Usp4 (ubiquitin specific peptidase 4 (proto-oncogene)) - Rat Genome Database
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Gene: Usp4 (ubiquitin specific peptidase 4 (proto-oncogene)) Mus musculus
Analyze
Symbol: Usp4
Name: ubiquitin specific peptidase 4 (proto-oncogene)
RGD ID: 1558494
MGI Page MGI
Description: Predicted to have adenosine receptor binding activity; identical protein binding activity; and thiol-dependent ubiquitin-specific protease activity. Predicted to be involved in several processes, including negative regulation of protein ubiquitination; protein localization to cell surface; and spliceosomal tri-snRNP complex assembly. Predicted to localize to cytosol; nucleus; and plasma membrane. Orthologous to human USP4 (ubiquitin specific peptidase 4); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: deubiquitinating enzyme 4; F730026I20Rik; KIAA4155; mKIAA4155; U; ubiquitin carboxyl-terminal hydrolase 4; ubiquitin specific protease 4 (proto-oncogene); ubiquitin thioesterase 4; ubiquitin thiolesterase 4; ubiquitin-specific-processing protease 4; ubiquitous nuclear protein; Unp
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,223,763 - 108,269,744 (+)NCBIGRCm39mm39
GRCm389108,346,564 - 108,392,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,250,162 - 108,294,860 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,205,963 - 108,250,621 (+)NCBImm8
Celera9107,957,048 - 108,001,736 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nucleus  (IBA,ISO)
plasma membrane  (ISO)

References

Additional References at PubMed
PMID:8183569   PMID:8336951   PMID:8889548   PMID:9602026   PMID:10349636   PMID:10464095   PMID:10922068   PMID:11018721   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11571651  
PMID:12477932   PMID:14610273   PMID:15494318   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16783635   PMID:18799693   PMID:21267068   PMID:21522127   PMID:21677750   PMID:21873635  
PMID:22262844   PMID:22706160   PMID:24721909   PMID:26503449   PMID:26811477   PMID:28190767   PMID:28336234   PMID:28468752   PMID:29573006   PMID:30194441   PMID:30333137   PMID:30362572  
PMID:30622220   PMID:30901874   PMID:31173246   PMID:32253237  


Genomics

Comparative Map Data
Usp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,223,763 - 108,269,744 (+)NCBIGRCm39mm39
GRCm389108,346,564 - 108,392,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,250,162 - 108,294,860 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,205,963 - 108,250,621 (+)NCBImm8
Celera9107,957,048 - 108,001,736 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.25NCBI
USP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,277,144 - 49,340,712 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,277,144 - 49,340,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,314,577 - 49,377,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,289,997 - 49,352,519 (-)NCBINCBI36hg18NCBI36
Build 34349,289,997 - 49,352,519NCBI
Celera349,278,021 - 49,342,350 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,371,896 - 49,436,532 (-)NCBIHuRef
CHM1_1349,267,379 - 49,330,367 (-)NCBICHM1_1
Usp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08117,126,692 - 117,171,012 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,126,692 - 117,171,012 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,474,812 - 116,519,375 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,338,833 - 108,383,118 (+)NCBICelera
Cytogenetic Map8q32NCBI
Usp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,247,110 - 1,285,121 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,247,110 - 1,284,564 (-)NCBIChiLan1.0ChiLan1.0
LOC100967331
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,279,642 - 50,343,901 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,279,642 - 50,343,903 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,199,328 - 49,263,861 (-)NCBIMhudiblu_PPA_v0panPan3
USP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,899,897 - 39,952,420 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,899,880 - 39,952,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Usp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936529941,042 - 989,781 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,840,300 - 31,904,348 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,844,780 - 31,904,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,075,799 - 35,135,425 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2210,672,388 - 10,732,104 (-)Ensembl
ChlSab1.12210,672,920 - 10,735,374 (-)NCBI
Usp4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,252,980 - 3,306,439 (-)NCBI

Position Markers
AW555420  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,392,186 - 108,392,268UniSTSGRCm38
MGSCv379108,294,517 - 108,294,599UniSTSGRCm37
Celera9108,001,393 - 108,001,475UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS
Whitehead/MRC_RH91109.71UniSTS
Usp4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389108,392,079 - 108,392,270UniSTSGRCm38
MGSCv379108,294,410 - 108,294,601UniSTSGRCm37
Celera9108,001,286 - 108,001,477UniSTS
Cytogenetic Map9F2UniSTS
cM Map960.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:213
Count of miRNA genes:185
Interacting mature miRNAs:190
Transcripts:ENSMUST00000035237
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF026469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB770947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE982062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY322979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA548182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD741063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK624008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L00681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035237   ⟹   ENSMUSP00000035237
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,347,853 - 108,392,545 (+)Ensembl
RefSeq Acc Id: ENSMUST00000192750
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,356,454 - 108,357,940 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,347,897 - 108,357,825 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193288   ⟹   ENSMUSP00000141612
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,372,693 - 108,392,259 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194034
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,359,844 - 108,362,862 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194065
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,367,924 - 108,370,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194224   ⟹   ENSMUSP00000141321
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,347,874 - 108,385,903 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194939
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,390,876 - 108,392,245 (+)Ensembl
RefSeq Acc Id: ENSMUST00000194959   ⟹   ENSMUSP00000141368
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,347,913 - 108,392,520 (+)Ensembl
RefSeq Acc Id: ENSMUST00000195608   ⟹   ENSMUSP00000141411
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,381,371 - 108,391,792 (+)Ensembl
RefSeq Acc Id: NM_001311157   ⟹   NP_001298086
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,225,030 - 108,269,744 (+)NCBI
GRCm389108,347,831 - 108,392,545 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011678   ⟹   NP_035808
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,225,030 - 108,269,728 (+)NCBI
GRCm389108,347,831 - 108,392,529 (+)NCBI
MGSCv379108,250,162 - 108,294,860 (+)RGD
Celera9107,957,048 - 108,001,736 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511696   ⟹   XP_006511759
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511697   ⟹   XP_006511760
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511699   ⟹   XP_006511762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006511700   ⟹   XP_006511763
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,223,763 - 108,269,725 (+)NCBI
GRCm389108,346,564 - 108,392,526 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035808   ⟸   NM_011678
- Peptide Label: isoform 1
- UniProtKB: P35123 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511762   ⟸   XM_006511699
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006511763   ⟸   XM_006511700
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006511759   ⟸   XM_006511696
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006511760   ⟸   XM_006511697
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001298086   ⟸   NM_001311157
- Peptide Label: isoform 2
- UniProtKB: A0A0A6YW28 (UniProtKB/TrEMBL),   Q3TPN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000141321   ⟸   ENSMUST00000194224
RefSeq Acc Id: ENSMUSP00000141612   ⟸   ENSMUST00000193288
RefSeq Acc Id: ENSMUSP00000035237   ⟸   ENSMUST00000035237
RefSeq Acc Id: ENSMUSP00000141411   ⟸   ENSMUST00000195608
RefSeq Acc Id: ENSMUSP00000141368   ⟸   ENSMUST00000194959
Protein Domains
DUSP   Ubiquitin-like   USP

Promoters
RGD ID:6844806
Promoter ID:MM_KWN:58787
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000076375,   NM_011678,   UC009RPG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,249,306 - 108,250,347 (+)MPROMDB
RGD ID:6844811
Promoter ID:MM_KWN:58789
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC009RPJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,274,936 - 108,275,436 (+)MPROMDB
RGD ID:8670884
Promoter ID:EPDNEW_M13473
Type:initiation region
Name:Usp4_1
Description:Mus musculus ubiquitin specific peptidase 4 (proto-oncogene), transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,347,911 - 108,347,971EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98905 AgrOrtholog
Ensembl Genes ENSMUSG00000032612 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000035237 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000141321 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141368 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000141411 UniProtKB/TrEMBL
  ENSMUSP00000141612 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035237 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000193288 UniProtKB/TrEMBL
  ENSMUST00000194224 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000194959 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000195608 UniProtKB/TrEMBL
InterPro DUSP-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C19_DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ub_USP-typ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22258 UniProtKB/Swiss-Prot
MGD MGI:98905 ENTREZGENE
NCBI Gene 22258 ENTREZGENE
Pfam DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Usp4 PhenoGen
PROSITE DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DUSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF143791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.3974 ENTREZGENE
UniProt A0A0A6YVY7_MOUSE UniProtKB/TrEMBL
  A0A0A6YW28 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YW63_MOUSE UniProtKB/TrEMBL
  A0A0A6YWM7_MOUSE UniProtKB/TrEMBL
  P35123 ENTREZGENE
  Q3TEX8_MOUSE UniProtKB/TrEMBL
  Q3TPN5 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQZ9_MOUSE UniProtKB/TrEMBL
  Q5DTK8_MOUSE UniProtKB/TrEMBL
  Q6NXV6_MOUSE UniProtKB/TrEMBL
  Q921M8_MOUSE UniProtKB/TrEMBL
  UBP4_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary O54704 UniProtKB/Swiss-Prot
  Q8BTL9 UniProtKB/Swiss-Prot