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Gene: Pax9 (paired box 9) Rattus norvegicus
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Symbol: Pax9
Name: paired box 9
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including face morphogenesis; regulation of odontogenesis; and regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human PAX9 (paired box 9); INTERACTS WITH 17beta-estradiol 3-benzoate; acrylamide; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC362741; paired box gene 9; paired box protein Pax-9; similar to transcription factor
Orthologs:
Homo sapiens (human) : PAX9 (paired box 9)  HGNC  Alliance
Mus musculus (house mouse) : Pax9 (paired box 9)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pax9 (paired box 9)
Pan paniscus (bonobo/pygmy chimpanzee) : PAX9 (paired box 9)
Canis lupus familiaris (dog) : PAX9 (paired box 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pax9 (paired box 9)
Sus scrofa (pig) : PAX9 (paired box 9)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0677,607,705 - 77,624,453 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl677,608,624 - 77,621,719 (+)Ensembl
Rnor_5.0687,133,943 - 87,150,691 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4677,107,768 - 77,124,520 (+)NCBIRGSC3.4rn4RGSC3.4
Celera672,993,727 - 73,010,469 (+)NCBICelera
Cytogenetic Map6q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pax9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1560838
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.