22UniSTS
Cytogenetic MapXq21UniSTS
Cytogenetic Map19q11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000051805   ⟹   ENSRNOP00000048979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX34,393,954 - 34,394,418 (+)Ensembl
RefSeq Acc Id: XM_001053937   ⟹   XP_001053937
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX35,069,698 - 35,070,190 (+)NCBI
RefSeq Acc Id: XM_346305   ⟹   XP_346306
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0X37,347,787 - 37,348,279 (+)NCBI
RGSC_v3.4X55,681,146 - 55,681,574 (+)RGD
Protein Sequences
Reference Sequences
RefSeq Acc Id: XP_001053937   ⟸   XM_001053937
- Sequence:
RefSeq Acc Id: XP_346306   ⟸   XM_346305
- Sequence:
RefSeq Acc Id: ENSRNOP00000048979   ⟸   ENSRNOT00000051805
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M927-F1-model_v2 AlphaFold F1M927 1-154 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560997 AgrOrtholog
BioCyc Gene G2FUF-2501 BioCyc
Ensembl Genes ENSRNOG00000032132 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048979.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051805.5 UniProtKB/TrEMBL
Gene3D-CATH 6.20.50.150 UniProtKB/TrEMBL
InterPro Ribosomal_S27a UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
  S27a-like_sf UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
NCBI Gene 367795 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S27A-RELATED UniProtKB/TrEMBL
  UBIQUITIN UniProtKB/TrEMBL
Pfam Ribosomal_S27 UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PhenoGen Rps27a-ps5 PhenoGen
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART Ribosomal_S27 UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  SSF57829 UniProtKB/TrEMBL
UniProt F1M927_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Rps27a-ps5  ribosomal protein S27a, pseudogene 5  AABR07037998.1    Data Merged 737654 PROVISIONAL
2019-11-08 AABR07037998.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-05-18 Rps27a-ps5  ribosomal protein S27a, pseudogene 5  RGD1560997  similar to ribosomal protein S27a  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1560997  similar to ribosomal protein S27a   RGD1560997_predicted  similar to ribosomal protein S27a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560997_predicted  similar to ribosomal protein S27a (predicted)  LOC367795  similar to ribosomal protein S27a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC367795  similar to ribosomal protein S27a      Symbol and Name status set to provisional 70820 PROVISIONAL