Elmod3 (ELMO/CED-12 domain containing 3) - Rat Genome Database

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Gene: Elmod3 (ELMO/CED-12 domain containing 3) Mus musculus
Analyze
Symbol: Elmod3
Name: ELMO/CED-12 domain containing 3
RGD ID: 1558565
MGI Page MGI
Description: Predicted to enable GTPase activator activity. Predicted to be located in cilium; cytoplasm; and cytoskeleton. Is expressed in cerebral cortex; cerebral cortex ventricular layer; cortical plate; hindbrain; and olfactory epithelium. Used to study autosomal recessive nonsyndromic deafness 88. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness and autosomal recessive nonsyndromic deafness 88. Orthologous to human ELMOD3 (ELMO domain containing 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI844780; C330008I15Rik; ELMO; ELMO domain-containing protein 3; MGC27575; Rbed; Rbed1; RBM2; RBM29; RNA binding motif and ELMO domain 1; RNA-binding motif and ELMO domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,542,905 - 72,575,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,542,905 - 72,575,396 (-)EnsemblGRCm39 Ensembl
GRCm38672,565,922 - 72,598,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,565,922 - 72,598,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,515,921 - 72,548,336 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,495,436 - 72,527,851 (-)NCBIMGSCv36mm8
Celera674,664,110 - 74,696,606 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21873635   PMID:22177965   PMID:23375831   PMID:31628468   PMID:34321999   PMID:34818063  


Genomics

Comparative Map Data
Elmod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,542,905 - 72,575,396 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,542,905 - 72,575,396 (-)EnsemblGRCm39 Ensembl
GRCm38672,565,922 - 72,598,431 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,565,922 - 72,598,413 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,515,921 - 72,548,336 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,495,436 - 72,527,851 (-)NCBIMGSCv36mm8
Celera674,664,110 - 74,696,606 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
ELMOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,354,769 - 85,391,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,354,394 - 85,391,752 (+)EnsemblGRCh38hg38GRCh38
GRCh37285,581,892 - 85,618,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,435,447 - 85,472,382 (+)NCBINCBI36Build 36hg18NCBI36
Build 34285,493,593 - 85,530,527NCBI
Celera285,409,846 - 85,447,061 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,478,667 - 85,515,684 (+)NCBIHuRef
CHM1_1285,511,554 - 85,548,621 (+)NCBICHM1_1
T2T-CHM13v2.0285,356,760 - 85,393,759 (+)NCBIT2T-CHM13v2.0
Elmod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,172,819 - 106,211,286 (-)NCBIGRCr8
mRatBN7.24104,614,665 - 104,653,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,614,676 - 104,653,053 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,993,517 - 110,032,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,768,639 - 105,807,263 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,382,429 - 104,420,830 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,422,256 - 100,465,152 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,422,252 - 100,465,112 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,192,607 - 165,237,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,866,419 - 106,099,850 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,110,901 - 106,344,331 (-)NCBI
Celera493,768,136 - 93,805,963 (-)NCBICelera
Cytogenetic Map4q32NCBI
Elmod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,083,085 - 2,106,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,082,480 - 2,107,599 (-)NCBIChiLan1.0ChiLan1.0
ELMOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,991,659 - 41,028,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,994,392 - 41,031,424 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,407,326 - 85,444,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A86,958,874 - 86,994,897 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,958,957 - 86,994,897 (+)Ensemblpanpan1.1panPan2
ELMOD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,642,101 - 39,668,079 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,643,676 - 39,665,726 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,313,501 - 39,339,626 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,451,641 - 40,477,552 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1740,446,329 - 40,477,528 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,518,851 - 39,544,957 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,590,458 - 39,616,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,990,386 - 40,016,502 (-)NCBIUU_Cfam_GSD_1.0
Elmod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,031,658 - 79,053,307 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,805,795 - 1,825,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,805,141 - 1,827,086 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELMOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,369,820 - 59,401,151 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,369,816 - 59,401,193 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,323,190 - 62,354,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELMOD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,765,160 - 21,803,774 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604590,635,934 - 90,701,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elmod3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,749,658 - 17,774,891 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,749,004 - 17,774,891 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elmod3
1294 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1593
Count of miRNA genes:638
Interacting mature miRNAs:771
Transcripts:ENSMUST00000070990, ENSMUST00000114069, ENSMUST00000140825, ENSMUST00000141833, ENSMUST00000148108, ENSMUST00000152705
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7129960586252701Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse

Markers in Region
BE198920  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,566,063 - 72,566,191UniSTSGRCm38
MGSCv37672,516,057 - 72,516,185UniSTSGRCm37
Celera674,664,246 - 74,664,374UniSTS
Cytogenetic Map6C1UniSTS
Whitehead/MRC_RH6721.28UniSTS
AI844780  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38672,565,959 - 72,566,108UniSTSGRCm38
MGSCv37672,515,953 - 72,516,102UniSTSGRCm37
Celera674,664,142 - 74,664,291UniSTS
Cytogenetic Map6C1UniSTS
Whitehead/MRC_RH6721.48UniSTS
Rbed1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C1UniSTS
cM Map6 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001364554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE944793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU614609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY074266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000070990   ⟹   ENSMUSP00000067768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,542,917 - 72,575,326 (-)Ensembl
GRCm38.p6 Ensembl672,565,934 - 72,598,343 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114069   ⟹   ENSMUSP00000109703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,542,905 - 72,575,325 (-)Ensembl
GRCm38.p6 Ensembl672,565,922 - 72,598,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,561,440 - 72,572,004 (-)Ensembl
GRCm38.p6 Ensembl672,584,457 - 72,595,021 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141833   ⟹   ENSMUSP00000145544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,544,533 - 72,575,378 (-)Ensembl
GRCm38.p6 Ensembl672,567,550 - 72,598,395 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148108   ⟹   ENSMUSP00000145907
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,546,311 - 72,575,344 (-)Ensembl
GRCm38.p6 Ensembl672,569,328 - 72,598,361 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152705   ⟹   ENSMUSP00000116448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl672,564,606 - 72,575,396 (-)Ensembl
GRCm38.p6 Ensembl672,587,623 - 72,598,413 (-)Ensembl
RefSeq Acc Id: NM_001253692   ⟹   NP_001240621
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,396 (-)NCBI
GRCm38672,565,922 - 72,598,413 (-)ENTREZGENE
Celera674,664,105 - 74,696,677 (-)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001364553   ⟹   NP_001351482
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,396 (-)NCBI
GRCm38672,565,922 - 72,598,413 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001364554   ⟹   NP_001351483
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,280 (-)NCBI
GRCm38672,565,922 - 72,598,297 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144917   ⟹   NP_659166
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,396 (-)NCBI
GRCm38672,565,922 - 72,598,413 (-)ENTREZGENE
MGSCv37672,515,921 - 72,548,336 (-)RGD
Celera674,664,105 - 74,696,677 (-)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030255333   ⟹   XP_030111193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,387 (-)NCBI
GRCm38672,565,922 - 72,598,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255334   ⟹   XP_030111194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,387 (-)NCBI
GRCm38672,565,922 - 72,598,431 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255335   ⟹   XP_030111195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39672,542,905 - 72,575,387 (-)NCBI
GRCm38672,565,922 - 72,598,431 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_659166   ⟸   NM_144917
- UniProtKB: Q3TNV2 (UniProtKB/Swiss-Prot),   Q91YP6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240621   ⟸   NM_001253692
- UniProtKB: Q3TNV2 (UniProtKB/Swiss-Prot),   Q91YP6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030111195   ⟸   XM_030255335
- Peptide Label: isoform X1
- UniProtKB: Q91YP6 (UniProtKB/Swiss-Prot),   Q3TNV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030111194   ⟸   XM_030255334
- Peptide Label: isoform X1
- UniProtKB: Q91YP6 (UniProtKB/Swiss-Prot),   Q3TNV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030111193   ⟸   XM_030255333
- Peptide Label: isoform X1
- UniProtKB: Q91YP6 (UniProtKB/Swiss-Prot),   Q3TNV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001351482   ⟸   NM_001364553
- UniProtKB: Q91YP6 (UniProtKB/Swiss-Prot),   Q3TNV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001351483   ⟸   NM_001364554
- UniProtKB: Q91YP6 (UniProtKB/Swiss-Prot),   Q3TNV2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000067768   ⟸   ENSMUST00000070990
RefSeq Acc Id: ENSMUSP00000116448   ⟸   ENSMUST00000152705
RefSeq Acc Id: ENSMUSP00000145907   ⟸   ENSMUST00000148108
RefSeq Acc Id: ENSMUSP00000109703   ⟸   ENSMUST00000114069
RefSeq Acc Id: ENSMUSP00000145544   ⟸   ENSMUST00000141833
Protein Domains
ELMO

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91YP6-F1-model_v2 AlphaFold Q91YP6 1-381 view protein structure

Promoters
RGD ID:6839223
Promoter ID:MM_KWN:46475
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000057465
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,545,401 - 72,545,901 (-)MPROMDB
RGD ID:6839234
Promoter ID:MM_KWN:46476
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000070597,   ENSMUST00000114069,   OTTMUST00000057461,   OTTMUST00000057463,   OTTMUST00000057464,   UC009CIV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36672,547,741 - 72,549,122 (-)MPROMDB
RGD ID:6890030
Promoter ID:EPDNEW_M8466
Type:initiation region
Name:Elmod3_1
Description:Mus musculus ELMO/CED-12 domain containing 3 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38672,598,411 - 72,598,471EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445168 AgrOrtholog
Ensembl Genes ENSMUSG00000056698 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070990 ENTREZGENE
  ENSMUST00000070990.8 UniProtKB/Swiss-Prot
  ENSMUST00000114069 ENTREZGENE
  ENSMUST00000114069.8 UniProtKB/Swiss-Prot
  ENSMUST00000141833.8 UniProtKB/Swiss-Prot
  ENSMUST00000148108.8 UniProtKB/TrEMBL
  ENSMUST00000152705.3 UniProtKB/TrEMBL
InterPro ELMO_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232089 UniProtKB/Swiss-Prot
MGD MGI:2445168 ENTREZGENE
NCBI Gene 232089 ENTREZGENE
PANTHER ENGULFMENT AND CELL MOTILITY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12771:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ELMO_CED12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Elmod3 PhenoGen
PROSITE ELMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RPA9_MOUSE UniProtKB/TrEMBL
  D3Z5B5_MOUSE UniProtKB/TrEMBL
  ELMD3_MOUSE UniProtKB/Swiss-Prot
  Q3TNV2 ENTREZGENE
  Q91YP6 ENTREZGENE
UniProt Secondary Q3TNV2 UniProtKB/Swiss-Prot