Tfdp1 (transcription factor Dp-1) - Rat Genome Database

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Gene: Tfdp1 (transcription factor Dp-1) Rattus norvegicus
Analyze
Symbol: Tfdp1
Name: transcription factor Dp-1
RGD ID: 1560344
Description: Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and cis-regulatory region sequence-specific DNA binding activity. Predicted to contribute to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including negative regulation of fat cell proliferation; positive regulation of G1/S transition of mitotic cell cycle; and regulation of DNA-templated transcription. Predicted to act upstream of or within anoikis; epidermis development; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of Rb-E2F complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in mismatch repair cancer syndrome. Orthologous to several human genes including TFDP1 (transcription factor Dp-1); PARTICIPATES IN cell cycle pathway, mitotic; transforming growth factor-beta superfamily mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; finasteride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC361178; MGC112830; similar to transcription factor; uncharacterized protein LOC361178
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,864,220 - 82,903,166 (-)NCBIGRCr8
GRCr8 Ensembl1682,864,226 - 82,902,996 (-)EnsemblGRCr8 Ensembl
mRatBN7.21676,162,040 - 76,200,871 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,162,043 - 76,200,817 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,442,633 - 81,480,565 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,895,591 - 84,933,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,144,444 - 80,182,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,088,642 - 81,127,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,089,292 - 81,127,257 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01680,578,421 - 80,615,804 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,018,040 - 81,056,049 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1673,969,240 - 74,007,155 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
2-naphthylamine  (ISO)
3-[3-(tert-butylsulfanyl)-1-(4-chlorobenzyl)-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-nitrophenol  (ISO)
5-fluorouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antimycin A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chlorpromazine  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
deguelin  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
disodium selenite  (ISO)
Enterolactone  (ISO)
epoxiconazole  (ISO)
fenpyroximate  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
genistein  (EXP)
gentamycin  (EXP)
geraniol  (ISO)
glyphosate  (ISO)
GW 3965  (ISO)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
inulin  (ISO)
methapyrilene  (EXP,ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nicotine  (ISO)
okadaic acid  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylephrine  (EXP)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sulindac  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
tebufenpyrad  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP,ISO)
thiram  (ISO)
toluene 2,4-diisocyanate  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Frameshift mutational target gene analysis identifies similarities and differences in constitutional mismatch repair-deficiency and Lynch syndrome. Maletzki C, etal., Mol Carcinog. 2017 Jul;56(7):1753-1764. doi: 10.1002/mc.22632. Epub 2017 Mar 30.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:7739537   PMID:7797074   PMID:10082561   PMID:11331592   PMID:14667810   PMID:15448153   PMID:16360038   PMID:17062573   PMID:20176812   PMID:25940086   PMID:27825926  


Genomics

Comparative Map Data
Tfdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81682,864,220 - 82,903,166 (-)NCBIGRCr8
GRCr8 Ensembl1682,864,226 - 82,902,996 (-)EnsemblGRCr8 Ensembl
mRatBN7.21676,162,040 - 76,200,871 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1676,162,043 - 76,200,817 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1681,442,633 - 81,480,565 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01684,895,591 - 84,933,522 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01680,144,444 - 80,182,288 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01681,088,642 - 81,127,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1681,089,292 - 81,127,257 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01680,578,421 - 80,615,804 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41681,018,040 - 81,056,049 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1673,969,240 - 74,007,155 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
TFDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813113,584,688 - 113,641,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13113,584,721 - 113,641,473 (+)EnsemblGRCh38hg38GRCh38
GRCh3713114,239,003 - 114,295,788 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613113,287,057 - 113,343,505 (+)NCBINCBI36Build 36hg18NCBI36
Build 3413113,287,056 - 113,343,503NCBI
Celera1395,066,242 - 95,123,044 (+)NCBICelera
Cytogenetic Map13q34NCBI
HuRef1394,679,228 - 94,735,067 (+)NCBIHuRef
CHM1_113114,208,391 - 114,265,115 (+)NCBICHM1_1
T2T-CHM13v2.013112,843,768 - 112,900,540 (+)NCBIT2T-CHM13v2.0
Tfdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39813,388,273 - 13,428,448 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl813,388,751 - 13,428,448 (+)EnsemblGRCm39 Ensembl
GRCm38813,338,725 - 13,378,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl813,338,751 - 13,378,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv37813,339,674 - 13,377,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36813,339,651 - 13,377,679 (+)NCBIMGSCv36mm8
Celera813,508,488 - 13,546,106 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map85.78NCBI
Tfdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955404368,793 - 408,930 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955404371,905 - 408,441 (-)NCBIChiLan1.0ChiLan1.0
TFDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v214115,092,753 - 115,152,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan113113,785,388 - 113,844,143 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01394,730,343 - 94,789,328 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113113,789,280 - 113,840,831 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13113,789,280 - 113,840,825 (+)Ensemblpanpan1.1panPan2
TFDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12260,863,541 - 60,897,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2260,870,413 - 60,896,629 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2260,581,230 - 60,608,364 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02261,554,725 - 61,581,881 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2261,539,968 - 61,581,881 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12260,993,491 - 61,020,624 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02260,995,475 - 61,022,666 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02261,026,641 - 61,053,745 (+)NCBIUU_Cfam_GSD_1.0
Tfdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945195,737,525 - 195,767,348 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936472184,786 - 214,630 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936472184,808 - 214,628 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1178,755,533 - 78,778,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11178,755,472 - 78,778,312 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21186,489,486 - 86,511,644 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TFDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1391,552,083 - 91,608,978 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl391,581,401 - 91,607,864 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604648,635,469 - 48,695,876 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624793481,687 - 515,228 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624793481,791 - 515,142 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tfdp1
174 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:512
Count of miRNA genes:238
Interacting mature miRNAs:281
Transcripts:ENSRNOT00000026150, ENSRNOT00000034274
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001025718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001436581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000026150   ⟹   ENSRNOP00000026150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,864,226 - 82,885,996 (-)Ensembl
mRatBN7.2 Ensembl1676,162,043 - 76,184,837 (-)Ensembl
Rnor_6.0 Ensembl1681,089,308 - 81,127,238 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087192   ⟹   ENSRNOP00000070337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,864,226 - 82,902,996 (-)Ensembl
mRatBN7.2 Ensembl1676,162,046 - 76,200,817 (-)Ensembl
Rnor_6.0 Ensembl1681,089,292 - 81,127,257 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096795   ⟹   ENSRNOP00000089894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1682,864,226 - 82,872,582 (-)Ensembl
mRatBN7.2 Ensembl1676,162,046 - 76,200,817 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112821   ⟹   ENSRNOP00000081778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1676,162,043 - 76,179,592 (-)Ensembl
RefSeq Acc Id: NM_001025718   ⟹   NP_001020889
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,220 - 82,902,153 (-)NCBI
mRatBN7.21676,162,040 - 76,199,974 (-)NCBI
Rnor_6.01681,089,308 - 81,127,244 (+)NCBI
Rnor_5.01680,578,421 - 80,615,804 (+)NCBI
RGSC_v3.41681,018,040 - 81,056,049 (-)RGD
Celera1673,969,240 - 74,007,155 (-)RGD
Sequence:
RefSeq Acc Id: XM_008771397   ⟹   XP_008769619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,902,872 (-)NCBI
mRatBN7.21676,162,040 - 76,200,676 (-)NCBI
Rnor_6.01681,088,642 - 81,127,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008771398   ⟹   XP_008769620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,902,951 (-)NCBI
mRatBN7.21676,162,040 - 76,200,438 (-)NCBI
Rnor_6.01681,088,844 - 81,127,241 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094676   ⟹   XP_038950604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,903,019 (-)NCBI
mRatBN7.21676,162,040 - 76,200,836 (-)NCBI
RefSeq Acc Id: XM_039094677   ⟹   XP_038950605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,903,166 (-)NCBI
mRatBN7.21676,162,040 - 76,200,871 (-)NCBI
RefSeq Acc Id: XM_039094682   ⟹   XP_038950610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,903,028 (-)NCBI
mRatBN7.21676,162,040 - 76,200,839 (-)NCBI
RefSeq Acc Id: XM_063275572   ⟹   XP_063131642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,872,582 (-)NCBI
RefSeq Acc Id: XM_063275573   ⟹   XP_063131643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81682,864,223 - 82,872,582 (-)NCBI
RefSeq Acc Id: NP_001020889   ⟸   NM_001025718
- UniProtKB: A0A8I6GIG6 (UniProtKB/TrEMBL),   A6IWH8 (UniProtKB/TrEMBL),   Q4KM53 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769619   ⟸   XM_008771397
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008769620   ⟸   XM_008771398
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000070337   ⟸   ENSRNOT00000087192
Ensembl Acc Id: ENSRNOP00000026150   ⟸   ENSRNOT00000026150
RefSeq Acc Id: XP_038950605   ⟸   XM_039094677
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950610   ⟸   XM_039094682
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950604   ⟸   XM_039094676
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000081778   ⟸   ENSRNOT00000112821
Ensembl Acc Id: ENSRNOP00000089894   ⟸   ENSRNOT00000096795
RefSeq Acc Id: XP_063131642   ⟸   XM_063275572
- Peptide Label: isoform X2
- UniProtKB: Q4KM53 (UniProtKB/TrEMBL),   A0A8I6GIG6 (UniProtKB/TrEMBL),   A6IWH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131643   ⟸   XM_063275573
- Peptide Label: isoform X2
Protein Domains
E2F/DP family winged-helix DNA-binding   Transcription factor DP C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JXN0-F1-model_v2 AlphaFold A0A0G2JXN0 1-410 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560344 AgrOrtholog
BioCyc Gene G2FUF-10720 BioCyc
Ensembl Genes ENSRNOG00000019222 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026150.6 UniProtKB/TrEMBL
  ENSRNOT00000087192 ENTREZGENE
  ENSRNOT00000087192.2 UniProtKB/TrEMBL
  ENSRNOT00000096795 ENTREZGENE
  ENSRNOT00000096795.1 UniProtKB/TrEMBL
  ENSRNOT00000112821.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  1.20.140.80 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7375514 IMAGE-MGC_LOAD
InterPro E2F-DP_heterodim UniProtKB/TrEMBL
  E2F_TDP UniProtKB/TrEMBL
  TF_DP_C_sf UniProtKB/TrEMBL
  Transc_factor_DP_C UniProtKB/TrEMBL
  Transcrpt_fac_DP UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:361178 UniProtKB/TrEMBL
MGC_CLONE MGC:112830 IMAGE-MGC_LOAD
NCBI Gene 361178 ENTREZGENE
PANTHER PTHR12548 UniProtKB/TrEMBL
  PTHR12548:SF4 UniProtKB/TrEMBL
Pfam E2F_TDP UniProtKB/TrEMBL
  PF08781 UniProtKB/TrEMBL
PhenoGen Tfdp1 PhenoGen
PIRSF Transcription_factor_DP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019222 RatGTEx
SMART E2F_TDP UniProtKB/TrEMBL
  SM01138 UniProtKB/TrEMBL
Superfamily-SCOP SSF144074 UniProtKB/TrEMBL
  SSF46785 UniProtKB/TrEMBL
UniProt A0A0G2JXN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZT84_RAT UniProtKB/TrEMBL
  A0A8I6GIG6 ENTREZGENE, UniProtKB/TrEMBL
  A6IWH7 ENTREZGENE, UniProtKB/TrEMBL
  A6IWH8 ENTREZGENE, UniProtKB/TrEMBL
  G3V8H9 ENTREZGENE, UniProtKB/TrEMBL
  Q4KM53 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-15 Tfdp1  transcription factor Dp-1  MGC112830  similar to transcription factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 MGC112830  similar to transcription factor      Symbol and Name status set to provisional 70820 PROVISIONAL