Usp4 (ubiquitin specific peptidase 4 (proto-oncogene)) - Rat Genome Database

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Gene: Usp4 (ubiquitin specific peptidase 4 (proto-oncogene)) Mus musculus
Analyze
Symbol: Usp4
Name: ubiquitin specific peptidase 4 (proto-oncogene)
RGD ID: 1558494
MGI Page MGI
Description: Predicted to enable adenosine receptor binding activity; cysteine-type deubiquitinase activity; and identical protein binding activity. Predicted to be involved in several processes, including positive regulation of TORC1 signaling; protein localization to cell surface; and spliceosomal tri-snRNP complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be located in cytosol and plasma membrane. Predicted to be active in nucleus. Is expressed in facial prominence ectoderm and facial prominence mesenchyme. Orthologous to human USP4 (ubiquitin specific peptidase 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: deubiquitinating enzyme 4; F730026I20Rik; KIAA4155; mKIAA4155; U; ubiquitin carboxyl-terminal hydrolase 4; ubiquitin specific protease 4 (proto-oncogene); ubiquitin thioesterase 4; ubiquitin thiolesterase 4; ubiquitin-specific-processing protease 4; ubiquitous nuclear protein; Unp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,223,763 - 108,269,744 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,225,052 - 108,269,744 (+)EnsemblGRCm39 Ensembl
GRCm389108,346,564 - 108,392,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,250,162 - 108,294,860 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,205,963 - 108,250,621 (+)NCBIMGSCv36mm8
Celera9107,957,048 - 108,001,736 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (IBA,ISO)
plasma membrane  (ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Fv2 encodes a truncated form of the Stk receptor tyrosine kinase. Persons DA, etal., Nat Genet 1999 Oct;23(2):159-65.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8183569   PMID:8336951   PMID:8889548   PMID:9602026   PMID:10349636   PMID:10464095   PMID:10922068   PMID:11018721   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11571651  
PMID:12477932   PMID:14610273   PMID:15494318   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16783635   PMID:18799693   PMID:21267068   PMID:21522127   PMID:21677750   PMID:21873635  
PMID:22262844   PMID:22706160   PMID:24721909   PMID:26503449   PMID:26811477   PMID:28190767   PMID:28336234   PMID:28468752   PMID:29573006   PMID:30194441   PMID:30333137   PMID:30362572  
PMID:30514904   PMID:30622220   PMID:30901874   PMID:30973865   PMID:31173246   PMID:32253237   PMID:34144056   PMID:38134227  


Genomics

Comparative Map Data
Usp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,223,763 - 108,269,744 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,225,052 - 108,269,744 (+)EnsemblGRCm39 Ensembl
GRCm389108,346,564 - 108,392,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,250,162 - 108,294,860 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,205,963 - 108,250,621 (+)NCBIMGSCv36mm8
Celera9107,957,048 - 108,001,736 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.25NCBI
USP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,277,144 - 49,340,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,277,144 - 49,340,712 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,314,577 - 49,377,486 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,289,997 - 49,352,519 (-)NCBINCBI36Build 36hg18NCBI36
Build 34349,289,997 - 49,352,519NCBI
Celera349,278,021 - 49,342,350 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,371,896 - 49,436,532 (-)NCBIHuRef
CHM1_1349,267,379 - 49,330,367 (-)NCBICHM1_1
T2T-CHM13v2.0349,305,224 - 49,369,431 (-)NCBIT2T-CHM13v2.0
Usp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,912,576 - 117,957,934 (+)NCBIGRCr8
mRatBN7.28109,035,402 - 109,079,382 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,036,099 - 109,080,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,663,178 - 114,706,678 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,862,508 - 112,906,009 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,705,153 - 110,748,655 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,126,692 - 117,171,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,126,692 - 117,171,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,474,812 - 116,519,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,338,833 - 108,383,118 (+)NCBICelera
Cytogenetic Map8q32NCBI
Usp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,247,110 - 1,285,121 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,247,110 - 1,284,564 (-)NCBIChiLan1.0ChiLan1.0
LOC100967331
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,253,962 - 49,320,547 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,258,730 - 49,325,329 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,199,328 - 49,263,861 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,279,642 - 50,343,901 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,279,642 - 50,343,903 (-)Ensemblpanpan1.1panPan2
USP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,899,880 - 39,952,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,899,897 - 39,952,420 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,818,226 - 39,871,287 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02040,256,219 - 40,309,777 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,256,236 - 40,309,829 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,623,674 - 39,676,723 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,027,139 - 40,080,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,306,950 - 40,360,016 (+)NCBIUU_Cfam_GSD_1.0
Usp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,180,540 - 64,229,266 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529938,501 - 989,884 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936529941,042 - 989,781 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,848,851 - 31,904,243 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,844,780 - 31,904,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,799 - 35,135,425 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,672,920 - 10,735,374 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,672,388 - 10,732,104 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041156,278,755 - 156,354,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,253,407 - 3,306,341 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,252,980 - 3,306,439 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Usp4
1365 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:185
Interacting mature miRNAs:190
Transcripts:ENSMUST00000035237
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985779563108518385Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse

Markers in Region
AW555420  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,392,186 - 108,392,268UniSTSGRCm38
MGSCv379108,294,517 - 108,294,599UniSTSGRCm37
Celera9108,001,393 - 108,001,475UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
Whitehead/MRC_RH91109.71UniSTS
Usp4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,392,079 - 108,392,270UniSTSGRCm38
MGSCv379108,294,410 - 108,294,601UniSTSGRCm37
Celera9108,001,286 - 108,001,477UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF026469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB770947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE982062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY322979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA548182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD741063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK624008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L00681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035237   ⟹   ENSMUSP00000035237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,225,052 - 108,269,744 (+)Ensembl
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,233,653 - 108,235,139 (+)Ensembl
GRCm38.p6 Ensembl9108,356,454 - 108,357,940 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,225,096 - 108,235,024 (+)Ensembl
GRCm38.p6 Ensembl9108,347,897 - 108,357,825 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193288   ⟹   ENSMUSP00000141612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,249,892 - 108,269,458 (+)Ensembl
GRCm38.p6 Ensembl9108,372,693 - 108,392,259 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,237,043 - 108,240,061 (+)Ensembl
GRCm38.p6 Ensembl9108,359,844 - 108,362,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194065
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,245,123 - 108,247,441 (+)Ensembl
GRCm38.p6 Ensembl9108,367,924 - 108,370,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194224   ⟹   ENSMUSP00000141321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,225,073 - 108,263,102 (+)Ensembl
GRCm38.p6 Ensembl9108,347,874 - 108,385,903 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,268,075 - 108,269,444 (+)Ensembl
GRCm38.p6 Ensembl9108,390,876 - 108,392,245 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194959   ⟹   ENSMUSP00000141368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,225,112 - 108,269,719 (+)Ensembl
GRCm38.p6 Ensembl9108,347,913 - 108,392,520 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195608   ⟹   ENSMUSP00000141411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,258,570 - 108,268,991 (+)Ensembl
GRCm38.p6 Ensembl9108,381,371 - 108,391,792 (+)Ensembl
RefSeq Acc Id: NM_001311157   ⟹   NP_001298086
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,225,030 - 108,269,744 (+)NCBI
GRCm389108,347,831 - 108,392,545 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011678   ⟹   NP_035808
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,225,030 - 108,269,728 (+)NCBI
GRCm389108,347,831 - 108,392,529 (+)NCBI
MGSCv379108,250,162 - 108,294,860 (+)RGD
Celera9107,957,048 - 108,001,736 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511696   ⟹   XP_006511759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511697   ⟹   XP_006511760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511699   ⟹   XP_006511762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511700   ⟹   XP_006511763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035808   ⟸   NM_011678
- Peptide Label: isoform 1
- UniProtKB: O54704 (UniProtKB/Swiss-Prot),   Q8BTL9 (UniProtKB/Swiss-Prot),   P35123 (UniProtKB/Swiss-Prot),   Q3TEX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511762   ⟸   XM_006511699
- Peptide Label: isoform X3
- UniProtKB: Q3TEX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511763   ⟸   XM_006511700
- Peptide Label: isoform X4
- UniProtKB: Q3TEX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511759   ⟸   XM_006511696
- Peptide Label: isoform X1
- UniProtKB: Q3TEX8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511760   ⟸   XM_006511697
- Peptide Label: isoform X2
- UniProtKB: Q921M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001298086   ⟸   NM_001311157
- Peptide Label: isoform 2
- UniProtKB: A0A0A6YW28 (UniProtKB/TrEMBL),   Q921M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000141321   ⟸   ENSMUST00000194224
RefSeq Acc Id: ENSMUSP00000141612   ⟸   ENSMUST00000193288
RefSeq Acc Id: ENSMUSP00000035237   ⟸   ENSMUST00000035237
RefSeq Acc Id: ENSMUSP00000141411   ⟸   ENSMUST00000195608
RefSeq Acc Id: ENSMUSP00000141368   ⟸   ENSMUST00000194959
Protein Domains
DUSP   Ubiquitin-like   USP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P35123-F1-model_v2 AlphaFold P35123 1-962 view protein structure

Promoters
RGD ID:6844806
Promoter ID:MM_KWN:58787
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000076375,   NM_011678,   UC009RPG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,249,306 - 108,250,347 (+)MPROMDB
RGD ID:6844811
Promoter ID:MM_KWN:58789
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC009RPJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,274,936 - 108,275,436 (+)MPROMDB
RGD ID:8670884
Promoter ID:EPDNEW_M13473
Type:initiation region
Name:Usp4_1
Description:Mus musculus ubiquitin specific peptidase 4 (proto-oncogene), transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,347,911 - 108,347,971EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98905 AgrOrtholog
Ensembl Genes ENSMUSG00000032612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035237 ENTREZGENE
  ENSMUST00000035237.12 UniProtKB/Swiss-Prot
  ENSMUST00000193288.6 UniProtKB/TrEMBL
  ENSMUST00000194224 ENTREZGENE
  ENSMUST00000194224.6 UniProtKB/TrEMBL
  ENSMUST00000194959 ENTREZGENE
  ENSMUST00000194959.6 UniProtKB/TrEMBL
  ENSMUST00000195608.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2230.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cysteine proteinases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DUSP-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C19_DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ub_USP-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22258 UniProtKB/Swiss-Prot
MGD MGI:98905 ENTREZGENE
NCBI Gene 22258 ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Usp4 PhenoGen
PROSITE DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF143791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A6YVY7_MOUSE UniProtKB/TrEMBL
  A0A0A6YW28 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YW63_MOUSE UniProtKB/TrEMBL
  A0A0A6YWM7_MOUSE UniProtKB/TrEMBL
  O54704 ENTREZGENE
  P35123 ENTREZGENE
  Q3TEX8 ENTREZGENE, UniProtKB/TrEMBL
  Q3TPN5_MOUSE UniProtKB/TrEMBL
  Q3TQZ9_MOUSE UniProtKB/TrEMBL
  Q5DTK8_MOUSE UniProtKB/TrEMBL
  Q6NXV6_MOUSE UniProtKB/TrEMBL
  Q8BTL9 ENTREZGENE
  Q921M8 ENTREZGENE, UniProtKB/TrEMBL
  UBP4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O54704 UniProtKB/Swiss-Prot
  Q8BTL9 UniProtKB/Swiss-Prot