Naa38 (N(alpha)-acetyltransferase 38, NatC auxiliary subunit) - Rat Genome Database
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Gene: Naa38 (N(alpha)-acetyltransferase 38, NatC auxiliary subunit) Mus musculus
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Symbol: Naa38
Name: N(alpha)-acetyltransferase 38, NatC auxiliary subunit
RGD ID: 1558416
MGI Page MGI
Description: Predicted to be involved in negative regulation of apoptotic process. Predicted to colocalize with polysome. Orthologous to human NAA38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1500034E06Rik; Lsm; LSM domain containing 1; LSM domain-containing protein 1; Lsmd1; MAK31-like protein; N-alpha-acetyltransferase 38, NatC auxiliary subunit; novel LSM domain-containing protein; RP23-5O23.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,286,617 - 69,287,497 (+)NCBIGRCm39mm39
GRCm381169,395,791 - 69,396,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,395,487 - 69,396,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,209,293 - 69,210,173 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,211,986 - 69,212,866 (+)NCBImm8
Celera1176,350,281 - 76,351,161 (+)NCBICelera
Cytogenetic Map11B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
NatC complex  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)
polysome  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Comparative Map Data
Naa38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,286,617 - 69,287,497 (+)NCBIGRCm39mm39
GRCm381169,395,791 - 69,396,671 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,395,487 - 69,396,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371169,209,293 - 69,210,173 (+)NCBIGRCm37mm9NCBIm37
MGSCv361169,211,986 - 69,212,866 (+)NCBImm8
Celera1176,350,281 - 76,351,161 (+)NCBICelera
Cytogenetic Map11B3NCBI
NAA38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,856,685 - 7,885,238 (-)EnsemblGRCh38hg38GRCh38
GRCh38177,856,685 - 7,885,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,759,999 - 7,788,738 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37177,760,003 - 7,788,608 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,700,728 - 7,701,897 (-)NCBINCBI36hg18NCBI36
Celera177,787,824 - 7,788,993 (-)NCBI
Cytogenetic Map17p13.1NCBI
HuRef177,654,716 - 7,655,885 (-)NCBIHuRef
CHM1_1177,768,978 - 7,770,184 (-)NCBICHM1_1
Naa38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21054,117,754 - 54,118,913 (+)NCBI
Rnor_6.0 Ensembl1055,997,614 - 55,998,691 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01055,997,614 - 55,998,691 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01055,711,455 - 55,740,766 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,190,119 - 56,191,724 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1053,274,333 - 53,275,410 (+)NCBICelera
Cytogenetic Map10q24NCBI
Naa38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,082,244 - 9,082,977 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,082,104 - 9,083,024 (+)NCBIChiLan1.0ChiLan1.0
NAA38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1177,878,102 - 7,904,823 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,878,102 - 7,887,932 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0177,891,617 - 7,921,183 (-)NCBIMhudiblu_PPA_v0panPan3
NAA38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl532,712,805 - 32,713,600 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1532,712,799 - 32,714,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Naa38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365951,100,774 - 1,101,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAA38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11253,111,249 - 53,112,487 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,477,354 - 55,478,619 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAA38
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,244,221 - 7,245,410 (-)NCBI
ChlSab1.1 Ensembl167,244,227 - 7,245,081 (-)Ensembl
Naa38
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478610,436,970 - 10,437,882 (-)NCBI

Position Markers
BB398132  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38618,853,866 - 18,853,987UniSTSGRCm38
MGSCv37618,803,866 - 18,803,987UniSTSGRCm37
Celera618,921,006 - 18,921,127UniSTS
Cytogenetic Map6A2UniSTS
Whitehead/MRC_RH8497.68UniSTS
AW214405  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38618,853,665 - 18,853,751UniSTSGRCm38
MGSCv37618,803,665 - 18,803,751UniSTSGRCm37
Celera618,920,805 - 18,920,891UniSTS
Cytogenetic Map6A2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116910000072600000Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116910000072600000Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116910000072600000Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116910000072600000Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116910000072600000Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116910000072600000Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116910000072600000Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116910000072600000Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116910000072600000Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116910000072600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:913
Count of miRNA genes:420
Interacting mature miRNAs:461
Transcripts:ENSMUST00000056398, ENSMUST00000082283, ENSMUST00000124932, ENSMUST00000128526, ENSMUST00000136982, ENSMUST00000142126, ENSMUST00000144531
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000082283
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,395,814 - 69,396,680 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,396,118 - 69,396,680 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142126
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,395,487 - 69,396,324 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144531   ⟹   ENSMUSP00000123155
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1169,395,647 - 69,396,680 (+)Ensembl
RefSeq Acc Id: NM_030083   ⟹   NP_084359
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,286,617 - 69,287,497 (+)NCBI
GRCm381169,395,791 - 69,396,671 (+)ENTREZGENE
MGSCv371169,209,293 - 69,210,173 (+)RGD
Celera1176,350,281 - 76,351,161 (+)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_084359 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48499 (Get FASTA)   NCBI Sequence Viewer  
  AAH62267 (Get FASTA)   NCBI Sequence Viewer  
  BAB31406 (Get FASTA)   NCBI Sequence Viewer  
  EDL10498 (Get FASTA)   NCBI Sequence Viewer  
  Q9D2U5 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_084359   ⟸   NM_030083
- UniProtKB: Q9D2U5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000123155   ⟸   ENSMUST00000144531

Promoters
RGD ID:6821209
Promoter ID:MM_KWN:8065
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000013370,   OTTMUST00000013372,   OTTMUST00000013373,   UC007JQB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,209,056 - 69,209,807 (+)MPROMDB
RGD ID:8675174
Promoter ID:EPDNEW_M15618
Type:initiation region
Name:Naa38_1
Description:Mus musculus N-acetyltransferase 38, NatC auxiliary subunit ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,395,817 - 69,395,877EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925554 AgrOrtholog
Ensembl Genes ENSMUSG00000059278 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000123155 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000144531 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro LSM_dom_euk/arc UniProtKB/Swiss-Prot
  LSM_dom_sf UniProtKB/Swiss-Prot
  LSMD1 UniProtKB/Swiss-Prot
KEGG Report mmu:78304 UniProtKB/Swiss-Prot
MGD MGI:1925554 ENTREZGENE
NCBI Gene 78304 ENTREZGENE
PANTHER PTHR10701:SF17 UniProtKB/Swiss-Prot
Pfam LSM UniProtKB/Swiss-Prot
PhenoGen Naa38 PhenoGen
SMART SM00651 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50182 UniProtKB/Swiss-Prot
UniProt LSMD1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q05BF7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-12 Naa38  N(alpha)-acetyltransferase 38, NatC auxiliary subunit  Lsmd1  LSM domain containing 1  Symbol and/or name change 5135510 APPROVED