Tango6 (transport and golgi organization 6 homolog) - Rat Genome Database

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Gene: Tango6 (transport and golgi organization 6 homolog) Rattus norvegicus
Analyze
Symbol: Tango6
Name: transport and golgi organization 6 homolog
RGD ID: 1559841
Description: Predicted to be involved in protein secretion. Orthologous to human TANGO6 (transport and golgi organization 6 homolog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC679858; LOC307816; RGD1559841; similar to expressed sequence AW413431; transport and golgi organization 6 homolog (Drosophila); transport and Golgi organization protein 6 homolog; uncharacterized protein LOC307816
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,479,384 - 51,667,142 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1951,479,391 - 51,687,621 (+)EnsemblGRCr8
mRatBN7.21934,569,588 - 34,757,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,569,635 - 34,754,639 (+)EnsemblmRatBN7.2
Rnor_6.01938,846,204 - 39,052,940 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,846,201 - 39,049,943 (+)Ensemblrn6Rnor6.0
Rnor_5.01949,713,592 - 49,917,224 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41936,520,052 - 36,704,369 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1933,996,119 - 34,181,428 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tango6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,479,384 - 51,667,142 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1951,479,391 - 51,687,621 (+)EnsemblGRCr8
mRatBN7.21934,569,588 - 34,757,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,569,635 - 34,754,639 (+)EnsemblmRatBN7.2
Rnor_6.01938,846,204 - 39,052,940 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,846,201 - 39,049,943 (+)Ensemblrn6Rnor6.0
Rnor_5.01949,713,592 - 49,917,224 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41936,520,052 - 36,704,369 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1933,996,119 - 34,181,428 (+)NCBICelera
Cytogenetic Map19q12NCBI
TANGO6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381668,843,531 - 69,085,182 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1668,843,531 - 69,085,182 (+)Ensemblhg38GRCh38
GRCh371668,877,434 - 69,119,085 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,435,010 - 67,676,586 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1653,386,815 - 53,628,410 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1654,750,815 - 54,991,775 (+)NCBIHuRef
CHM1_11670,285,662 - 70,527,161 (+)NCBICHM1_1
T2T-CHM13v2.01674,639,794 - 74,881,499 (+)NCBIT2T-CHM13v2.0
Tango6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,409,697 - 107,581,175 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,409,700 - 107,578,071 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388106,683,068 - 106,851,439 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,683,068 - 106,851,439 (+)Ensemblmm10GRCm38
MGSCv378109,206,968 - 109,375,339 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368109,572,197 - 109,740,568 (+)NCBIMGSCv36mm8
Celera8110,902,788 - 111,077,408 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.18NCBI
Tango6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,570,804 - 7,774,818 (-)Ensembl
ChiLan1.0NW_0049554847,574,194 - 7,774,802 (-)NCBIChiLan1.0ChiLan1.0
TANGO6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,384,727 - 78,626,854 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,296,057 - 84,538,160 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,214,359 - 49,456,454 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11668,605,597 - 68,844,467 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,605,597 - 68,844,467 (+)EnsemblpanPan2panpan1.1
TANGO6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,548,809 - 80,748,408 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,532,865 - 80,748,563 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha580,538,658 - 80,739,056 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0580,982,214 - 81,182,948 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl580,982,217 - 81,183,004 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1580,809,403 - 81,010,051 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,491,951 - 80,693,207 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0581,131,891 - 81,332,776 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tango6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,338,463 - 40,516,654 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647519,072,539 - 19,250,428 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647519,072,480 - 19,250,768 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TANGO6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl617,869,929 - 18,071,522 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1617,870,050 - 18,071,555 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TANGO6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,326,128 - 58,570,184 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,323,925 - 58,570,165 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604721,055,051 - 21,306,424 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tango6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,254,573 - 17,476,097 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474617,257,788 - 17,476,029 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tango6
1255 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:138
Interacting mature miRNAs:148
Transcripts:ENSRNOT00000030768, ENSRNOT00000063977
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19799775052997750Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)191922068964220689Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19799775052997750Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19799775052997750Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19799775052997750Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
1354607Gmadr1Adrenal mass QTL 15.83adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)194072709254856850Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)192010930665109306Rat
1354600Salc2Saline consumption QTL 29.910.001drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)194072709254856850Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat
1354633Bw28Body weight QTL 286.04body mass (VT:0001259)body weight (CMO:0000012)194072709254856850Rat

Markers in Region
D19Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,674,428 - 34,674,557 (+)MAPPERmRatBN7.2
Rnor_6.01938,969,450 - 38,969,578NCBIRnor6.0
Rnor_5.01949,834,041 - 49,834,169UniSTSRnor5.0
RGSC_v3.41936,614,365 - 36,614,601RGDRGSC3.4
RGSC_v3.41936,614,384 - 36,614,512UniSTSRGSC3.4
Celera1934,099,651 - 34,099,779UniSTS
RGSC_v3.11936,619,265 - 36,619,393RGD
RH 3.4 Map19287.3RGD
RH 3.4 Map19287.3UniSTS
RH 2.0 Map19403.3RGD
FHH x ACI Map1929.1799RGD
Cytogenetic Map19q12UniSTS
D19Rat118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,584,158 - 34,584,401 (+)MAPPERmRatBN7.2
Rnor_6.01938,860,615 - 38,860,857NCBIRnor6.0
Rnor_5.01949,727,853 - 49,728,095UniSTSRnor5.0
RGSC_v3.41936,535,127 - 36,535,368RGDRGSC3.4
RGSC_v3.41936,535,126 - 36,535,368UniSTSRGSC3.4
Celera1934,010,177 - 34,010,418UniSTS
RGSC_v3.11936,540,008 - 36,540,249RGD
FHH x ACI Map1929.1799RGD
FHH x ACI Map1929.1799UniSTS
Cytogenetic Map19q12UniSTS
D19Got26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,593,708 - 34,593,854 (+)MAPPERmRatBN7.2
Rnor_6.01938,876,498 - 38,876,643NCBIRnor6.0
Rnor_5.01949,744,519 - 49,744,664UniSTSRnor5.0
Celera1934,019,736 - 34,019,881UniSTS
RH 3.4 Map19314.5RGD
RH 3.4 Map19314.5UniSTS
RH 2.0 Map19419.8RGD
Cytogenetic Map19q12UniSTS
D19Got23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,646,903 - 34,647,061 (+)MAPPERmRatBN7.2
Rnor_6.01938,931,500 - 38,931,657NCBIRnor6.0
Rnor_5.01949,796,091 - 49,796,248UniSTSRnor5.0
RGSC_v3.41936,586,706 - 36,586,864RGDRGSC3.4
RGSC_v3.41936,586,707 - 36,586,864UniSTSRGSC3.4
Celera1934,072,119 - 34,072,276UniSTS
RGSC_v3.11936,591,588 - 36,591,745RGD
RH 3.4 Map19293.5UniSTS
RH 3.4 Map19293.5RGD
RH 2.0 Map19420.6RGD
Cytogenetic Map19q12UniSTS
RH131501  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21934,754,371 - 34,754,565 (+)MAPPERmRatBN7.2
Rnor_6.01939,049,950 - 39,050,143NCBIRnor6.0
Rnor_5.01949,914,234 - 49,914,427UniSTSRnor5.0
RGSC_v3.41936,704,102 - 36,704,295UniSTSRGSC3.4
Celera1934,178,438 - 34,178,631UniSTS
RH 3.4 Map19316.2UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000030768   ⟹   ENSRNOP00000033600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,391 - 51,630,244 (+)Ensembl
mRatBN7.2 Ensembl1934,569,635 - 34,754,639 (+)Ensembl
Rnor_6.0 Ensembl1938,846,201 - 39,049,943 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000063977   ⟹   ENSRNOP00000059040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,391 - 51,682,759 (+)Ensembl
mRatBN7.2 Ensembl1934,569,635 - 34,754,639 (+)Ensembl
Rnor_6.0 Ensembl1938,846,288 - 38,925,141 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081116   ⟹   ENSRNOP00000070661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,391 - 51,687,621 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104052   ⟹   ENSRNOP00000096165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,395 - 51,667,133 (+)Ensembl
mRatBN7.2 Ensembl1934,569,635 - 34,595,867 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138119   ⟹   ENSRNOP00000099556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,395 - 51,667,133 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156495   ⟹   ENSRNOP00000103388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,395 - 51,667,133 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000165430   ⟹   ENSRNOP00000101745
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,395 - 51,667,133 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000170707   ⟹   ENSRNOP00000109114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,395 - 51,667,133 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000170748   ⟹   ENSRNOP00000111688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1951,479,395 - 51,667,133 (+)Ensembl
RefSeq Acc Id: NM_001427103   ⟹   NP_001414032
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,479,395 - 51,667,133 (+)NCBI
RefSeq Acc Id: XM_006255568   ⟹   XP_006255630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,479,384 - 51,667,142 (+)NCBI
mRatBN7.21934,569,588 - 34,757,362 (+)NCBI
Rnor_6.01938,846,204 - 39,052,940 (+)NCBI
Rnor_5.01949,713,592 - 49,917,224 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098139   ⟹   XP_038954067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,479,384 - 51,540,755 (+)NCBI
mRatBN7.21934,569,588 - 34,630,875 (+)NCBI
RefSeq Acc Id: XM_063278042   ⟹   XP_063134112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81951,479,384 - 51,667,142 (+)NCBI
RefSeq Acc Id: XP_006255630   ⟸   XM_006255568
- Peptide Label: isoform X2
- UniProtKB: D4A9F1 (UniProtKB/TrEMBL),   A6IYX6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059040   ⟸   ENSRNOT00000063977
Ensembl Acc Id: ENSRNOP00000033600   ⟸   ENSRNOT00000030768
RefSeq Acc Id: XP_038954067   ⟸   XM_039098139
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000096165   ⟸   ENSRNOT00000104052
RefSeq Acc Id: XP_063134112   ⟸   XM_063278042
- Peptide Label: isoform X1
- UniProtKB: A6IYX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414032   ⟸   NM_001427103
- UniProtKB: D4AAU1 (UniProtKB/TrEMBL),   A6IYX6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099556   ⟸   ENSRNOT00000138119
Ensembl Acc Id: ENSRNOP00000111688   ⟸   ENSRNOT00000170748
Ensembl Acc Id: ENSRNOP00000101745   ⟸   ENSRNOT00000165430
Ensembl Acc Id: ENSRNOP00000070661   ⟸   ENSRNOT00000081116
Ensembl Acc Id: ENSRNOP00000103388   ⟸   ENSRNOT00000156495
Ensembl Acc Id: ENSRNOP00000109114   ⟸   ENSRNOT00000170707
Protein Domains
RNA polymerase II assembly factor Rtp1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAU1-F1-model_v2 AlphaFold D4AAU1 1-1084 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701123
Promoter ID:EPDNEW_R11638
Type:single initiation site
Name:Tango6_1
Description:transport and golgi organization 6 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01938,846,279 - 38,846,339EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559841 AgrOrtholog
BioCyc Gene G2FUF-5776 BioCyc
Ensembl Genes ENSRNOG00000022524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030768.8 UniProtKB/TrEMBL
  ENSRNOT00000063977.4 UniProtKB/TrEMBL
  ENSRNOT00000104052.1 UniProtKB/TrEMBL
  ENSRNOT00000138119 ENTREZGENE
  ENSRNOT00000156495 ENTREZGENE
  ENSRNOT00000170748 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  DUF2411 UniProtKB/TrEMBL
  DUF2435 UniProtKB/TrEMBL
  TANGO6/Rtp1 UniProtKB/TrEMBL
NCBI Gene 307816 ENTREZGENE
PANTHER PTHR20959 UniProtKB/TrEMBL
  TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 HOMOLOG UniProtKB/TrEMBL
Pfam ARM_TANGO6 UniProtKB/TrEMBL
  DUF2435 UniProtKB/TrEMBL
  RTP1_C2 UniProtKB/TrEMBL
  TANGO6_N UniProtKB/TrEMBL
PhenoGen Tango6 PhenoGen
RatGTEx ENSRNOG00000022524 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6ANW4_RAT UniProtKB/TrEMBL
  A6IYX6 ENTREZGENE, UniProtKB/TrEMBL
  D4A9F1 ENTREZGENE, UniProtKB/TrEMBL
  D4AAU1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-09 Tango6  transport and golgi organization 6 homolog  Tango6  transport and golgi organization 6 homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-22 Tango6  transport and golgi organization 6 homolog (Drosophila)  RGD1559841  similar to expressed sequence AW413431  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 RGD1559841  similar to expressed sequence AW413431  LOC679858  hypothetical protein LOC679858  Data merged from RGD:1583631 1643240 APPROVED
2008-04-30 RGD1559841  similar to expressed sequence AW413431   RGD1559841_predicted  similar to expressed sequence AW413431 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC679858  hypothetical protein LOC679858      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1559841_predicted  similar to expressed sequence AW413431 (predicted)  LOC307816  similar to expressed sequence AW413431  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307816  similar to expressed sequence AW413431      Symbol and Name status set to provisional 70820 PROVISIONAL