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Gene: Sobp (sine oculis binding protein homolog) Rattus norvegicus
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Symbol: Sobp
Name: sine oculis binding protein homolog
Description: Predicted to have SUMO polymer binding activity. Predicted to be involved in several processes, including inner ear development; locomotory behavior; and sensory perception of sound. Predicted to localize to the nucleus. Orthologous to human SOBP (sine oculis binding protein homolog); INTERACTS WITH bisphenol A; vinclozolin; (+)-catechin (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: jackson circler protein 1; jcx1; LOC309860; RGD1560479; similar to RIKEN cDNA 5330439J01; sine oculis-binding protein homolog; sine oculis-binding protein homolog (Drosophila); sine oculis-binding protein homolog-like; sine oculis-binding protein homolog-like (Drosophila); Sobpl
Orthologs:
Homo sapiens (human) : SOBP (sine oculis binding protein homolog)  HGNC  Alliance
Mus musculus (house mouse) : Sobp (sine oculis binding protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sobp (sine oculis binding protein homolog)
Pan paniscus (bonobo/pygmy chimpanzee) : SOBP (sine oculis binding protein homolog)
Canis lupus familiaris (dog) : SOBP (sine oculis binding protein homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sobp (sine oculis binding protein homolog)
Sus scrofa (pig) : SOBP (sine oculis binding protein homolog)
Chlorocebus sabaeus (African green monkey) : SOBP (sine oculis binding protein homolog)
Heterocephalus glaber (naked mole-rat) : Sobp (sine oculis binding protein homolog)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02047,731,713 - 47,910,466 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2047,750,762 - 47,910,375 (-)Ensembl
Rnor_5.02049,392,717 - 49,571,453 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42046,918,487 - 47,079,823 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2053,318,595 - 53,477,647 (+)NCBICelera
Cytogenetic Map20q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Sobp
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1560479
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.