Ubp1 (upstream binding protein 1) - Rat Genome Database
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Gene: Ubp1 (upstream binding protein 1) Mus musculus
Analyze
Symbol: Ubp1
Name: upstream binding protein 1
RGD ID: 1558580
MGI Page MGI
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in angiogenesis. Predicted to localize to cytosol and nucleoplasm. Is expressed in early conceptus; genitourinary system; and limb. Orthologous to human UBP1 (upstream binding protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; Aroclor 1254.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Cp2b; LBP; LBP-; LBP-1a; LBP-1b; NF2d; NF2d9; nuclear factor 2d9; upstream-binding protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,760,002 - 113,807,095 (+)NCBIGRCm39mm39
GRCm389113,930,939 - 113,978,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,930,934 - 113,977,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv379113,840,052 - 113,886,320 (+)NCBIGRCm37mm9NCBIm37
MGSCv369113,780,350 - 113,825,700 (+)NCBImm8
Celera9113,640,161 - 113,686,339 (+)NCBICelera
Cytogenetic Map9F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

References

Additional References at PubMed
PMID:5472365   PMID:7623810   PMID:8889548   PMID:10349636   PMID:10995745   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12666198   PMID:12904583  
PMID:14610273   PMID:14681479   PMID:15282311   PMID:15741177   PMID:15782199   PMID:15988015   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18287559   PMID:18799693  
PMID:19384868   PMID:19662162   PMID:19751393   PMID:20059953   PMID:20211142   PMID:20362541   PMID:20412781   PMID:21267068   PMID:21873635   PMID:26206133   PMID:26584622   PMID:26857472  
PMID:26930384   PMID:31040226   PMID:32098917  


Genomics

Comparative Map Data
Ubp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,760,002 - 113,807,095 (+)NCBIGRCm39mm39
GRCm389113,930,939 - 113,978,027 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,930,934 - 113,977,202 (+)EnsemblGRCm38mm10GRCm38
MGSCv379113,840,052 - 113,886,320 (+)NCBIGRCm37mm9NCBIm37
MGSCv369113,780,350 - 113,825,700 (+)NCBImm8
Celera9113,640,161 - 113,686,339 (+)NCBICelera
Cytogenetic Map9F3NCBI
UBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl333,388,336 - 33,441,371 (-)EnsemblGRCh38hg38GRCh38
GRCh38333,388,336 - 33,440,405 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37333,429,828 - 33,481,897 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,404,835 - 33,456,874 (-)NCBINCBI36hg18NCBI36
Build 34333,404,834 - 33,456,874NCBI
Celera333,373,357 - 33,425,407 (-)NCBI
Cytogenetic Map3p22.3NCBI
HuRef333,370,390 - 33,422,369 (-)NCBIHuRef
CHM1_1333,379,810 - 33,431,856 (-)NCBICHM1_1
Ubp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28113,869,771 - 113,915,625 (+)NCBI
Rnor_6.0 Ensembl8122,197,027 - 122,240,357 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.08122,196,576 - 122,241,368 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08121,510,557 - 121,554,898 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,574,348 - 118,618,657 (+)NCBIRGSC3.4rn4RGSC3.4
Celera8113,117,821 - 113,162,107 (+)NCBICelera
Cytogenetic Map8q32NCBI
Ubp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421618,696 - 681,994 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955421618,696 - 681,994 (-)NCBIChiLan1.0ChiLan1.0
UBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1333,611,712 - 33,663,175 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,611,712 - 33,663,175 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0333,310,506 - 33,362,589 (-)NCBIMhudiblu_PPA_v0panPan3
UBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl233,444,758 - 3,497,263 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1233,445,730 - 3,498,242 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ubp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647323,658,243 - 23,711,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,204,947 - 19,276,969 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11319,203,965 - 19,276,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,785,120 - 20,831,156 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,880,650 - 77,933,829 (-)NCBI
ChlSab1.1 Ensembl1577,882,632 - 77,933,864 (-)Ensembl
Ubp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478811,350,243 - 11,409,942 (-)NCBI

Position Markers
RH129034  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37310,537,851 - 10,537,995UniSTSGRCm37
MGSCv379113,885,954 - 113,886,098UniSTSGRCm37
Celera1446,933,903 - 46,934,047UniSTS
Celera9113,685,973 - 113,686,117UniSTS
Celera310,575,323 - 10,575,467UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse
13515058Adip20d_madiposity 20d (mouse)9108915010118915010Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1204
Count of miRNA genes:405
Interacting mature miRNAs:450
Transcripts:ENSMUST00000009885, ENSMUST00000084885, ENSMUST00000116492
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001083319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_164181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB221581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC107803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY182062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE853131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD806234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF172242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000009885   ⟹   ENSMUSP00000009885
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,930,934 - 113,977,199 (+)Ensembl
RefSeq Acc Id: ENSMUST00000084885   ⟹   ENSMUSP00000081946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,930,934 - 113,977,199 (+)Ensembl
RefSeq Acc Id: ENSMUST00000116492   ⟹   ENSMUSP00000112192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,931,564 - 113,976,817 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214095   ⟹   ENSMUSP00000149908
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,931,435 - 113,975,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216293
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,969,225 - 113,977,001 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216558   ⟹   ENSMUSP00000150023
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,931,654 - 113,975,383 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216891
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9113,931,629 - 113,977,202 (+)Ensembl
RefSeq Acc Id: NM_001083319   ⟹   NP_001076788
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,216 - 113,807,095 (+)NCBI
GRCm389113,931,148 - 113,978,027 (+)NCBI
MGSCv379113,840,052 - 113,886,320 (+)RGD
Celera9113,640,161 - 113,686,339 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001372507   ⟹   NP_001359436
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,216 - 113,807,095 (+)NCBI
GRCm389113,931,148 - 113,978,027 (+)NCBI
RefSeq Acc Id: NM_001372508   ⟹   NP_001359437
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,216 - 113,807,095 (+)NCBI
GRCm389113,931,148 - 113,978,027 (+)NCBI
RefSeq Acc Id: NM_001372510   ⟹   NP_001359439
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,380 - 113,807,095 (+)NCBI
GRCm389113,931,312 - 113,978,027 (+)NCBI
RefSeq Acc Id: NM_001372511   ⟹   NP_001359440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,380 - 113,807,095 (+)NCBI
GRCm389113,931,312 - 113,978,027 (+)NCBI
RefSeq Acc Id: NM_001372512   ⟹   NP_001359441
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,216 - 113,807,095 (+)NCBI
GRCm389113,931,148 - 113,978,027 (+)NCBI
RefSeq Acc Id: NM_001372514   ⟹   NP_001359443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,216 - 113,807,095 (+)NCBI
GRCm389113,931,148 - 113,978,027 (+)NCBI
RefSeq Acc Id: NM_013699   ⟹   NP_038727
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,216 - 113,807,095 (+)NCBI
GRCm389113,931,148 - 113,978,027 (+)NCBI
MGSCv379113,840,052 - 113,886,320 (+)RGD
Celera9113,640,161 - 113,686,339 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_164181
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,380 - 113,807,095 (+)NCBI
GRCm389113,931,312 - 113,978,027 (+)NCBI
RefSeq Acc Id: XM_006512050   ⟹   XP_006512113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512052   ⟹   XP_006512115
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512055   ⟹   XP_006512118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,007 - 113,806,270 (+)NCBI
GRCm389113,930,939 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512058   ⟹   XP_006512121
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,785,101 - 113,806,270 (+)NCBI
GRCm389113,956,033 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244245   ⟹   XP_030100105
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,785,101 - 113,806,270 (+)NCBI
GRCm389113,956,033 - 113,977,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244246   ⟹   XP_030100106
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,785,066 - 113,806,270 (+)NCBI
GRCm389113,955,998 - 113,977,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154842   ⟹   XP_036010735
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,002 - 113,806,270 (+)NCBI
RefSeq Acc Id: XR_001778852
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778853
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778854
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778855
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778856
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778857
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,976,999 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778858
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,977,202 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004935386
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,804,847 (+)NCBI
RefSeq Acc Id: XR_004935387
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,804,847 (+)NCBI
RefSeq Acc Id: XR_379864
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399113,760,399 - 113,806,270 (+)NCBI
GRCm389113,931,387 - 113,977,202 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001076788 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359436 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359437 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359439 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359440 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359441 (Get FASTA)   NCBI Sequence Viewer  
  NP_001359443 (Get FASTA)   NCBI Sequence Viewer  
  NP_038727 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512113 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512115 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512118 (Get FASTA)   NCBI Sequence Viewer  
  XP_006512121 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100105 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100106 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010735 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52244 (Get FASTA)   NCBI Sequence Viewer  
  AAI39829 (Get FASTA)   NCBI Sequence Viewer  
  AAI41083 (Get FASTA)   NCBI Sequence Viewer  
  AAO24130 (Get FASTA)   NCBI Sequence Viewer  
  BAC37463 (Get FASTA)   NCBI Sequence Viewer  
  BAC37754 (Get FASTA)   NCBI Sequence Viewer  
  BAC40001 (Get FASTA)   NCBI Sequence Viewer  
  BAE24526 (Get FASTA)   NCBI Sequence Viewer  
  BAE25332 (Get FASTA)   NCBI Sequence Viewer  
  BAE26852 (Get FASTA)   NCBI Sequence Viewer  
  EDL08942 (Get FASTA)   NCBI Sequence Viewer  
  Q811S7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001076788   ⟸   NM_001083319
- Peptide Label: isoform a
- UniProtKB: Q811S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_038727   ⟸   NM_013699
- Peptide Label: isoform b
- UniProtKB: Q811S7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512118   ⟸   XM_006512055
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006512113   ⟸   XM_006512050
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006512115   ⟸   XM_006512052
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006512121   ⟸   XM_006512058
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030100106   ⟸   XM_030244246
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030100105   ⟸   XM_030244245
- Peptide Label: isoform X6
RefSeq Acc Id: NP_001359436   ⟸   NM_001372507
- Peptide Label: isoform a
RefSeq Acc Id: NP_001359443   ⟸   NM_001372514
- Peptide Label: isoform b
RefSeq Acc Id: NP_001359437   ⟸   NM_001372508
- Peptide Label: isoform a
RefSeq Acc Id: NP_001359441   ⟸   NM_001372512
- Peptide Label: isoform b
RefSeq Acc Id: NP_001359439   ⟸   NM_001372510
- Peptide Label: isoform a
RefSeq Acc Id: NP_001359440   ⟸   NM_001372511
- Peptide Label: isoform b
RefSeq Acc Id: ENSMUSP00000081946   ⟸   ENSMUST00000084885
RefSeq Acc Id: ENSMUSP00000150023   ⟸   ENSMUST00000216558
RefSeq Acc Id: ENSMUSP00000009885   ⟸   ENSMUST00000009885
RefSeq Acc Id: ENSMUSP00000149908   ⟸   ENSMUST00000214095
RefSeq Acc Id: ENSMUSP00000112192   ⟸   ENSMUST00000116492
RefSeq Acc Id: XP_036010735   ⟸   XM_036154842
- Peptide Label: isoform X4
Protein Domains
CP2   SAM_3

Promoters
RGD ID:6845341
Promoter ID:MM_KWN:59004
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000009885,   ENSMUST00000084885,   ENSMUST00000116492,   NM_001083319,   NM_013699
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369113,839,121 - 113,840,417 (+)MPROMDB
RGD ID:8671090
Promoter ID:EPDNEW_M13575
Type:initiation region
Name:Ubp1_1
Description:Mus musculus upstream binding protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13576  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389113,931,003 - 113,931,063EPDNEW
RGD ID:8671092
Promoter ID:EPDNEW_M13576
Type:initiation region
Name:Ubp1_2
Description:Mus musculus upstream binding protein 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13575  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389113,931,148 - 113,931,208EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104889 AgrOrtholog
Ensembl Genes ENSMUSG00000009741 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000009885 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000081946 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112192 UniProtKB/Swiss-Prot
  ENSMUSP00000149908 UniProtKB/Swiss-Prot
  ENSMUSP00000150023 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000009885 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000084885 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000116492 UniProtKB/Swiss-Prot
  ENSMUST00000214095 UniProtKB/Swiss-Prot
  ENSMUST00000216558 UniProtKB/Swiss-Prot
  ENSMUST00000216891 ENTREZGENE
Gene3D-CATH 1.10.150.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubp1_SAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22221 UniProtKB/Swiss-Prot
MGD MGI:104889 ENTREZGENE
NCBI Gene 22221 ENTREZGENE
Pfam CP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ubp1 PhenoGen
Superfamily-SCOP SSF47769 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RUD2_MOUSE UniProtKB/TrEMBL
  Q811S7 ENTREZGENE
  Q8BH21_MOUSE UniProtKB/TrEMBL
  UBIP1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A4QPG4 UniProtKB/Swiss-Prot
  Q3UPR3 UniProtKB/Swiss-Prot
  Q3US11 UniProtKB/Swiss-Prot
  Q60786 UniProtKB/Swiss-Prot
  Q8C514 UniProtKB/Swiss-Prot