Zfp827 (zinc finger protein 827) - Rat Genome Database

Name: Zfp827
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp827 (zinc finger protein 827) Rattus norvegicus

Analyze

Symbol:

Zfp827

Name:

zinc finger protein 827

RGD ID:

1560620

Description:

Predicted to enable NuRD complex binding activity. Predicted to be involved in several processes, including establishment of protein localization to telomere; negative regulation of shelterin complex assembly; and telomere maintenance. Predicted to be located in chromosome, telomeric region. Predicted to be part of chromatin and ribonucleoprotein complex. Orthologous to human ZNF827 (zinc finger protein 827); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC291940; RGD1560620; similar to hypothetical protein

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF827 (zinc finger protein 827)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Zfp827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf827 (zinc finger protein 827)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Zfp827 (zinc finger protein 827)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF827 (zinc finger protein 827)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf827 (zinc finger protein 827)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf827	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	28,720,568 - 28,887,381 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	28,721,021 - 28,887,191 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	35,575,880 - 35,742,477 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	36,229,974 - 36,396,568 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	38,465,230 - 38,632,017 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	32,396,155 - 32,616,648 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	32,401,661 - 32,528,965 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	43,291,783 - 43,457,610 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	30,559,533 - 30,697,841 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	28,231,627 - 28,244,663 (-)	NCBI		Celera
Celera	19	28,279,410 - 28,445,969 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

genetic disease (ISO)

methylmalonic acidemia cblA type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlordecone (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclophosphamide (EXP)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

gallic acid (ISO)

L-methionine (ISO)

lead diacetate (ISO)

lenalidomide (ISO)

Licochalcone B (ISO)

manganese(II) chloride (EXP)

methotrexate (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

permethrin (EXP)

potassium chromate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (ISO)

zinc protoporphyrin (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (ISO)

establishment of protein localization to telomere (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of shelterin complex assembly (ISO)

regulation of gene expression (IBA)

telomere maintenance (ISO)

Cellular Component

chromatin (ISO)

chromosome, telomeric region (ISO)

nucleus (IBA)

ribonucleoprotein complex (ISO)

Molecular Function

NuRD complex binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp827
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	28,720,568 - 28,887,381 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	28,721,021 - 28,887,191 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	35,575,880 - 35,742,477 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	19	36,229,974 - 36,396,568 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	19	38,465,230 - 38,632,017 (-)	NCBI	Rnor_WKY
Rnor_6.0	19	32,396,155 - 32,616,648 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	32,401,661 - 32,528,965 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	43,291,783 - 43,457,610 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	30,559,533 - 30,697,841 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	28,231,627 - 28,244,663 (-)	NCBI		Celera
Celera	19	28,279,410 - 28,445,969 (-)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

ZNF827
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	145,757,627 - 145,938,823 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	4	145,757,627 - 145,938,823 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	146,678,779 - 146,859,975 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	146,901,324 - 147,079,057 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	144,009,499 - 144,187,313 (-)	NCBI		Celera
Cytogenetic Map	4	q31.21-q31.22	NCBI
HuRef	4	142,410,679 - 142,588,745 (-)	NCBI		HuRef
CHM1_1	4	146,659,180 - 146,836,920 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	149,073,653 - 149,254,873 (-)	NCBI		T2T-CHM13v2.0

Zfp827
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	79,753,754 - 79,920,397 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	79,755,066 - 79,920,395 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	79,027,486 - 79,193,768 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	79,028,437 - 79,193,766 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	81,552,336 - 81,717,665 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	81,924,183 - 82,089,840 (+)	NCBI		MGSCv36	mm8
Celera	8	83,305,392 - 83,470,870 (+)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI

Znf827
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	1,545,758 - 1,718,779 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	1,545,802 - 1,718,686 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF827
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	4	143,996,526 - 144,177,544 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	138,098,155 - 138,279,102 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	149,756,907 - 149,937,620 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	149,756,907 - 149,937,654 (-)	Ensembl	panpan1.1		panPan2

ZNF827
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	44,300,109 - 44,469,337 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	44,303,300 - 44,468,680 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	44,691,789 - 44,860,458 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	44,967,563 - 45,136,365 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	44,969,595 - 45,136,601 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	44,240,934 - 44,409,387 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	44,328,123 - 44,496,855 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	44,593,023 - 44,761,671 (-)	NCBI		UU_Cfam_GSD_1.0

Znf827
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	45,845,197 - 46,008,722 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936535	3,282,586 - 3,447,435 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936535	3,282,572 - 3,445,277 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF827
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	82,596,659 - 82,783,676 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	82,596,560 - 82,783,691 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	87,915,039 - 88,108,048 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF827
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	92,315,242 - 92,489,741 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	92,315,080 - 92,489,762 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	71,966,803 - 72,141,324 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf827
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624853	4,630,712 - 4,799,399 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624853	4,633,005 - 4,799,000 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp827
640 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	146
Count of miRNA genes:	103
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000015929, ENSRNOT00000059838
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631678	Cm9	Cardiac mass QTL 9	4.27	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	19	1	28982497	Rat
631681	Cm12	Cardiac mass QTL 12	3.33	0.00053	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	19	1	28982497	Rat
1549847	Bss8	Bone structure and strength QTL 8	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	19	1	31963836	Rat
9590298	Uminl5	Urine mineral level QTL 5	3.59	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	19	1	36824771	Rat
8552935	Pigfal10	Plasma insulin-like growth factor 1 level QTL 10	5.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	19	1	36824771	Rat
9590250	Scort11	Serum corticosterone level QTL 11	23.45	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	19	1	36824771	Rat
9590090	Insglur8	Insulin/glucose ratio QTL 8	10.81	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	19	1	36824771	Rat
9589102	Slep13	Serum leptin concentration QTL 13	4.63	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	19	569374	45569374	Rat
8694186	Bw152	Body weight QTL 152	3.34	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	569374	45569374	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2187927	46708701	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	2316121	47316121	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	7457249	42983518	Rat
724565	Tcas5	Tongue tumor susceptibility QTL 5	10.04		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	19	9977753	39654489	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10827970	43544039	Rat
61407	Scl12	Serum cholesterol level QTL 12		0.001	blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	19	13926401	30303727	Rat
1558656	Prcs1	Prostate cancer susceptibility QTL 1	5		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	19	15114598	34521833	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	15605023	46559041	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
61328	Eae8	Experimental allergic encephalomyelitis QTL 8	4		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	19	24816041	33061905	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	24817978	39654489	Rat
1354600	Salc2	Saline consumption QTL 2	9.91	0.001	drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	19	27530207	37947399	Rat
1354607	Gmadr1	Adrenal mass QTL 1	5.83		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	19	27530207	37947399	Rat
1354633	Bw28	Body weight QTL 28	6.04		body mass (VT:0001259)	body weight (CMO:0000012)	19	27530207	37947399	Rat

Markers in Region

RH139997

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	28,765,478 - 28,765,662 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	32,441,208 - 32,441,391	NCBI	Rnor6.0
Rnor_5.0	19	43,337,046 - 43,337,229	UniSTS	Rnor5.0
RGSC_v3.4	19	30,603,219 - 30,603,402	UniSTS	RGSC3.4
Celera	19	28,272,413 - 28,272,596	UniSTS
RH 3.4 Map	19	216.0	UniSTS
Cytogenetic Map	19	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	11	4	7	4			68	24	33	4
Low		17	31	22	12	22	8	11	6	11	8	7	8
Below cutoff			15	15		15

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001400944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008774221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000015929 ⟹ ENSRNOP00000015929

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	28,723,519 - 28,870,362 (-)	Ensembl
Rnor_6.0 Ensembl	19	32,401,661 - 32,528,965 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103444 ⟹ ENSRNOP00000085193

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	28,721,021 - 28,887,191 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104001 ⟹ ENSRNOP00000091843

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	28,721,021 - 28,887,191 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117381 ⟹ ENSRNOP00000092352

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	28,723,519 - 28,886,857 (-)	Ensembl

RefSeq Acc Id:

XM_039098163 ⟹ XP_038954091

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,885,449 (-)	NCBI

RefSeq Acc Id:

XM_039098164 ⟹ XP_038954092

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,887,381 (-)	NCBI

RefSeq Acc Id:

XM_039098165 ⟹ XP_038954093

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,880,153 (-)	NCBI

RefSeq Acc Id:

XM_039098166 ⟹ XP_038954094

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,885,448 (-)	NCBI

RefSeq Acc Id:

XM_039098167 ⟹ XP_038954095

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,885,447 (-)	NCBI

RefSeq Acc Id:

XM_039098168 ⟹ XP_038954096

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,724,481 - 28,885,447 (-)	NCBI

RefSeq Acc Id:

XM_039098169 ⟹ XP_038954097

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,887,380 (-)	NCBI

RefSeq Acc Id:

XM_039098170 ⟹ XP_038954098

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,724,503 - 28,885,448 (-)	NCBI

RefSeq Acc Id:

XM_039098171 ⟹ XP_038954099

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,724,503 - 28,885,445 (-)	NCBI

RefSeq Acc Id:

XM_039098172 ⟹ XP_038954100

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,724,353 - 28,885,449 (-)	NCBI

RefSeq Acc Id:

XM_039098173 ⟹ XP_038954101

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,851,531 (-)	NCBI

RefSeq Acc Id:

XM_039098174 ⟹ XP_038954102

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,887,381 (-)	NCBI

RefSeq Acc Id:

XM_039098175 ⟹ XP_038954103

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	19	28,720,568 - 28,851,672 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001387873	(Get FASTA)	NCBI Sequence Viewer
	XP_038954091	(Get FASTA)	NCBI Sequence Viewer
	XP_038954092	(Get FASTA)	NCBI Sequence Viewer
	XP_038954093	(Get FASTA)	NCBI Sequence Viewer
	XP_038954094	(Get FASTA)	NCBI Sequence Viewer
	XP_038954095	(Get FASTA)	NCBI Sequence Viewer
	XP_038954096	(Get FASTA)	NCBI Sequence Viewer
	XP_038954097	(Get FASTA)	NCBI Sequence Viewer
	XP_038954098	(Get FASTA)	NCBI Sequence Viewer
	XP_038954099	(Get FASTA)	NCBI Sequence Viewer
	XP_038954100	(Get FASTA)	NCBI Sequence Viewer
	XP_038954101	(Get FASTA)	NCBI Sequence Viewer
	XP_038954102	(Get FASTA)	NCBI Sequence Viewer
	XP_038954103	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92317	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

ENSRNOP00000015929 ⟸ ENSRNOT00000015929

RefSeq Acc Id:	XP_038954102 ⟸ XM_039098174
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038954092 ⟸ XM_039098164
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038954097 ⟸ XM_039098169
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038954091 ⟸ XM_039098163
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038954094 ⟸ XM_039098166
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038954095 ⟸ XM_039098167
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038954093 ⟸ XM_039098165
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038954103 ⟸ XM_039098175
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038954101 ⟸ XM_039098173
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038954100 ⟸ XM_039098172
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038954096 ⟸ XM_039098168
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038954098 ⟸ XM_039098170
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038954099 ⟸ XM_039098171
- Peptide Label:	isoform X9

RefSeq Acc Id:

ENSRNOP00000091843 ⟸ ENSRNOT00000104001

RefSeq Acc Id:

ENSRNOP00000092352 ⟸ ENSRNOT00000117381

RefSeq Acc Id:

ENSRNOP00000085193 ⟸ ENSRNOT00000103444

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LVT1-F1-model_v2	AlphaFold	F1LVT1	1-1065	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560620	AgrOrtholog
BioCyc Gene	G2FUF-5943	BioCyc
Ensembl Genes	ENSRNOG00000011697	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000015929	ENTREZGENE
	ENSRNOP00000015929.8	UniProtKB/TrEMBL
	ENSRNOP00000085193	ENTREZGENE
	ENSRNOP00000085193.1	UniProtKB/TrEMBL
	ENSRNOP00000091843.1	UniProtKB/TrEMBL
	ENSRNOP00000092352	ENTREZGENE
	ENSRNOP00000092352.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015929	ENTREZGENE
	ENSRNOT00000015929.9	UniProtKB/TrEMBL
	ENSRNOT00000103444	ENTREZGENE
	ENSRNOT00000103444.1	UniProtKB/TrEMBL
	ENSRNOT00000104001.1	UniProtKB/TrEMBL
	ENSRNOT00000117381	ENTREZGENE
	ENSRNOT00000117381.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	291940	ENTREZGENE
PANTHER	RE1-SILENCING TRANSCRIPTION FACTOR	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 827	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp827	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6ACV6_RAT	UniProtKB/TrEMBL
	A0A8I6AI01	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GCK4_RAT	UniProtKB/TrEMBL
	F1LVT1_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Zfp827	zinc finger protein 827	RGD1560620	similar to hypothetical protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1560620	similar to hypothetical protein	RGD1560620_predicted	similar to hypothetical protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1560620_predicted	similar to hypothetical protein (predicted)	LOC291940	similar to hypothetical protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC291940	similar to hypothetical protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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