Rai2 (retinoic acid induced 2) - Rat Genome Database

Name: Rai2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rai2 (retinoic acid induced 2) Rattus norvegicus

Analyze

Symbol:

Rai2

Name:

retinoic acid induced 2

RGD ID:

1560139

Description:

Predicted to be involved in animal organ development. Predicted to be active in nucleus. Orthologous to human RAI2 (retinoic acid induced 2); INTERACTS WITH 6-propyl-2-thiouracil; acetamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC501555; retinoic acid-induced protein 2; RGD1560139; similar to Retinoic acid induced 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAI2 (retinoic acid induced 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rai2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rai2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAI2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAI2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rai2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAI2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAI2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rai2 (retinoic acid induced 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RAI2 (retinoic acid induced 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rai2 (retinoic acid induced 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-161f7.2	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	rai2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	36,580,406 - 36,642,943 (-)	NCBI		GRCr8
mRatBN7.2	X	32,948,656 - 33,011,222 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	32,948,656 - 33,011,264 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	33,975,467 - 34,037,926 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	37,418,092 - 37,480,601 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	33,600,431 - 33,662,895 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	34,731,891 - 34,794,589 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	34,731,891 - 34,794,589 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	35,074,629 - 35,135,655 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	53,778,991 - 53,810,359 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	33,239,204 - 33,298,772 (-)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Coffin-Lowry syndrome (ISO)

developmental and epileptic encephalopathy 2 (ISO)

dextrocardia (ISO)

genetic disease (ISO)

glycogen storage disease IXA (ISO)

Nance-Horan syndrome (ISO)

Neurodevelopmental Disorders (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chrysene (ISO)

clofibrate (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

gentamycin (EXP)

indometacin (ISO)

mercury dibromide (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ development (IBA)

Cellular Component

nucleus (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Rai2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	36,580,406 - 36,642,943 (-)	NCBI		GRCr8
mRatBN7.2	X	32,948,656 - 33,011,222 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	32,948,656 - 33,011,264 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	33,975,467 - 34,037,926 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	37,418,092 - 37,480,601 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	33,600,431 - 33,662,895 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	34,731,891 - 34,794,589 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	34,731,891 - 34,794,589 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	35,074,629 - 35,135,655 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	53,778,991 - 53,810,359 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	33,239,204 - 33,298,772 (-)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

RAI2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	17,800,049 - 17,861,298 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	17,800,049 - 17,861,337 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	17,818,169 - 17,879,418 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	17,728,092 - 17,730,428 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	17,577,827 - 17,580,164	NCBI
Celera	X	21,937,489 - 21,998,776 (-)	NCBI		Celera
Cytogenetic Map	X	p22.13	NCBI
HuRef	X	15,576,074 - 15,613,134 (-)	NCBI		HuRef
CHM1_1	X	17,848,557 - 17,909,841 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	17,382,656 - 17,443,905 (-)	NCBI		T2T-CHM13v2.0

Rai2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	160,500,032 - 160,562,490 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	160,500,065 - 160,562,492 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	161,717,036 - 161,779,494 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	161,717,069 - 161,779,496 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	158,154,968 - 158,217,426 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	157,061,732 - 157,123,598 (+)	NCBI		MGSCv36	mm8
Celera	X	144,950,885 - 145,013,085 (+)	NCBI		Celera
Cytogenetic Map	X	F4	NCBI
cM Map	X	74.07	NCBI

Rai2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955519	494,463 - 553,839 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955519	494,463 - 553,839 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAI2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	19,598,224 - 19,659,714 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	19,601,616 - 19,663,121 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	10,423,258 - 10,484,740 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	17,791,701 - 17,936,223 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

RAI2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	13,871,795 - 14,021,908 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	13,723,958 - 14,112,454 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	13,835,556 - 14,224,728 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	13,835,557 - 13,895,871 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	13,902,081 - 14,290,629 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	13,888,388 - 14,277,215 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	13,958,049 - 14,346,972 (-)	NCBI		UU_Cfam_GSD_1.0

Rai2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	7,011,228 - 7,084,787 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	7,016,665 - 7,018,254 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	7,016,293 - 7,084,787 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAI2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	14,244,317 - 14,309,143 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	14,246,776 - 14,633,071 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	15,343,447 - 15,545,694 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAI2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	16,250,538 - 16,312,788 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	16,250,911 - 16,252,503 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	18,111,971 - 18,173,806 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rai2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	2,568,763 - 2,633,780 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624829	2,568,865 - 2,634,268 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rai2
264 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	426
Count of miRNA genes:	232
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000008703
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat

Markers in Region

DXRat42

Rat Assembly	Chr	Position (strand)	Source
Celera	X	33,298,885 - 33,299,123	UniSTS
RH 3.4 Map	X	481.6	RGD
RH 3.4 Map	X	481.6	UniSTS
RH 2.0 Map	21	377.1	RGD
SHRSP x BN Map	X	12.6999	RGD
FHH x ACI Map	X	14.59	RGD
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			2					3	25		13	3
Low	3	43	33	20	18	20	8	8	49	35	28	8	8
Below cutoff			22	21	1	21

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008703 ⟹ ENSRNOP00000008703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	32,948,656 - 33,011,167 (-)	Ensembl
Rnor_6.0 Ensembl	X	34,731,891 - 34,794,589 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102368 ⟹ ENSRNOP00000096897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	32,949,066 - 33,011,264 (-)	Ensembl

RefSeq Acc Id:

NM_001109316 ⟹ NP_001102786

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,406 - 36,642,896 (-)	NCBI
mRatBN7.2	X	32,948,656 - 33,011,167 (-)	NCBI
Rnor_6.0	X	34,731,891 - 34,794,589 (-)	NCBI
Rnor_5.0	X	35,074,629 - 35,135,655 (-)	NCBI
RGSC_v3.4	X	53,778,991 - 53,810,359 (-)	RGD
Celera	X	33,239,204 - 33,298,772 (-)	RGD

Sequence:

show sequence

CGGACACAGGCACACACGCGCACAGACACAGTCGGCAGTGGCGGCCAGCGACAGCGGCTGGGTG
ACAGCAAAGACAGAGGCTCCCATCGCTGTGCACCCCCTTCAGGCGCCCAGCGGCGAGGCCAGAC
CAAGAGAGTTCCCACACCAACGTCCACCCCGTGGCTTCCTGGAGGCGGCAGCCCGGATCCCGAG
GCCACGTGGCACCGGAGCCAAGTGATGGATGACCTGCAGTCCCAGAACCTTTCAATGGACATGA
CTGATTCCCCTCCCACTTTGGCTAATAACAGACTGGAGAACGGCATGGCCCAGCTGATAACTAC
CGAGGCCTGGAACATCAACTCCACTGACCTGGTAAAGAAGGCCCTGGTGACCGTGCCTGCCCCA
TCAATTCTGAACCCCCCAGCTGAGTCACAGAGTGGCATGGCTCTGAAGGTAGCAGCCACCGTGC
TGCAGCCCCTGTGCCTTGGGGAAAGCCCAGTGGTGATGCCCATTCACATGCAGGTGGAGGGAAG
CTCTGCGCCAGAACTCAACCCCAACGGCAATGCTACCTACGTTATGACGACACAAGGCCCCGTG
CAGTTACCGGTGGTGTTGGAACAGCATGTTTTCCAGCATCTCAACTCCCCTCTAGTCCTGCCTC
AGGAGGCCCCGTGCTCCTCCAATGCTATCCACAACAATCTCTTCCAGGGGGCTGAGGACTCTGA
GGCCCAACCTCAGCTCCTGGACCTGAGGATTCCAAGTCAACCACAGGAGCCTACGTTGCCTTTT
GAAGCTGTGCTCCAGAATTTATTCCCCACCCAAGGCTCTTTGGGCCCTCCACCCTGCCAGCCTC
CTCCTGGCTATGCTCCAGTGCCTCCCCAGCCCTTTAGCTCCCCCTTGTCTCCCCTAGTCCCACC
AGCTACCCTCTTGGTGCCCTATCCCGTGATTGTCCCCTTGCCAGTTCCAGTGCCCATTCCCATC
CCTGTCCCAGTGCCTCAGAGTTCTGAATCTAAGTTCAGCCCCAGTTTCCCCAAGCCACCATCTT
CCTTCGGCCTGCACTCCTTTAAAGGTACTCAGACCACTCTGGAAAAGGATGAACTGAAGCCCTT
AGACATCCTCCAGCCAAAGGAGTATTTCCAGCTCAGCCGCCACACAGTTATCAAGATGGGGGGT
GAGAATGAGGCCCTGGATCTGTCCATGAAGTCAGTGCCCTGGCTCAAGGCTGGGGAAGCAAGCC
CCCCAGTCTTTCAAGAGGACGCGGCCCTGGATCTGTCTTTGGCAGCCCACCGAAAAGCTGAGGT
TCCTCCAGAGACATTGTATAACACCAGTGGGTCAGCAGATATTCAGGGTCACACCCTGCTGGAG
AAACGTCCCAGTGGCATGGAAATGCCCTTTGCCCCGGCCAAGTCTCGTGAGGCCTCAGCCATGA
TGGATAGTCACAGCAGCAGCAGCAATGGCACCGAGATGGTCAGCCAGCCCATCCACCCTGGCAG
TGAGTTAAAGCCTGAAAATAACATTGAGATCGTAAGTGAGTCTCAGGCAGCCAAGGTCATTGTG
TCAGTTGAAGACGCTGTGCCTGCCATCTTCTGTGGCAAGATTAAAGGCCTCTCAGGGGTATCCA
CCAAAAACTTCTCCTTCAAAAGAGAAGACTCTGTGCTTCAGGGTTATGACATCAACAGCCAAGA
AGACGAGTCCCTGGGAAACACCGAGCCTCTTAGGAAACCCATCAAAAATCGGAGCATAAAGTTA
AAGAAAGTGAACTCCCAGGAAATACACATGCTCCCAATTAAAAAACAACGGCTGGCCACCTTTT
TCCCAAGAAAGTAAATAAGGGCTTTAAAACATTTTTATGATTATGATGTGGGGAAAGGTGCATT
GTTTTTTTTTAAAGGCATCTAAAACAAATTATCTTTGTTAATTATTTTGGGGCATAGGTGGGAG
CAGAAAGGCAAATTAGCTAGTATCATTTTCTTTTTTAATTTTTGACTTTTCACAAATGAGTAAA
TAAGAGCAACCTATTTTTCAAGCAGATTGCACATTTTTTTGCAGCTTTAATGGAATATTGGGTG
AATCAGAGGGGTGAGAGCTATTTTCATTGCCACAAAGTGCTTTGATGATGTAATACCTAATAAA
GGGTAGGATGACTATTTCACAATAAATGTTTGTTTGCACTAATTGGTTGCAGTATTCTGTCATT
TGTAAAATTTACATTTCTCAACTGGCGTGGTTGGCCTACACTTTTGCTTGTAAAGAGCTCTAAT
TTATTACTATTTAGAGACCTAAGCTCTTCAGGCATGTTGGGAAATACTGCCTTGCGCCTCAGAG
GAGGAGGATTCAGGGTATGTATGGTCTCTAACAAATCACTTTTCCCTCTGGGCCTTGGTTGGGT
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTTTTATCTCAATGTGGCAAAGGCCCAGGGAGGGGGCAGAAATGTGAGTCTCAAGTACTCAAG
GCCTCTCTCAGGTCACTCAGTTCTTGACTGTGTTTAGTTTTTTTTTTTTTCTTGGACTTCTCCA
TGCT

hide sequence

RefSeq Acc Id:

XM_039099966 ⟹ XP_038955894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,816 - 36,642,942 (-)	NCBI
mRatBN7.2	X	32,949,066 - 33,011,222 (-)	NCBI

RefSeq Acc Id:

XM_063280244 ⟹ XP_063136314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,816 - 36,642,943 (-)	NCBI

RefSeq Acc Id:

XM_063280245 ⟹ XP_063136315

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,816 - 36,642,505 (-)	NCBI

RefSeq Acc Id:

XM_063280246 ⟹ XP_063136316

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,816 - 36,642,943 (-)	NCBI

RefSeq Acc Id:

XM_063280247 ⟹ XP_063136317

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,816 - 36,642,943 (-)	NCBI

RefSeq Acc Id:

XM_063280248 ⟹ XP_063136318

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	36,580,816 - 36,642,943 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102786	(Get FASTA)	NCBI Sequence Viewer
	XP_038955894	(Get FASTA)	NCBI Sequence Viewer
	XP_063136314	(Get FASTA)	NCBI Sequence Viewer
	XP_063136315	(Get FASTA)	NCBI Sequence Viewer
	XP_063136316	(Get FASTA)	NCBI Sequence Viewer
	XP_063136317	(Get FASTA)	NCBI Sequence Viewer
	XP_063136318	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90483	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008703
	ENSRNOP00000008703.1
	ENSRNOP00000096897
	ENSRNOP00000096897.1

RefSeq Acc Id:

NP_001102786 ⟸ NM_001109316

- UniProtKB:

D3ZGZ4 (UniProtKB/TrEMBL), A6K2P7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDDLQSQNLSMDMTDSPPTLANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILNPPAE
SQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPVQLPVVLEQ
HVFQHLNSPLVLPQEAPCSSNAIHNNLFQGAEDSEAQPQLLDLRIPSQPQEPTLPFEAVLQNLF
PTQGSLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPLPVPVPIPIPVPVPQSS
ESKFSPSFPKPPSSFGLHSFKGTQTTLEKDELKPLDILQPKEYFQLSRHTVIKMGGENEALDLS
MKSVPWLKAGEASPPVFQEDAALDLSLAAHRKAEVPPETLYNTSGSADIQGHTLLEKRPSGMEM
PFAPAKSREASAMMDSHSSSSNGTEMVSQPIHPGSELKPENNIEIVSESQAAKVIVSVEDAVPA
IFCGKIKGLSGVSTKNFSFKREDSVLQGYDINSQEDESLGNTEPLRKPIKNRSIKLKKVNSQEI
HMLPIKKQRLATFFPRK

hide sequence

RefSeq Acc Id:

ENSRNOP00000008703 ⟸ ENSRNOT00000008703

RefSeq Acc Id:	XP_038955894 ⟸ XM_039099966
- Peptide Label:	isoform X1
- UniProtKB:	D3ZGZ4 (UniProtKB/TrEMBL), A6K2P7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000096897 ⟸ ENSRNOT00000102368

RefSeq Acc Id:	XP_063136318 ⟸ XM_063280248
- Peptide Label:	isoform X1
- UniProtKB:	A6K2P7 (UniProtKB/TrEMBL), D3ZGZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136317 ⟸ XM_063280247
- Peptide Label:	isoform X1
- UniProtKB:	A6K2P7 (UniProtKB/TrEMBL), D3ZGZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136316 ⟸ XM_063280246
- Peptide Label:	isoform X1
- UniProtKB:	A6K2P7 (UniProtKB/TrEMBL), D3ZGZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136314 ⟸ XM_063280244
- Peptide Label:	isoform X1
- UniProtKB:	A6K2P7 (UniProtKB/TrEMBL), D3ZGZ4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136315 ⟸ XM_063280245
- Peptide Label:	isoform X1
- UniProtKB:	A6K2P7 (UniProtKB/TrEMBL), D3ZGZ4 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZGZ4-F1-model_v2	AlphaFold	D3ZGZ4	1-529	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701808

Promoter ID:

EPDNEW_R12332

Type:

single initiation site

Name:

Rai2_1

Description:

retinoic acid induced 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	34,794,599 - 34,794,659	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560139	AgrOrtholog
BioCyc Gene	G2FUF-2515	BioCyc
Ensembl Genes	ENSRNOG00000006670	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008703	ENTREZGENE
	ENSRNOT00000008703.4	UniProtKB/TrEMBL
	ENSRNOT00000102368.1	UniProtKB/TrEMBL
InterPro	RAI2/SOBP	UniProtKB/TrEMBL
KEGG Report	rno:501555	UniProtKB/TrEMBL
NCBI Gene	501555	ENTREZGENE
PANTHER	PTHR23186	UniProtKB/TrEMBL
	RETINOIC ACID-INDUCED PROTEIN 2	UniProtKB/TrEMBL
Pfam	SOBP	UniProtKB/TrEMBL
PhenoGen	Rai2	PhenoGen
RatGTEx	ENSRNOG00000006670	RatGTEx
UniProt	A6K2P7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZGZ4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-28	Rai2	retinoic acid induced 2	RGD1560139_predicted	similar to Retinoic acid induced 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560139_predicted	similar to Retinoic acid induced 2 (predicted)	LOC501555	similar to Retinoic acid induced 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501555	similar to Retinoic acid induced 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar