Fam216b (family with sequence similarity 216, member B) - Rat Genome Database

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Gene: Fam216b (family with sequence similarity 216, member B) Rattus norvegicus
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Symbol: Fam216b
Name: family with sequence similarity 216, member B
RGD ID: 1560137
Description: Orthologous to human FAM216B (family with sequence similarity 216 member B); INTERACTS WITH bisphenol A; Cuprizon; rotenone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC290372; RGD1560137; similar to expressed sequence AU021034
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81559,878,665 - 59,905,887 (-)NCBIGRCr8
mRatBN7.21553,469,495 - 53,482,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1553,469,599 - 53,482,398 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01560,276,530 - 60,303,880 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1560,277,100 - 60,289,763 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01563,952,512 - 63,977,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41559,176,218 - 59,189,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1553,065,007 - 53,093,028 (-)NCBICelera
Cytogenetic Map15q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548  


Genomics

Comparative Map Data
Fam216b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81559,878,665 - 59,905,887 (-)NCBIGRCr8
mRatBN7.21553,469,495 - 53,482,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1553,469,599 - 53,482,398 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01560,276,530 - 60,303,880 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1560,277,100 - 60,289,763 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01563,952,512 - 63,977,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41559,176,218 - 59,189,871 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1553,065,007 - 53,093,028 (-)NCBICelera
Cytogenetic Map15q11NCBI
FAM216B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381342,781,584 - 42,791,549 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1342,781,550 - 42,791,549 (+)EnsemblGRCh38hg38GRCh38
GRCh371343,355,720 - 43,365,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361342,253,751 - 42,263,683 (+)NCBINCBI36Build 36hg18NCBI36
Celera1324,413,479 - 24,423,481 (+)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1324,159,497 - 24,169,506 (+)NCBIHuRef
CHM1_11343,323,249 - 43,333,247 (+)NCBICHM1_1
T2T-CHM13v2.01342,001,615 - 42,011,583 (+)NCBIT2T-CHM13v2.0
Fam216b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391478,318,464 - 78,326,447 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1478,318,461 - 78,326,447 (-)EnsemblGRCm39 Ensembl
GRCm381478,081,024 - 78,089,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1478,081,021 - 78,089,007 (-)EnsemblGRCm38mm10GRCm38
MGSCv371478,480,831 - 78,488,814 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361476,815,179 - 76,823,162 (-)NCBIMGSCv36mm8
Celera1475,599,610 - 75,607,598 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1441.15NCBI
Fam216b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955518676,141 - 695,316 (+)NCBIChiLan1.0ChiLan1.0
FAM216B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21442,268,908 - 42,276,335 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11333,372,568 - 33,382,562 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01323,953,749 - 23,963,749 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAM216B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1228,054,212 - 8,122,444 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl228,047,223 - 8,075,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha228,046,396 - 8,114,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0228,259,238 - 8,333,359 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl228,252,542 - 8,266,718 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1227,964,918 - 8,032,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,021,883 - 8,089,802 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0228,032,442 - 8,100,678 (-)NCBIUU_Cfam_GSD_1.0
FAM216B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1124,312,395 - 24,321,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11124,312,382 - 24,321,943 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,964,580 - 24,972,916 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM216B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1320,925,040 - 20,931,883 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605723,274,343 - 23,281,730 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam216b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474812,351,968 - 12,359,401 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474812,352,641 - 12,359,397 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam216b
87 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:127
Interacting mature miRNAs:141
Transcripts:ENSRNOT00000038579
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 2 1
Low 25 50 12 11
Below cutoff 8 2 1 2 1 4 4 12 7 4

Sequence


RefSeq Acc Id: ENSRNOT00000038579   ⟹   ENSRNOP00000038650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1553,469,599 - 53,482,398 (-)Ensembl
Rnor_6.0 Ensembl1560,277,100 - 60,289,763 (-)Ensembl
RefSeq Acc Id: NM_001420149   ⟹   NP_001407078
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81559,878,665 - 59,891,555 (-)NCBI
mRatBN7.21553,469,495 - 53,482,385 (-)NCBI
RefSeq Acc Id: XM_063274154   ⟹   XP_063130224
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81559,878,670 - 59,905,885 (-)NCBI
RefSeq Acc Id: XM_063274156   ⟹   XP_063130226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81559,878,670 - 59,905,887 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001407078 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130224 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130226 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038650.6
RefSeq Acc Id: ENSRNOP00000038650   ⟸   ENSRNOT00000038579
RefSeq Acc Id: NP_001407078   ⟸   NM_001420149
- UniProtKB: A6HTX2 (UniProtKB/TrEMBL),   D4A1P0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130226   ⟸   XM_063274156
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063130224   ⟸   XM_063274154
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A1P0-F1-model_v2 AlphaFold D4A1P0 1-123 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560137 AgrOrtholog
BioCyc Gene G2FUF-13018 BioCyc
Ensembl Genes ENSRNOG00000021943 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038579.6 UniProtKB/TrEMBL
InterPro FAM216 UniProtKB/TrEMBL
NCBI Gene 290372 ENTREZGENE
PANTHER PROTEIN FAM216B UniProtKB/TrEMBL
  PTHR16476 UniProtKB/TrEMBL
Pfam FAM216B UniProtKB/TrEMBL
PhenoGen Fam216b PhenoGen
RatGTEx ENSRNOG00000021943 RatGTEx
UniProt A6HTX2 ENTREZGENE, UniProtKB/TrEMBL
  D4A1P0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Fam216b  family with sequence similarity 216, member B  RGD1560137  similar to expressed sequence AU021034  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560137  similar to expressed sequence AU021034   RGD1560137_predicted  similar to expressed sequence AU021034 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560137_predicted  similar to expressed sequence AU021034 (predicted)  LOC290372  similar to expressed sequence AU021034  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC290372  similar to expressed sequence AU021034      Symbol and Name status set to provisional 70820 PROVISIONAL