Serpina6 (serine (or cysteine) peptidase inhibitor, clade A, member 6) - Rat Genome Database

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Gene: Serpina6 (serine (or cysteine) peptidase inhibitor, clade A, member 6) Mus musculus
Analyze
Symbol: Serpina6
Name: serine (or cysteine) peptidase inhibitor, clade A, member 6
RGD ID: 1558331
MGI Page MGI
Description: Enables steroid binding activity. Acts upstream of or within glucocorticoid metabolic process. Located in extracellular space. Is expressed in liver; pancreas; and pancreas tip epithelium. Used to study corticosteroid-binding globulin deficiency. Human ortholog(s) of this gene implicated in corticosteroid-binding globulin deficiency. Orthologous to human SERPINA6 (serpin family A member 6).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AI265318; AV104445; Cbg; corticosteroid binding globulin; corticosteroid-binding globulin; serine (or cysteine) proteinase inhibitor, clade A, member 6; serpin A6; transcortin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,612,889 - 103,623,477 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,612,889 - 103,623,471 (-)EnsemblGRCm39 Ensembl
GRCm3812103,646,630 - 103,657,218 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,646,630 - 103,657,212 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,884,842 - 104,895,281 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,047,682 - 104,058,121 (-)NCBIMGSCv36mm8
Celera12104,862,913 - 104,873,376 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.98NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
(S)-colchicine  (ISO)
1,2-dichloroethane  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-amino-4,6-dinitrotoluene  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
acetamide  (ISO)
aconitine  (ISO)
aflatoxin B1  (EXP,ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (ISO)
buta-1,3-diene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyproconazole  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
drospirenone  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
flutamide  (ISO)
fumonisin B1  (EXP)
glafenine  (ISO)
GW 4064  (EXP)
indometacin  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
Mitotane  (ISO)
Monobutylphthalate  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
nitrofen  (ISO)
norgestimate  (ISO)
p-toluidine  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
streptozocin  (ISO)
tetrachloromethane  (EXP,ISO)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (ISO)
Triptolide  (EXP)
valproic acid  (EXP)
vancomycin  (EXP)
withaferin A  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7916682   PMID:8039711   PMID:8786149   PMID:9173930   PMID:9226367   PMID:9383296   PMID:10049582   PMID:10349636   PMID:10509797   PMID:10591541   PMID:10725249   PMID:10922068  
PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12659817   PMID:14660441   PMID:16141072   PMID:16141073   PMID:16944957   PMID:16980625   PMID:17330941   PMID:17339433  
PMID:18297134   PMID:18554416   PMID:20022933   PMID:20969731   PMID:21267068   PMID:21873635   PMID:22930537   PMID:22996440   PMID:24048966   PMID:24172014   PMID:24246737   PMID:26741814  
PMID:31570737   PMID:33592009   PMID:34599818  


Genomics

Comparative Map Data
Serpina6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912103,612,889 - 103,623,477 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12103,612,889 - 103,623,471 (-)EnsemblGRCm39 Ensembl
GRCm3812103,646,630 - 103,657,218 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12103,646,630 - 103,657,212 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,884,842 - 104,895,281 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612104,047,682 - 104,058,121 (-)NCBIMGSCv36mm8
Celera12104,862,913 - 104,873,376 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.98NCBI
SERPINA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381494,304,248 - 94,323,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1494,304,248 - 94,323,389 (-)EnsemblGRCh38hg38GRCh38
GRCh371494,770,585 - 94,789,673 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361493,840,338 - 93,859,441 (-)NCBINCBI36Build 36hg18NCBI36
Build 341493,840,338 - 93,859,426NCBI
Celera1474,824,369 - 74,843,477 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1474,950,383 - 74,969,481 (-)NCBIHuRef
CHM1_11494,708,390 - 94,727,495 (-)NCBICHM1_1
T2T-CHM13v2.01488,531,534 - 88,550,620 (-)NCBIT2T-CHM13v2.0
Serpina6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86128,544,828 - 128,555,064 (-)NCBIGRCr8
mRatBN7.26122,780,040 - 122,790,274 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6122,780,043 - 122,790,349 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,920,505 - 122,930,725 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06123,215,781 - 123,226,001 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06122,552,673 - 122,562,896 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06127,523,948 - 127,534,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6127,523,906 - 127,534,247 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06136,742,720 - 136,752,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,911,618 - 127,921,851 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6120,260,306 - 120,270,532 (-)NCBICelera
Cytogenetic Map6q32NCBI
Serpina6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543816,356,540 - 16,380,872 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543816,356,600 - 16,380,861 (-)NCBIChiLan1.0ChiLan1.0
SERPINA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21595,461,767 - 95,480,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11494,678,417 - 94,688,646 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01474,936,724 - 74,955,799 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11494,269,299 - 94,288,391 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1494,269,299 - 94,288,391 (-)Ensemblpanpan1.1panPan2
SERPINA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1863,323,896 - 63,341,829 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl863,323,933 - 63,453,708 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha862,900,449 - 62,925,083 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0863,589,497 - 63,614,157 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl863,589,530 - 63,614,404 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1863,266,111 - 63,290,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0863,318,270 - 63,342,932 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0863,648,530 - 63,673,205 (-)NCBIUU_Cfam_GSD_1.0
LOC101973017
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864011,314,687 - 11,325,700 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367332,141,392 - 2,148,151 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367332,141,484 - 2,148,129 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERPINA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7115,535,697 - 115,554,570 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17115,535,552 - 115,554,536 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27122,544,744 - 122,563,955 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SERPINA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12472,079,084 - 72,098,549 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2472,077,274 - 72,098,154 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605359,312,190 - 59,331,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Serpina6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473410,637,515 - 10,651,033 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473410,638,031 - 10,650,297 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Serpina6
111 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:317
Count of miRNA genes:254
Interacting mature miRNAs:274
Transcripts:ENSMUST00000044159, ENSMUST00000152517
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
25394546Skmw76_mskeletal muscle weight 76, TA (mouse)12102593095106941888Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
1301742Tnfp_mtumor necrosis factor protection (mouse)Not determined12103612889103623471Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse

Markers in Region
RH127840  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812103,646,806 - 103,647,015UniSTSGRCm38
MGSCv3712104,885,016 - 104,885,225UniSTSGRCm37
Celera12104,863,087 - 104,863,296UniSTS
Cytogenetic Map12EUniSTS
cM Map1251.0UniSTS
AI265318  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812103,646,679 - 103,646,826UniSTSGRCm38
MGSCv3712104,884,889 - 104,885,036UniSTSGRCm37
Celera12104,862,960 - 104,863,107UniSTS
Cytogenetic Map12EUniSTS
cM Map1251.0UniSTS
Whitehead/MRC_RH12950.75UniSTS
Whitehead/MRC_RH12953.79UniSTS
BF388405  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812103,651,718 - 103,651,909UniSTSGRCm38
MGSCv3712104,889,928 - 104,890,119UniSTSGRCm37
Celera12104,868,023 - 104,868,214UniSTS
Cytogenetic Map12EUniSTS
cM Map1251.0UniSTS
AV104445  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812103,646,679 - 103,646,822UniSTSGRCm38
MGSCv3712104,884,889 - 104,885,032UniSTSGRCm37
Celera12104,862,960 - 104,863,103UniSTS
Cytogenetic Map12EUniSTS
cM Map1251.0UniSTS
Whitehead/MRC_RH12953.79UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000044159   ⟹   ENSMUSP00000044033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,612,889 - 103,623,471 (-)Ensembl
GRCm38.p6 Ensembl12103,646,630 - 103,657,212 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152517   ⟹   ENSMUSP00000119290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12103,620,633 - 103,623,361 (-)Ensembl
GRCm38.p6 Ensembl12103,654,374 - 103,657,102 (-)Ensembl
RefSeq Acc Id: NM_007618   ⟹   NP_031644
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912103,612,889 - 103,623,477 (-)NCBI
GRCm3812103,646,630 - 103,657,218 (-)NCBI
MGSCv3712104,884,842 - 104,895,281 (-)RGD
Celera12104,862,913 - 104,873,376 (-)RGD
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_031644 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH13632 (Get FASTA)   NCBI Sequence Viewer  
  BAE26690 (Get FASTA)   NCBI Sequence Viewer  
  CAA49934 (Get FASTA)   NCBI Sequence Viewer  
  EDL18821 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000044033
  ENSMUSP00000044033.7
  ENSMUSP00000119290.2
GenBank Protein Q06770 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031644   ⟸   NM_007618
- Peptide Label: precursor
- UniProtKB: Q06770 (UniProtKB/Swiss-Prot),   Q3UKW1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119290   ⟸   ENSMUST00000152517
Ensembl Acc Id: ENSMUSP00000044033   ⟸   ENSMUST00000044159
Protein Domains
SERPIN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q06770-F1-model_v2 AlphaFold Q06770 1-397 view protein structure

Promoters
RGD ID:8679096
Promoter ID:EPDNEW_M17579
Type:initiation region
Name:Serpina6_1
Description:Mus musculus serine peptidase inhibitor, clade A, member 6 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812103,657,102 - 103,657,162EPDNEW
RGD ID:6823402
Promoter ID:MM_KWN:12571
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000073386
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612104,892,601 - 104,893,101 (-)MPROMDB
RGD ID:6823403
Promoter ID:MM_KWN:12572
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000068452,   OTTMUST00000068453
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612104,894,951 - 104,895,451 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88278 AgrOrtholog
Ensembl Genes ENSMUSG00000060807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044159 ENTREZGENE
  ENSMUST00000044159.7 UniProtKB/Swiss-Prot
  ENSMUST00000152517.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.39.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.497.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Serpin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Serpin_sf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12401 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88278 ENTREZGENE
NCBI Gene 12401 ENTREZGENE
PANTHER CORTICOSTEROID-BINDING GLOBULIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11461 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Serpin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB SERPINA6 RGD
PhenoGen Serpina6 PhenoGen
PRINTS LEUSERPINII UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SERPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SERPIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56574 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CBG_MOUSE UniProtKB/Swiss-Prot
  D3Z2I9_MOUSE UniProtKB/TrEMBL
  Q06770 ENTREZGENE
  Q3UKW1 ENTREZGENE, UniProtKB/TrEMBL
  Q91WQ0_MOUSE UniProtKB/TrEMBL