Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Vps37a | Rat | hereditary spastic paraplegia 53 | | ISO | VPS37A (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Vps37a | Rat | hereditary spastic paraplegia 53 | | ISO | VPS37A (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
3. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Vps37a (Rattus norvegicus - Norway rat) |
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VPS37A (Homo sapiens - human) |
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Vps37a (Mus musculus - house mouse) |
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Vps37a (Chinchilla lanigera - long-tailed chinchilla) |
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VPS37A (Pan paniscus - bonobo/pygmy chimpanzee) |
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VPS37A (Canis lupus familiaris - dog) |
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Vps37a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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VPS37A (Sus scrofa - pig) |
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VPS37A (Chlorocebus sabaeus - green monkey) |
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Vps37a (Heterocephalus glaber - naked mole-rat) |
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Variants in Vps37a
139 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D16Got55 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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nervous system
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renal system
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reproductive system
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respiratory system
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9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001024867 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008771289 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039094386 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063275235 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063275236 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_596484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC111946 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC098069 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473995 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ232149 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000016321 ⟹ ENSRNOP00000016321 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000093996 ⟹ ENSRNOP00000085018 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001024867 ⟹ NP_001020038 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008771289 ⟹ XP_008769511 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039094386 ⟹ XP_038950314 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063275235 ⟹ XP_063131305 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063275236 ⟹ XP_063131306 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XR_596484 | ||||||||||||||||
Type: | NON-CODING | ||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001020038 | (Get FASTA) | NCBI Sequence Viewer |
XP_008769511 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038950314 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063131305 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063131306 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH98069 | (Get FASTA) | NCBI Sequence Viewer |
EDL78816 | (Get FASTA) | NCBI Sequence Viewer | |
EDL78817 | (Get FASTA) | NCBI Sequence Viewer | |
EDL78818 | (Get FASTA) | NCBI Sequence Viewer | |
EDL78819 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000016321.5 | ||
ENSRNOP00000085018.1 |
RefSeq Acc Id: | NP_001020038 ⟸ NM_001024867 |
- UniProtKB: | Q4V794 (UniProtKB/TrEMBL), A6JPV3 (UniProtKB/TrEMBL), F7FHB3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008769511 ⟸ XM_008771289 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6GCD4 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000016321 ⟸ ENSRNOT00000016321 |
RefSeq Acc Id: | XP_038950314 ⟸ XM_039094386 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A6JPV5 (UniProtKB/TrEMBL) |
Ensembl Acc Id: | ENSRNOP00000085018 ⟸ ENSRNOT00000093996 |
RefSeq Acc Id: | XP_063131306 ⟸ XM_063275236 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6GCD4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063131305 ⟸ XM_063275235 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6JPV3 (UniProtKB/TrEMBL), F7FHB3 (UniProtKB/TrEMBL), Q4V794 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q4V794-F1-model_v2 | AlphaFold | Q4V794 | 1-398 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13700122 | ||||||||
Promoter ID: | EPDNEW_R10646 | ||||||||
Type: | initiation region | ||||||||
Name: | Vps37a_1 | ||||||||
Description: | VPS37A, ESCRT-I subunit | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1560016 | AgrOrtholog |
BioCyc Gene | G2FUF-11244 | BioCyc |
Ensembl Genes | ENSRNOG00000012001 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000016321.6 | UniProtKB/TrEMBL |
ENSRNOT00000093996.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.287.660 | UniProtKB/TrEMBL |
3.10.110.10 | UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7444656 | IMAGE-MGC_LOAD |
InterPro | ESCRT_assembly_dom | UniProtKB/TrEMBL |
Helix_hairpin_bin_sf | UniProtKB/TrEMBL | |
Mod_r | UniProtKB/TrEMBL | |
UBQ-conjugat/RWD-like | UniProtKB/TrEMBL | |
KEGG Report | rno:290775 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:116266 | IMAGE-MGC_LOAD |
NCBI Gene | 290775 | ENTREZGENE |
PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 | UniProtKB/TrEMBL |
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37A | UniProtKB/TrEMBL | |
Pfam | Mod_r | UniProtKB/TrEMBL |
PhenoGen | Vps37a | PhenoGen |
PROSITE | VPS37_C | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000012001 | RatGTEx |
Superfamily-SCOP | SSF140111 | UniProtKB/TrEMBL |
UBQ-conjugat/RWD-like | UniProtKB/TrEMBL | |
UniProt | A0A8I6GCD4 | ENTREZGENE, UniProtKB/TrEMBL |
A6JPV3 | ENTREZGENE, UniProtKB/TrEMBL | |
A6JPV5 | ENTREZGENE, UniProtKB/TrEMBL | |
F7FHB3 | ENTREZGENE, UniProtKB/TrEMBL | |
Q4V794 | ENTREZGENE | |
UniProt Secondary | Q4V794 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2019-04-02 | Vps37a | VPS37A subunit of ESCRT-I | Vps37a | VPS37A, ESCRT-I subunit | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2016-03-08 | Vps37a | VPS37A, ESCRT-I subunit | Vps37a | vacuolar protein sorting 37 homolog A (S. cerevisiae) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-11 | Vps37a | vacuolar protein sorting 37 homolog A (S. cerevisiae) | Vps37a | vacuolar protein sorting 37A (S. cerevisiae) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-06 | Vps37a | vacuolar protein sorting 37A (S. cerevisiae) | MGC116266 | similar to DNA segment, Chr 8, ERATO Doi 531, expressed | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-02-09 | MGC116266 | similar to DNA segment, Chr 8, ERATO Doi 531, expressed | Symbol and Name status set to provisional | 70820 | PROVISIONAL |