Ocel1 (occludin/ELL domain containing 1)

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Gene: Ocel1 (occludin/ELL domain containing 1) Mus musculus

Analyze

Symbol:

Ocel1

Name:

occludin/ELL domain containing 1

RGD ID:

1558555

MGI Page

MGI

Description:

Orthologous to human OCEL1 (occludin/ELL domain containing 1); INTERACTS WITH benzo[a]pyrene; clofibrate; cobalt dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

9430098E02Rik; AI326022; AI593544; expressed sequence AI326022; occludin/ELL domain-containing protein 1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,823,942 - 71,826,333 (+)	NCBI	GRCm39		mm39
GRCm38	8	71,371,298 - 71,373,689 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,371,298 - 71,379,361 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,895,197 - 73,897,588 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	74,300,343 - 74,302,147 (+)	NCBI			mm8
Celera	8	73,895,968 - 73,898,359 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

calcitriol (ISO)

cisplatin (ISO)

clofibrate (EXP)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

finasteride (ISO)

hydrogen peroxide (ISO)

leflunomide (ISO)

menadione (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

silicon dioxide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

References - curated


1.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGD data from the GO Consortium
3.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:21677750

Genomics

Comparative Map Data

Ocel1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,823,942 - 71,826,333 (+)	NCBI	GRCm39		mm39
GRCm38	8	71,371,298 - 71,373,689 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,371,298 - 71,379,361 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,895,197 - 73,897,588 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	74,300,343 - 74,302,147 (+)	NCBI			mm8
Celera	8	73,895,968 - 73,898,359 (+)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI

OCEL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	17,226,213 - 17,229,219 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	17,226,226 - 17,229,219 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	17,337,040 - 17,340,028 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,198,055 - 17,201,028 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	19	17,238,595 - 17,241,568 (+)	NCBI
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,904,380 - 16,907,353 (+)	NCBI		HuRef
CHM1_1	19	17,336,557 - 17,339,572 (+)	NCBI		CHM1_1

Ocel1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	16	19,766,728 - 19,769,034 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,767,264 - 19,769,033 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,627,362 - 19,629,155 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,532,477 - 18,534,246 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	16	18,250,881 - 18,252,650 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Ocel1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955524	966,191 - 967,961 (-)	NCBI	ChiLan1.0	ChiLan1.0

OCEL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	17,687,441 - 17,690,447 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,687,441 - 17,690,447 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	16,713,136 - 16,716,252 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

OCEL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	45,502,217 - 45,504,830 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	45,502,862 - 45,505,250 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ocel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936596	3,608,468 - 3,610,102 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OCEL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,442,210 - 60,445,008 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,442,203 - 60,445,016 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	60,088,540 - 60,091,352 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OCEL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,720,620 - 15,724,276 (+)	NCBI

Ocel1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624908	681,457 - 683,307 (-)	NCBI

Position Markers

AI326022

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,379,169 - 71,379,314	UniSTS	GRCm38
MGSCv37	8	73,903,068 - 73,903,213	UniSTS	GRCm37
Celera	8	73,903,839 - 73,903,984	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Whitehead/MRC_RH	8	763.41	UniSTS

AI593544

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,372,827 - 71,372,973	UniSTS	GRCm38
MGSCv37	8	73,896,726 - 73,896,872	UniSTS	GRCm37
Celera	8	73,897,497 - 73,897,643	UniSTS
Cytogenetic Map	8	C1	UniSTS
Whitehead/MRC_RH	8	764.73	UniSTS

AV090102

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,374,198 - 71,374,306	UniSTS	GRCm38
MGSCv37	8	73,898,097 - 73,898,205	UniSTS	GRCm37
Celera	8	73,898,868 - 73,898,976	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Whitehead/MRC_RH	8	766.95	UniSTS

X76654

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,374,149 - 71,374,305	UniSTS	GRCm38
MGSCv37	8	73,898,048 - 73,898,204	UniSTS	GRCm37
Celera	8	73,898,819 - 73,898,975	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Whitehead/MRC_RH	8	764.06	UniSTS
Whitehead_YAC	8		UniSTS

X76654

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	71,374,198 - 71,374,297	UniSTS	GRCm38
MGSCv37	8	73,898,097 - 73,898,196	UniSTS	GRCm37
Celera	8	73,898,868 - 73,898,967	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Whitehead/MRC_RH	8	764.06	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44294880	78295025	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2771
Count of miRNA genes:	837
Interacting mature miRNAs:	1143
Transcripts:	ENSMUST00000002469, ENSMUST00000110051, ENSMUST00000110052, ENSMUST00000126049
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001293800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_029865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_122030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK020528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK143433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK155219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK163762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB766991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY542600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000002469 ⟹ ENSMUSP00000002469

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,371,339 - 71,373,689 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000110051 ⟹ ENSMUSP00000105678

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,371,298 - 71,374,382 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000110052 ⟹ ENSMUSP00000105679

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,371,346 - 71,379,361 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000126049

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	71,372,473 - 71,372,955 (+)	Ensembl

RefSeq Acc Id:

NM_001293800 ⟹ NP_001280729

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,823,942 - 71,826,333 (+)	NCBI
GRCm38	8	71,371,298 - 71,373,689 (+)	NCBI
Celera	8	73,895,968 - 73,898,359 (+)	NCBI

Sequence:

show sequence

CCCGCCCTAGCGGCCGAGCGCCCGTGCCAACGGCTCCACCCGCAGTTCCTGCACAGCTGCGTTC
CCGGCGGCAGGGCCAGACGGGGCTCTGGGACAGGTGACACCGAGTGGGATCCTCGGATAACCAC
AGGCGGGCGGGGGCTGGAAGCTTTGTGGGCCGTAACCCCGCGAGGCAAGAGGCGAAGGGGTCGT
CTCGACTCGGACCCCAGTCGCCCTCCGCTGCTTTGCGCTCTTCCGGTTTCAAGAATGGGGCGGG
GCCCGCGCTGCACCGCCAGCCACTCTCGAGCATGACGCCGCGGTGACGTCGCGGCGCCTCGTCA
GTGCCCCTTTCCGGGATCCGCACTCTGGGTTGCGCGGCCAGCCAACCGCGCTCGCGTATGCAAA
TACATGCAGGTCCCGCCTCCAGGCGCGGCCGGCGGGGTCCTCTGGCCAGGCTCTCAGGCCCGGA
AGCCACTTGCAATTCGCGCCCTGCCGCCAGGGGGCGCCAGAGAGCTGCAGCCCCACGCATGCCT
GCCCCGGAGCGTCCGCGCTCCAGACGGCCGCAGAGCCAGCCCGGGCCGGGAGAGCTCTGCGTGA
GGCCCCGGAAGATCGTGTTTGCGGATGAGCTGCGCCCCCGGGAGCCACTGCACCCTGAGAAGCA
TCCCAGAGATCTGGGACCCCGCCTCAACCCAGTACCTGACTACGAGCTAAGGAGGCTCGCATGG
CAGCTCATGTCAGGAGAGAGTTTGAGAAGAAGCGAGGGGATCCTGGCTTCCTGGATAAGCAGGC
TCGCTGTAACTACCTGAAGGGTAAACTCAGGCACCTCAAGGCCCAGATCCGCAAATTTGATGAC
CAGCAGGACAGCAACAGTGAAGACTCTGTGTACTTCTGAGTGTCCTGGAGATGGTGGCGGGCTC
CTCCTCCAATAGGAAACCACACCAGTTCTTCCAGGGAGTAAACATGGATTAGACACCTACTGTG
TGCAGCTACCTAAAAGCATCCCTTCATTTTACAGAAGGGGAAATGAGGTTCATAGACCTGTCTG
AGGTCTCATATGGGGGCAATGGCTGTGTAGATTCCAGGGGGCATAGTCAGAAGGCATGAGTTGG
GGCAGCCTGGCATAAGTATTGTGATGGGGCATACTAGGGGTAAGGGCTGGGCAATGCTTGGGGC
CTGCCTGCAGGGGCGCAATCCAGGACACCTTGATCCTGTCCACTCTGCATAGCTCCTCAGATGA
AACTAACCTGAGCCACTGAGGATGACAAGTCCCAGGCCACTTGCAGGCCAGGAGTCTCCTAGGA
AGATGTCTTCCAACAGAGAGGACCACATGTGTGGAGTTTGTAGTAAAAGTAGATCAGCTAGGGC
TTGAACGCAGGCCTCGGGCTCAATAGGCATGGATCTCACTCAGTCCCACTCCACAGTTGGGCCC
CTAACTCCCTGGTATTTTTTGTTTTCCAAGGCTGGGTTTCTCTGTTTAGCACTATCCTTAAACT
CACTATATAGACCA

hide sequence

RefSeq Acc Id:

NM_029865 ⟹ NP_084141

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,823,942 - 71,826,333 (+)	NCBI
GRCm38	8	71,371,298 - 71,373,689 (+)	ENTREZGENE
MGSCv37	8	73,895,197 - 73,897,588 (+)	RGD
Celera	8	73,895,968 - 73,898,359 (+)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

CCCGCCCTAGCGGCCGAGCGCCCGTGCCAACGGCTCCACCCGCAGTTCCTGCACAGCTGCGTTC
CCGGCGGCAGGGCCAGACGGGGCTCTGGGACAGGTGACACCGAGTGGGATCCTCGGATAACCAC
AGGCGGGCGGGGGCTGGAAGCTTTGTGGGCCGTAACCCCGCGAGGCAAGAGGCGAAGGGGTCGT
CTCGACTCGGACCCCAGTCGCCCTCCGCTGCTTTGCGCTCTTCCGGTTTCAAGAATGGGGCGGG
GCCCGCGCTGCACCGCCAGCCACTCTCGAGCATGACGCCGCGGTGACGTCGCGGCGCCTCGTCA
GTGCCCCTTTCCGGGATCCGCACTCTGGGTTGCGCGGCCAGCCAACCGCGCTCGCGTATGCAAA
TACATGCAGGTCCCGCCTCCAGGCGCGGCCGGCGGGGTCCTCTGGCCAGGCTCTCAGGCCCGGA
AGCCACTTGCAATTCGCGCCCTGCCGCCAGGGGGCGCCAGAGAGCTGCAGCCCCACGCATGCCT
GCCCCGGAGCGTCCGCGCTCCAGACGGCCGCAGAGCCAGCCCGGGCCGGGAGAGCTCTGCGTGA
GGCCCCGGAAGATCGTGTTTGCGGATGAGCTGCGCCCCCGGGAGCCACTGCACCCTGAGAAGCA
TCCCAGAGATCTGGGACCCCGCCTCAACCCAGTACCTGACTACGAGCTTAAGTACCCACCAGTG
ACCAACAGAAGGGACCGGAGCCGCTATGCCGCAGTGTTCCAGGACCAGTATGGCGAGTTCTCGG
AGCTCCAGCGGGAGGTGGGGGCCACACAGGCTAAGCTCCAGCAACTGGAGGCCCTGCTGCTGTC
GCTGCCCCCGCCACGAAGCCAGAAGGAGGCTCGCATGGCAGCTCATGTCAGGAGAGAGTTTGAG
AAGAAGCGAGGGGATCCTGGCTTCCTGGATAAGCAGGCTCGCTGTAACTACCTGAAGGGTAAAC
TCAGGCACCTCAAGGCCCAGATCCGCAAATTTGATGACCAGCAGGACAGCAACAGTGAAGACTC
TGTGTACTTCTGAGTGTCCTGGAGATGGTGGCGGGCTCCTCCTCCAATAGGAAACCACACCAGT
TCTTCCAGGGAGTAAACATGGATTAGACACCTACTGTGTGCAGCTACCTAAAAGCATCCCTTCA
TTTTACAGAAGGGGAAATGAGGTTCATAGACCTGTCTGAGGTCTCATATGGGGGCAATGGCTGT
GTAGATTCCAGGGGGCATAGTCAGAAGGCATGAGTTGGGGCAGCCTGGCATAAGTATTGTGATG
GGGCATACTAGGGGTAAGGGCTGGGCAATGCTTGGGGCCTGCCTGCAGGGGCGCAATCCAGGAC
ACCTTGATCCTGTCCACTCTGCATAGCTCCTCAGATGAAACTAACCTGAGCCACTGAGGATGAC
AAGTCCCAGGCCACTTGCAGGCCAGGAGTCTCCTAGGAAGATGTCTTCCAACAGAGAGGACCAC
ATGTGTGGAGTTTGTAGTAAAAGTAGATCAGCTAGGGCTTGAACGCAGGCCTCGGGCTCAATAG
GCATGGATCTCACTCAGTCCCACTCCACAGTTGGGCCCCTAACTCCCTGGTATTTTTTGTTTTC
CAAGGCTGGGTTTCTCTGTTTAGCACTATCCTTAAACTCACTATATAGACCA

hide sequence

RefSeq Acc Id:

NR_122030

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,823,942 - 71,826,333 (+)	NCBI
GRCm38	8	71,371,298 - 71,373,689 (+)	NCBI
Celera	8	73,895,968 - 73,898,359 (+)	NCBI

Sequence:

show sequence

CCCGCCCTAGCGGCCGAGCGCCCGTGCCAACGGCTCCACCCGCAGTTCCTGCACAGCTGCGTTC
CCGGCGGCAGGGCCAGACGGGGCTCTGGGACAGGTGACACCGAGTGGGATCCTCGGATAACCAC
AGGCGGGCGGGGGCTGGAAGCTTTGTGGGCCGTAACCCCGCGAGGCAAGAGGCGAAGGGGTCGT
CTCGACTCGGACCCCAGTCGCCCTCCGCTGCTTTGCGCTCTTCCGGTTTCAAGAATGGGGCGGG
GCCCGCGCTGCACCGCCAGCCACTCTCGAGCATGACGCCGCGGTGACGTCGCGGCGCCTCGTCA
GTGCCCCTTTCCGGGATCCGCACTCTGGGTTGCGCGGCCAGCCAACCGCGCTCGCGTATGCAAA
TACATGCAGGTCCCGCCTCCAGGCGCGGCCGGCGGGGTCCTCTGGCCAGGCTCTCAGGCCCGGA
AGCCACTTGCAATTCGCGCCCTGCCGCCAGGGGGCGCCAGAGAGCTGCAGCCCCACGCATGCCT
GCCCCGGAGCGTCCGCGCTCCAGACGGCCGCAGAGCCAGCCCGGGCCGGGAGAGCTCTGCGTGA
GGCCCCGGAAGATCGTGTTTGCGGATGAGCTGCGCCCCCGGGAGCCACTGCACCCTGAGAAGCA
TCCCAGAGATCTGGGACCCCGCCTCAACCCAGTACCTGACTACGAGCTGTGAGTGCCCACTCGT
TGTAAGACCAGAAGGAGGCTCGCATGGCAGCTCATGTCAGGAGAGAGTTTGAGAAGAAGCGAGG
GGATCCTGGCTTCCTGGATAAGCAGGCTCGCTGTAACTACCTGAAGGGTAAACTCAGGCACCTC
AAGGCCCAGATCCGCAAATTTGATGACCAGCAGGACAGCAACAGTGAAGACTCTGTGTACTTCT
GAGTGTCCTGGAGATGGTGGCGGGCTCCTCCTCCAATAGGAAACCACACCAGTTCTTCCAGGGA
GTAAACATGGATTAGACACCTACTGTGTGCAGCTACCTAAAAGCATCCCTTCATTTTACAGAAG
GGGAAATGAGGTTCATAGACCTGTCTGAGGTCTCATATGGGGGCAATGGCTGTGTAGATTCCAG
GGGGCATAGTCAGAAGGCATGAGTTGGGGCAGCCTGGCATAAGTATTGTGATGGGGCATACTAG
GGGTAAGGGCTGGGCAATGCTTGGGGCCTGCCTGCAGGGGCGCAATCCAGGACACCTTGATCCT
GTCCACTCTGCATAGCTCCTCAGATGAAACTAACCTGAGCCACTGAGGATGACAAGTCCCAGGC
CACTTGCAGGCCAGGAGTCTCCTAGGAAGATGTCTTCCAACAGAGAGGACCACATGTGTGGAGT
TTGTAGTAAAAGTAGATCAGCTAGGGCTTGAACGCAGGCCTCGGGCTCAATAGGCATGGATCTC
ACTCAGTCCCACTCCACAGTTGGGCCCCTAACTCCCTGGTATTTTTTGTTTTCCAAGGCTGGGT
TTCTCTGTTTAGCACTATCCTTAAACTCACTATATAGACCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001280729	(Get FASTA)	NCBI Sequence Viewer
	NP_084141	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH19407	(Get FASTA)	NCBI Sequence Viewer
	BAB32126	(Get FASTA)	NCBI Sequence Viewer
	BAE33130	(Get FASTA)	NCBI Sequence Viewer
	EDL28907	(Get FASTA)	NCBI Sequence Viewer
	EDL28908	(Get FASTA)	NCBI Sequence Viewer
	EDL28909	(Get FASTA)	NCBI Sequence Viewer
	Q8VCR9	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_084141 ⟸ NM_029865
- Peptide Label:	isoform 1
- UniProtKB:	Q8VCR9 (UniProtKB/Swiss-Prot), G5E815 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQIHAGPASRRGRRGPLARLSGPEATCNSRPAARGRQRAAAPRMPAPERPRSRRPQSQPGPGEL CVRPRKIVFADELRPREPLHPEKHPRDLGPRLNPVPDYELKYPPVTNRRDRSRYAAVFQDQYGE FSELQREVGATQAKLQQLEALLLSLPPPRSQKEARMAAHVRREFEKKRGDPGFLDKQARCNYLK GKLRHLKAQIRKFDDQQDSNSEDSVYF hide sequence

RefSeq Acc Id:	NP_001280729 ⟸ NM_001293800
- Peptide Label:	isoform 2
- UniProtKB:	D3Z3P2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQIHAGPASRRGRRGPLARLSGPEATCNSRPAARGRQRAAAPRMPAPERPRSRRPQSQPGPGEL CVRPRKIVFADELRPREPLHPEKHPRDLGPRLNPVPDYELRRLAWQLMSGESLRRSEGILASWI SRLAVTT hide sequence

RefSeq Acc Id:

ENSMUSP00000105678 ⟸ ENSMUST00000110051

RefSeq Acc Id:

ENSMUSP00000105679 ⟸ ENSMUST00000110052

RefSeq Acc Id:

ENSMUSP00000002469 ⟸ ENSMUST00000002469

Promoters

RGD ID:

8667383

Promoter ID:

EPDNEW_M11723

Type:

initiation region

Name:

Ocel1_1

Description:

Mus musculus occludin/ELL domain containing 1 , transcript variant2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	71,371,341 - 71,371,401	EPDNEW

RGD ID:

6843567

Promoter ID:

MM_KWN:54772

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000110051, ENSMUST00000110052, OTTMUST00000052806, OTTMUST00000052809

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	73,894,701 - 73,896,082 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1924340	AgrOrtholog
Ensembl Genes	ENSMUSG00000002396	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000002469	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000105678	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000105679	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000002469	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000110051	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000110052	UniProtKB/TrEMBL
InterPro	ELL/occludin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Occludin_ELL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ocel1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:77090	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1924340	ENTREZGENE
NCBI Gene	77090	ENTREZGENE
PANTHER	PTHR23288	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR23288:SF15	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Occludin_ELL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ocel1	PhenoGen
UniGene	Mm.440170	ENTREZGENE
UniProt	D3Z3P1_MOUSE	UniProtKB/TrEMBL
	D3Z3P2	ENTREZGENE, UniProtKB/TrEMBL
	G5E815	ENTREZGENE, UniProtKB/TrEMBL
	OCEL1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q3U2L0	UniProtKB/Swiss-Prot
	Q9CX17	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-28	Ocel1	occludin/ELL domain containing 1	AI326022	expressed sequence AI326022	Data Merged	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)