Pusl1 (pseudouridine synthase like 1) - Rat Genome Database

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Gene: Pusl1 (pseudouridine synthase like 1) Rattus norvegicus
Analyze
Symbol: Pusl1
Name: pseudouridine synthase like 1
RGD ID: 1559560
Description: Predicted to enable pseudouridine synthase activity. Predicted to be involved in tRNA pseudouridine synthesis. Predicted to be located in mitochondrion. Orthologous to human PUSL1 (pseudouridine synthase like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362681; pseudouridylate synthase-like 1; similar to pseudouridylate synthase-like 1; tRNA pseudouridine synthase-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,773,284 - 171,782,893 (-)NCBIGRCr8
mRatBN7.25166,497,643 - 166,500,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,496,755 - 166,500,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,202,453 - 169,205,457 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,023,874 - 171,026,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,986,406 - 170,989,410 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,326,755 - 173,339,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,336,034 - 173,340,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,811,652 - 176,815,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,745,715 - 172,749,571 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,697,479 - 164,701,335 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Pusl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,773,284 - 171,782,893 (-)NCBIGRCr8
mRatBN7.25166,497,643 - 166,500,647 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,496,755 - 166,500,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,202,453 - 169,205,457 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,023,874 - 171,026,878 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,986,406 - 170,989,410 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,326,755 - 173,339,934 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,336,034 - 173,340,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,811,652 - 176,815,508 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,745,715 - 172,749,571 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,697,479 - 164,701,335 (-)NCBICelera
Cytogenetic Map5q36NCBI
PUSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,308,597 - 1,311,677 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,308,597 - 1,311,677 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,243,977 - 1,247,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,233,857 - 1,236,920 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411,283,916 - 1,286,979NCBI
Celera11,334,084 - 1,337,147 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1515,603 - 518,659 (+)NCBIHuRef
CHM1_111,231,025 - 1,234,088 (+)NCBICHM1_1
T2T-CHM13v2.01740,148 - 743,228 (+)NCBIT2T-CHM13v2.0
Pusl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,973,314 - 155,976,231 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,972,336 - 155,976,238 (-)EnsemblGRCm39 Ensembl
GRCm384155,888,857 - 155,891,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,887,879 - 155,891,781 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,262,966 - 155,265,871 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,732,413 - 154,735,569 (-)NCBIMGSCv36mm8
Celera4158,159,833 - 158,162,725 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.66NCBI
Pusl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,491,506 - 9,494,520 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,491,613 - 9,494,746 (-)NCBIChiLan1.0ChiLan1.0
PUSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,915,523 - 226,919,100 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,612,211 - 225,615,302 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,263 - 66,360 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,263,656 - 1,266,661 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,263,656 - 1,266,661 (+)Ensemblpanpan1.1panPan2
PUSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,482,802 - 56,485,778 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,482,363 - 56,485,783 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,558,999 - 56,562,109 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,684,922 - 56,688,026 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,684,952 - 56,687,513 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,675,637 - 56,678,746 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,567,929 - 56,571,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,957,933 - 56,961,044 (+)NCBIUU_Cfam_GSD_1.0
Pusl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,629,752 - 27,632,651 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,833,798 - 1,836,696 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,833,298 - 1,836,101 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PUSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,593,959 - 63,599,019 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,593,539 - 63,596,921 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,091,967 - 58,094,995 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PUSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,139,479 - 130,142,819 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,139,480 - 130,142,342 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,705,841 - 34,709,175 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pusl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,299,449 - 8,302,320 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,299,449 - 8,302,333 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pusl1
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:93
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000067704
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat

Markers in Region
RH130347  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,497,146 - 166,497,394 (+)MAPPERmRatBN7.2
Rnor_6.05173,336,426 - 173,336,673NCBIRnor6.0
Rnor_5.05176,812,044 - 176,812,291UniSTSRnor5.0
RGSC_v3.45172,746,107 - 172,746,354UniSTSRGSC3.4
Celera5164,697,871 - 164,698,118UniSTS
RH 3.4 Map51173.8UniSTS
Cytogenetic Map5q36UniSTS
RH143513  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,497,662 - 166,497,785 (+)MAPPERmRatBN7.2
Rnor_6.05173,336,942 - 173,337,064NCBIRnor6.0
Rnor_5.05176,812,560 - 176,812,682UniSTSRnor5.0
RGSC_v3.45172,746,623 - 172,746,745UniSTSRGSC3.4
Celera5164,698,387 - 164,698,509UniSTS
RH 3.4 Map51173.8UniSTS
Cytogenetic Map5q36UniSTS
RH138955  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,497,812 - 166,497,946 (+)MAPPERmRatBN7.2
Rnor_6.05173,337,092 - 173,337,225NCBIRnor6.0
Rnor_5.05176,812,710 - 176,812,843UniSTSRnor5.0
RGSC_v3.45172,746,773 - 172,746,906UniSTSRGSC3.4
Celera5164,698,537 - 164,698,670UniSTS
RH 3.4 Map51174.7UniSTS
Cytogenetic Map5q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 17 10 2 10 63 20 39 11
Low 3 29 40 31 17 31 8 11 11 15 2 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001837845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001837846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC091248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000067704   ⟹   ENSRNOP00000059679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,496,755 - 166,500,611 (-)Ensembl
Rnor_6.0 Ensembl5173,336,034 - 173,339,890 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078453   ⟹   ENSRNOP00000074040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,497,644 - 166,500,588 (-)Ensembl
Rnor_6.0 Ensembl5173,337,022 - 173,340,026 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100198   ⟹   ENSRNOP00000084838
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5166,497,643 - 166,500,611 (-)Ensembl
RefSeq Acc Id: NM_001395608   ⟹   NP_001382537
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,779,875 - 171,782,879 (-)NCBI
mRatBN7.25166,497,643 - 166,500,647 (-)NCBI
RefSeq Acc Id: NM_001395609   ⟹   NP_001382538
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,779,875 - 171,782,879 (-)NCBI
mRatBN7.25166,497,643 - 166,500,647 (-)NCBI
RefSeq Acc Id: XM_063288095   ⟹   XP_063144165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,779,875 - 171,782,892 (-)NCBI
RefSeq Acc Id: XM_063288096   ⟹   XP_063144166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,774,548 - 171,782,891 (-)NCBI
RefSeq Acc Id: XM_063288097   ⟹   XP_063144167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,773,284 - 171,782,891 (-)NCBI
RefSeq Acc Id: XM_063288098   ⟹   XP_063144168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,779,875 - 171,782,891 (-)NCBI
RefSeq Acc Id: XM_063288099   ⟹   XP_063144169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,779,875 - 171,782,893 (-)NCBI
RefSeq Acc Id: XM_063288100   ⟹   XP_063144170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,779,875 - 171,782,893 (-)NCBI
RefSeq Acc Id: XR_010066441
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,774,548 - 171,782,891 (-)NCBI
RefSeq Acc Id: XR_010066442
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,774,548 - 171,782,891 (-)NCBI
RefSeq Acc Id: XR_010066443
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,773,284 - 171,782,891 (-)NCBI
RefSeq Acc Id: XR_010066444
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,780,538 - 171,782,891 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000059679   ⟸   ENSRNOT00000067704
RefSeq Acc Id: ENSRNOP00000074040   ⟸   ENSRNOT00000078453
RefSeq Acc Id: ENSRNOP00000084838   ⟸   ENSRNOT00000100198
RefSeq Acc Id: NP_001382538   ⟸   NM_001395609
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001382537   ⟸   NM_001395608
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K730 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144167   ⟸   XM_063288097
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063144166   ⟸   XM_063288096
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063144170   ⟸   XM_063288100
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144169   ⟸   XM_063288099
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063144165   ⟸   XM_063288095
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063144168   ⟸   XM_063288098
- Peptide Label: isoform X4
Protein Domains
Pseudouridine synthase I TruA alpha/beta

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K730-F1-model_v2 AlphaFold A0A0G2K730 1-291 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694336
Promoter ID:EPDNEW_R4861
Type:initiation region
Name:Pusl1_1
Description:pseudouridylate synthase-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05173,339,886 - 173,339,946EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559560 AgrOrtholog
BioCyc Gene G2FUF-38889 BioCyc
Ensembl Genes ENSRNOG00000022354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067704.3 UniProtKB/TrEMBL
  ENSRNOT00000078453 ENTREZGENE
  ENSRNOT00000078453.2 UniProtKB/TrEMBL
  ENSRNOT00000100198.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.580 UniProtKB/TrEMBL
  3.30.70.660 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7122692 IMAGE-MGC_LOAD
InterPro PsdUridine_synth_cat_dom UniProtKB/TrEMBL
  PsdUridine_synth_TruA UniProtKB/TrEMBL
  PsdUridine_synth_TruA_a/b_dom UniProtKB/TrEMBL
  PsdUridine_synth_TruA_C UniProtKB/TrEMBL
  TruA/RsuA/RluB/E/F_N UniProtKB/TrEMBL
KEGG Report rno:362681 UniProtKB/TrEMBL
MGC_CLONE MGC:95028 IMAGE-MGC_LOAD
NCBI Gene 362681 ENTREZGENE
PANTHER PseudoU_synth_1 UniProtKB/TrEMBL
  TRNA PSEUDOURIDINE SYNTHASE-LIKE 1 UniProtKB/TrEMBL
Pfam PseudoU_synth_1 UniProtKB/TrEMBL
PhenoGen Pusl1 PhenoGen
PIRSF tRNA_psdUrid_synth UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022354 RatGTEx
Superfamily-SCOP PsdUridine_synth_cat_dom UniProtKB/TrEMBL
UniProt A0A0G2K730 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A202_RAT UniProtKB/TrEMBL
  D3ZTC6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-09-21 Pusl1  pseudouridine synthase like 1  Pusl1  pseudouridylate synthase-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Pusl1  pseudouridylate synthase-like 1  LOC362681  similar to pseudouridylate synthase-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC362681  similar to pseudouridylate synthase-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL