Rab5a (RAB5A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab5a (RAB5A, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab5a
Name: RAB5A, member RAS oncogene family
RGD ID: 1558367
MGI Page MGI
Description: Enables GTPase activity and guanyl nucleotide binding activity. Acts upstream of or within endocytosis. Located in several cellular components, including cytoplasmic vesicle; membrane raft; and ruffle. Is expressed in several structures, including 1-cell stage embryo; brain; cardiovascular system; genitourinary system; and gut. Orthologous to human RAB5A (RAB5A, member RAS oncogene family).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2410015H04Rik; AI663973; AU021172; nnyRab5a; ras-related protein Rab-5A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rab5a-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391753,786,262 - 53,814,706 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1753,786,262 - 53,814,708 (+)EnsemblGRCm39 Ensembl
GRCm381753,479,234 - 53,507,678 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1753,479,234 - 53,507,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371753,618,559 - 53,647,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361752,944,163 - 52,972,607 (+)NCBIMGSCv36mm8
Celera1756,925,059 - 56,953,192 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1727.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-ethoxyethanol  (ISO)
2-methoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
Aroclor 1254  (EXP)
arsenous acid  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (EXP)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP)
bortezomib  (ISO)
caffeine  (ISO)
chromium(6+)  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
Di-n-octyl phthalate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
enniatin  (ISO)
enzyme inhibitor  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (EXP)
haloperidol  (ISO)
ivermectin  (ISO)
melittin  (ISO)
Mesaconitine  (ISO)
metformin  (ISO)
methamphetamine  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (ISO)
nitrates  (EXP)
ozone  (ISO)
paracetamol  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP)
rotenone  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
taurine  (ISO)
thiram  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rab proteins in endocytosis and Glut4 trafficking. Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. Overview of macroautophagy regulation in mammalian cells. Mehrpour M, etal., Cell Res. 2010 Jul;20(7):748-62. Epub 2010 Jun 15.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Mammalian late vacuole protein sorting orthologues participate in early endosomal fusion and interact with the cytoskeleton. Richardson SC, etal., Mol Biol Cell 2004 Mar;15(3):1197-210. Epub 2003 Dec 10.
12. GLUT4 translocation: the last 200 nanometers. Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
Additional References at PubMed
PMID:8197185   PMID:8583936   PMID:8835543   PMID:8889548   PMID:9034150   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11092755   PMID:11266470   PMID:11773082  
PMID:11856727   PMID:12388596   PMID:12446704   PMID:12477932   PMID:12520002   PMID:12578829   PMID:14610273   PMID:15078902   PMID:15099020   PMID:15328530   PMID:15489334   PMID:15782199  
PMID:15944222   PMID:16141072   PMID:16141073   PMID:16177003   PMID:16186258   PMID:16525121   PMID:16621800   PMID:16650848   PMID:16798890   PMID:16923123   PMID:17124501   PMID:17716972  
PMID:17765678   PMID:17967808   PMID:18385674   PMID:18434594   PMID:18445119   PMID:18656450   PMID:18794329   PMID:18799693   PMID:18927250   PMID:19509052   PMID:19549681   PMID:19643732  
PMID:19690049   PMID:20169068   PMID:20534488   PMID:21266579   PMID:21327095   PMID:21419809   PMID:21677750   PMID:21873635   PMID:22037761   PMID:22493499   PMID:22622570   PMID:22783020  
PMID:22990867   PMID:23213469   PMID:23416069   PMID:23434372   PMID:23687301   PMID:23951027   PMID:24029230   PMID:24035762   PMID:24194600   PMID:24457600   PMID:24848261   PMID:25044020  
PMID:25127994   PMID:25269936   PMID:25568335   PMID:25592972   PMID:25737280   PMID:25799061   PMID:25869668   PMID:25937276   PMID:26389685   PMID:26582200   PMID:26809587   PMID:27064279  
PMID:27160897   PMID:27390154   PMID:27434733   PMID:27466336   PMID:27471254   PMID:27541856   PMID:27626380   PMID:27715385   PMID:28378742   PMID:28442548   PMID:28700664   PMID:28973536  
PMID:29056748   PMID:29158485   PMID:29222402   PMID:29875237   PMID:30068389   PMID:30550785   PMID:30590051   PMID:30792402   PMID:30985297   PMID:31300538   PMID:32037591   PMID:32051546  
PMID:32325033   PMID:32581705   PMID:36719382   PMID:36808153   PMID:38355793   PMID:38485453  


Genomics

Comparative Map Data
Rab5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391753,786,262 - 53,814,706 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1753,786,262 - 53,814,708 (+)EnsemblGRCm39 Ensembl
GRCm381753,479,234 - 53,507,678 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1753,479,234 - 53,507,680 (+)EnsemblGRCm38mm10GRCm38
MGSCv371753,618,559 - 53,647,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361752,944,163 - 52,972,607 (+)NCBIMGSCv36mm8
Celera1756,925,059 - 56,953,192 (+)NCBICelera
Cytogenetic Map17CNCBI
cM Map1727.82NCBI
RAB5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38319,947,097 - 19,985,175 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl319,947,097 - 19,985,175 (+)EnsemblGRCh38hg38GRCh38
GRCh37319,988,589 - 20,026,667 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36319,963,760 - 20,001,647 (+)NCBINCBI36Build 36hg18NCBI36
Build 34319,963,762 - 20,001,647NCBI
Celera319,929,100 - 19,967,199 (+)NCBICelera
Cytogenetic Map3p24.3NCBI
HuRef319,928,511 - 19,966,511 (+)NCBIHuRef
CHM1_1319,940,747 - 19,978,758 (+)NCBICHM1_1
T2T-CHM13v2.0319,951,230 - 19,989,247 (+)NCBIT2T-CHM13v2.0
Rab5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr896,720,057 - 6,749,456 (+)NCBIGRCr8
mRatBN7.296,483,906 - 6,512,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl96,484,469 - 6,512,873 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx97,630,486 - 7,658,751 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0912,788,023 - 12,816,289 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0911,952,310 - 11,980,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.095,910 - 6,065 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.095,572 - 5,722 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.491,492,864 - 1,516,405NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.191,492,865 - 1,516,405NCBI
Cytogenetic Map9q11NCBI
Rab5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543011,991,548 - 12,040,003 (+)NCBIChiLan1.0ChiLan1.0
RAB5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2219,913,592 - 19,951,348 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1319,918,359 - 19,956,115 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0319,866,110 - 19,903,701 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1320,197,067 - 20,234,579 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl320,197,067 - 20,234,579 (+)Ensemblpanpan1.1panPan2
RAB5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12323,303,650 - 23,333,571 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2323,304,940 - 23,332,206 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2323,330,152 - 23,357,439 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02323,790,486 - 23,820,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2323,788,850 - 23,819,221 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12323,503,982 - 23,531,284 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02323,569,385 - 23,596,703 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02323,815,500 - 23,842,853 (-)NCBIUU_Cfam_GSD_1.0
Rab5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118179,099,612 - 179,128,766 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647312,238,156 - 12,269,089 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647312,238,226 - 12,267,339 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl136,905,390 - 6,941,423 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1136,905,302 - 6,940,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RAB5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11564,678,910 - 64,715,228 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1564,682,723 - 64,713,928 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604137,700,148 - 37,736,488 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248215,271,246 - 5,311,469 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab5a
1020 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:241
Interacting mature miRNAs:257
Transcripts:ENSMUST00000017975
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
35673315Ari1_mantibody response to influenza 1, day 7, IgG2a+IgG2c (mouse)174731092654707028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5173897957534623Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse

Markers in Region
RH136188  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381753,702,079 - 53,702,285UniSTSGRCm38
GRCm381753,506,464 - 53,506,670UniSTSGRCm38
MGSCv371753,645,789 - 53,645,995UniSTSGRCm37
MGSCv371753,841,404 - 53,841,610UniSTSGRCm37
Celera1756,951,978 - 56,952,184UniSTS
Cytogenetic Map17CUniSTS
cM Map1732.0UniSTS
RH136456  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381753,702,096 - 53,702,285UniSTSGRCm38
GRCm381753,506,464 - 53,506,653UniSTSGRCm38
MGSCv371753,645,789 - 53,645,978UniSTSGRCm37
MGSCv371753,841,421 - 53,841,610UniSTSGRCm37
Celera1756,951,978 - 56,952,167UniSTS
Cytogenetic Map17CUniSTS
cM Map1732.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_025887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000017975   ⟹   ENSMUSP00000017975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1753,786,262 - 53,814,708 (+)Ensembl
GRCm38.p6 Ensembl1753,479,234 - 53,507,680 (+)Ensembl
Ensembl Acc Id: ENSMUST00000233347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1753,786,315 - 53,789,540 (+)Ensembl
GRCm38.p6 Ensembl1753,479,287 - 53,482,512 (+)Ensembl
RefSeq Acc Id: NM_025887   ⟹   NP_080163
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391753,786,262 - 53,814,706 (+)NCBI
GRCm381753,479,234 - 53,507,678 (+)ENTREZGENE
MGSCv371753,618,559 - 53,647,003 (+)RGD
Celera1756,925,059 - 56,953,192 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080163   ⟸   NM_025887
- UniProtKB: Q9CQD1 (UniProtKB/Swiss-Prot),   Q4VAA1 (UniProtKB/Swiss-Prot),   Q3UCX7 (UniProtKB/Swiss-Prot),   Q9DCN5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000017975   ⟸   ENSMUST00000017975

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQD1-F1-model_v2 AlphaFold Q9CQD1 1-215 view protein structure

Promoters
RGD ID:13676410
Promoter ID:EPDNEW_M22354
Type:initiation region
Name:Rab5a_1
Description:Mus musculus RAB5A, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22355  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381753,479,260 - 53,479,320EPDNEW
RGD ID:13676412
Promoter ID:EPDNEW_M22355
Type:initiation region
Name:Rab5a_2
Description:Mus musculus RAB5A, member RAS oncogene family , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22354  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381753,479,481 - 53,479,541EPDNEW
RGD ID:6828551
Promoter ID:MM_KWN:23815
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_025887
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361753,618,151 - 53,618,842 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105926 AgrOrtholog
Ensembl Genes ENSMUSG00000017831 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000017975 ENTREZGENE
  ENSMUST00000017975.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase UniProtKB/Swiss-Prot
KEGG Report mmu:271457 UniProtKB/Swiss-Prot
MGD MGI:105926 ENTREZGENE
NCBI Gene 271457 ENTREZGENE
PANTHER PTHR47978 UniProtKB/Swiss-Prot
Pfam Ras UniProtKB/Swiss-Prot
PhenoGen Rab5a PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot
PROSITE RAB UniProtKB/Swiss-Prot
SMART RAB UniProtKB/Swiss-Prot
  RAN UniProtKB/Swiss-Prot
  RAS UniProtKB/Swiss-Prot
  RHO UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt Q3UCX7 ENTREZGENE
  Q4VAA1 ENTREZGENE
  Q8CBH3_MOUSE UniProtKB/TrEMBL
  Q9CQD1 ENTREZGENE
  Q9DCN5 ENTREZGENE
  RAB5A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UCX7 UniProtKB/Swiss-Prot
  Q4VAA1 UniProtKB/Swiss-Prot
  Q9DCN5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-10 Rab5a  RAB5A, member RAS oncogene family  nnyRab5a  RAB5A, member RAS oncogene family  Symbol and/or name change 5135510 APPROVED
2012-06-26 nnyRab5a  RAB5A, member RAS oncogene family  Rab5a  RAB5A, member RAS oncogene family  Symbol and/or name change 5135510 APPROVED