Ocel1 (occludin/ELL domain containing 1) - Rat Genome Database
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Gene: Ocel1 (occludin/ELL domain containing 1) Mus musculus
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Symbol: Ocel1
Name: occludin/ELL domain containing 1
RGD ID: 1558555
MGI Page MGI
Description: Orthologous to human OCEL1 (occludin/ELL domain containing 1); INTERACTS WITH benzo[a]pyrene; clofibrate; cobalt dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 9430098E02Rik; AI326022; AI593544; expressed sequence AI326022; occludin/ELL domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,823,942 - 71,826,333 (+)NCBIGRCm39mm39
GRCm38871,371,298 - 71,373,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,371,298 - 71,379,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,895,197 - 73,897,588 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,300,343 - 74,302,147 (+)NCBImm8
Celera873,895,968 - 73,898,359 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Comparative Map Data
Ocel1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,823,942 - 71,826,333 (+)NCBIGRCm39mm39
GRCm38871,371,298 - 71,373,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,371,298 - 71,379,361 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,895,197 - 73,897,588 (+)NCBIGRCm37mm9NCBIm37
MGSCv36874,300,343 - 74,302,147 (+)NCBImm8
Celera873,895,968 - 73,898,359 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
OCEL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,226,213 - 17,229,219 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,226,226 - 17,229,219 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,337,040 - 17,340,028 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,198,055 - 17,201,028 (+)NCBINCBI36hg18NCBI36
Celera1917,238,595 - 17,241,568 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,904,380 - 16,907,353 (+)NCBIHuRef
CHM1_11917,336,557 - 17,339,572 (+)NCBICHM1_1
Ocel1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01619,766,728 - 19,769,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,767,264 - 19,769,033 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,627,362 - 19,629,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,532,477 - 18,534,246 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1618,250,881 - 18,252,650 (+)NCBICelera
Cytogenetic Map16p14NCBI
Ocel1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955524966,191 - 967,961 (-)NCBIChiLan1.0ChiLan1.0
OCEL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,687,441 - 17,690,447 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,687,441 - 17,690,447 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01916,713,136 - 16,716,252 (+)NCBIMhudiblu_PPA_v0panPan3
OCEL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,502,217 - 45,504,830 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,502,862 - 45,505,250 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ocel1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,608,468 - 3,610,102 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OCEL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,442,210 - 60,445,008 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,442,203 - 60,445,016 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,088,540 - 60,091,352 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OCEL1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,720,620 - 15,724,276 (+)NCBI
Ocel1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908681,457 - 683,307 (-)NCBI

Position Markers
AI326022  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,379,169 - 71,379,314UniSTSGRCm38
MGSCv37873,903,068 - 73,903,213UniSTSGRCm37
Celera873,903,839 - 73,903,984UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8763.41UniSTS
AI593544  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,372,827 - 71,372,973UniSTSGRCm38
MGSCv37873,896,726 - 73,896,872UniSTSGRCm37
Celera873,897,497 - 73,897,643UniSTS
Cytogenetic Map8C1UniSTS
Whitehead/MRC_RH8764.73UniSTS
AV090102  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,198 - 71,374,306UniSTSGRCm38
MGSCv37873,898,097 - 73,898,205UniSTSGRCm37
Celera873,898,868 - 73,898,976UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8766.95UniSTS
X76654  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,149 - 71,374,305UniSTSGRCm38
MGSCv37873,898,048 - 73,898,204UniSTSGRCm37
Celera873,898,819 - 73,898,975UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8764.06UniSTS
Whitehead_YAC8 UniSTS
X76654  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,374,198 - 71,374,297UniSTSGRCm38
MGSCv37873,898,097 - 73,898,196UniSTSGRCm37
Celera873,898,868 - 73,898,967UniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8764.06UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2771
Count of miRNA genes:837
Interacting mature miRNAs:1143
Transcripts:ENSMUST00000002469, ENSMUST00000110051, ENSMUST00000110052, ENSMUST00000126049
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000002469   ⟹   ENSMUSP00000002469
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,371,339 - 71,373,689 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110051   ⟹   ENSMUSP00000105678
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,371,298 - 71,374,382 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110052   ⟹   ENSMUSP00000105679
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,371,346 - 71,379,361 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126049
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,372,473 - 71,372,955 (+)Ensembl
RefSeq Acc Id: NM_001293800   ⟹   NP_001280729
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,823,942 - 71,826,333 (+)NCBI
GRCm38871,371,298 - 71,373,689 (+)NCBI
Celera873,895,968 - 73,898,359 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029865   ⟹   NP_084141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,823,942 - 71,826,333 (+)NCBI
GRCm38871,371,298 - 71,373,689 (+)ENTREZGENE
MGSCv37873,895,197 - 73,897,588 (+)RGD
Celera873,895,968 - 73,898,359 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_122030
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,823,942 - 71,826,333 (+)NCBI
GRCm38871,371,298 - 71,373,689 (+)NCBI
Celera873,895,968 - 73,898,359 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_084141   ⟸   NM_029865
- Peptide Label: isoform 1
- UniProtKB: Q8VCR9 (UniProtKB/Swiss-Prot),   G5E815 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001280729   ⟸   NM_001293800
- Peptide Label: isoform 2
- UniProtKB: D3Z3P2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000105678   ⟸   ENSMUST00000110051
RefSeq Acc Id: ENSMUSP00000105679   ⟸   ENSMUST00000110052
RefSeq Acc Id: ENSMUSP00000002469   ⟸   ENSMUST00000002469

Promoters
RGD ID:8667383
Promoter ID:EPDNEW_M11723
Type:initiation region
Name:Ocel1_1
Description:Mus musculus occludin/ELL domain containing 1 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,371,341 - 71,371,401EPDNEW
RGD ID:6843567
Promoter ID:MM_KWN:54772
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000110051,   ENSMUST00000110052,   OTTMUST00000052806,   OTTMUST00000052809
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,894,701 - 73,896,082 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924340 AgrOrtholog
Ensembl Genes ENSMUSG00000002396 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000002469 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105678 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000105679 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002469 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000110051 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000110052 UniProtKB/TrEMBL
InterPro ELL/occludin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Occludin_ELL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ocel1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77090 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1924340 ENTREZGENE
NCBI Gene 77090 ENTREZGENE
PANTHER PTHR23288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23288:SF15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Occludin_ELL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ocel1 PhenoGen
UniGene Mm.440170 ENTREZGENE
UniProt D3Z3P1_MOUSE UniProtKB/TrEMBL
  D3Z3P2 ENTREZGENE, UniProtKB/TrEMBL
  G5E815 ENTREZGENE, UniProtKB/TrEMBL
  OCEL1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3U2L0 UniProtKB/Swiss-Prot
  Q9CX17 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-28 Ocel1  occludin/ELL domain containing 1  AI326022  expressed sequence AI326022  Data Merged 737654 PROVISIONAL