Zcchc2 (zinc finger, CCHC domain containing 2) - Rat Genome Database

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Gene: Zcchc2 (zinc finger, CCHC domain containing 2) Mus musculus
Analyze
Symbol: Zcchc2
Name: zinc finger, CCHC domain containing 2
RGD ID: 1558271
MGI Page MGI
Description: Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Predicted to be located in cytoplasm. Is expressed in metanephros; submandibular gland primordium; and thymus primordium. Orthologous to human ZCCHC2 (zinc finger CCHC-type containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9930114B20Rik; AW212015; zinc finger CCHC domain-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,916,929 - 105,961,807 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,918,136 - 105,961,804 (+)EnsemblGRCm39 Ensembl
GRCm381105,990,390 - 106,034,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,990,406 - 106,034,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371107,886,983 - 107,930,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361107,817,953 - 107,861,621 (+)NCBIMGSCv36mm8
Celera1108,839,603 - 108,883,221 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (EXP)
dichloromethane  (ISO)
dimethylarsinous acid  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethyl methanesulfonate  (ISO)
ethylbenzene  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
lead diacetate  (EXP)
methyl methanesulfonate  (ISO)
o-xylene  (ISO)
paracetamol  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
succimer  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trichloroethene  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15368895   PMID:15489334   PMID:15747579  
PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:27113764  


Genomics

Comparative Map Data
Zcchc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,916,929 - 105,961,807 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,918,136 - 105,961,804 (+)EnsemblGRCm39 Ensembl
GRCm381105,990,390 - 106,034,077 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,990,406 - 106,034,074 (+)EnsemblGRCm38mm10GRCm38
MGSCv371107,886,983 - 107,930,654 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361107,817,953 - 107,861,621 (+)NCBIMGSCv36mm8
Celera1108,839,603 - 108,883,221 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.76NCBI
ZCCHC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381862,523,025 - 62,586,729 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1862,523,025 - 62,587,709 (+)EnsemblGRCh38hg38GRCh38
GRCh371860,190,258 - 60,253,962 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361858,357,894 - 58,396,798 (+)NCBINCBI36Build 36hg18NCBI36
Build 341858,357,893 - 58,396,796NCBI
Celera1856,910,014 - 56,965,120 (+)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1856,901,978 - 56,956,933 (+)NCBIHuRef
CHM1_11860,186,189 - 60,241,233 (+)NCBICHM1_1
T2T-CHM13v2.01862,725,900 - 62,789,604 (+)NCBIT2T-CHM13v2.0
Zcchc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,621,275 - 22,708,232 (+)NCBIGRCr8
mRatBN7.21322,118,677 - 22,193,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1322,119,568 - 22,166,373 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1322,439,568 - 22,486,371 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,724,356 - 23,771,159 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01322,408,254 - 22,455,061 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,961,762 - 26,052,472 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,966,428 - 26,013,338 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01331,122,293 - 31,210,284 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41312,148,072 - 12,196,570 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11312,148,071 - 12,196,570 (+)NCBI
Celera1321,988,903 - 22,034,139 (+)NCBICelera
Cytogenetic Map13p11NCBI
Zcchc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540246,426,432 - 46,464,063 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540246,426,432 - 46,466,064 (+)NCBIChiLan1.0ChiLan1.0
ZCCHC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21780,044,446 - 80,107,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,737,056 - 65,800,519 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,893,099 - 55,948,648 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11859,210,876 - 59,265,634 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1859,209,993 - 59,265,634 (+)Ensemblpanpan1.1panPan2
ZCCHC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,335,727 - 14,393,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,337,065 - 14,393,158 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha115,297,086 - 15,360,133 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0114,190,236 - 14,253,286 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,191,690 - 14,254,282 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,231,483 - 14,289,704 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,159,498 - 14,222,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,410,914 - 14,469,185 (-)NCBIUU_Cfam_GSD_1.0
Zcchc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494427,546,474 - 27,605,146 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364972,787,525 - 2,844,187 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364972,785,508 - 2,844,181 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCCHC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1158,964,819 - 159,022,271 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11158,964,816 - 159,022,143 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,374,309 - 176,412,878 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCCHC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,186,456 - 17,244,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1817,177,964 - 17,244,574 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660608,438,146 - 8,498,050 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcchc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247928,239,931 - 8,298,508 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zcchc2
1724 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1612
Count of miRNA genes:577
Interacting mature miRNAs:717
Transcripts:ENSMUST00000118196, ENSMUST00000119166, ENSMUST00000131830
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186483929120483929Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89786512123786512Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193310310123636759Mouse
10045976Tir6_mtrypanosome infection response 6 (mouse)Not determined193536855120529678Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
12879492Ecgnq1_meccrine gland number QTL 1 (mouse)1103278062120535225Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse

Markers in Region
AW212015  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381106,033,679 - 106,033,782UniSTSGRCm38
MGSCv371107,930,256 - 107,930,359UniSTSGRCm37
Celera1108,882,823 - 108,882,926UniSTS
Cytogenetic Map1E2.1UniSTS
Whitehead/MRC_RH11512.99UniSTS
UniSTS:234185  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381105,991,928 - 105,992,267UniSTSGRCm38
MGSCv371107,888,505 - 107,888,844UniSTSGRCm37
Celera1108,841,071 - 108,841,410UniSTS
Cytogenetic Map1E2.1UniSTS
UniSTS:234188  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381105,992,639 - 105,992,960UniSTSGRCm38
MGSCv371107,889,216 - 107,889,537UniSTSGRCm37
Celera1108,841,782 - 108,842,103UniSTS
Cytogenetic Map1E2.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001122675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP762779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000118196   ⟹   ENSMUSP00000113974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1105,918,136 - 105,961,804 (+)Ensembl
GRCm38.p6 Ensembl1105,990,406 - 106,034,074 (+)Ensembl
RefSeq Acc Id: ENSMUST00000119166   ⟹   ENSMUSP00000113128
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1105,918,419 - 105,961,797 (+)Ensembl
GRCm38.p6 Ensembl1105,990,689 - 106,034,067 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131830   ⟹   ENSMUSP00000140540
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1105,939,474 - 105,950,988 (+)Ensembl
GRCm38.p6 Ensembl1106,011,744 - 106,023,258 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186983   ⟹   ENSMUSP00000141148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1105,931,852 - 105,960,178 (+)Ensembl
GRCm38.p6 Ensembl1106,004,122 - 106,032,448 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188954   ⟹   ENSMUSP00000139971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1105,931,867 - 105,955,231 (+)Ensembl
GRCm38.p6 Ensembl1106,004,137 - 106,027,501 (+)Ensembl
RefSeq Acc Id: NM_001122675   ⟹   NP_001116147
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,918,136 - 105,961,807 (+)NCBI
GRCm381105,990,406 - 106,034,077 (+)ENTREZGENE
MGSCv371107,886,983 - 107,930,654 (+)RGD
Celera1108,839,603 - 108,883,221 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001122676   ⟹   NP_001116148
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,918,136 - 105,961,807 (+)NCBI
GRCm381105,990,406 - 106,034,077 (+)ENTREZGENE
MGSCv371107,886,983 - 107,930,654 (+)RGD
Celera1108,839,603 - 108,883,221 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529512   ⟹   XP_006529575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529513   ⟹   XP_006529576
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529514   ⟹   XP_006529577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529515   ⟹   XP_006529578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529516   ⟹   XP_006529579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529517   ⟹   XP_006529580
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,391 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529518   ⟹   XP_006529581
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,391 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253835   ⟹   XP_030109695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253840   ⟹   XP_030109700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391105,916,929 - 105,961,804 (+)NCBI
GRCm381105,990,390 - 106,034,074 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001116147   ⟸   NM_001122675
- Peptide Label: isoform B
- UniProtKB: Q69ZB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116148   ⟸   NM_001122676
- Peptide Label: isoform A
- UniProtKB: Q7TNF1 (UniProtKB/Swiss-Prot),   Q8CB08 (UniProtKB/Swiss-Prot),   Q69ZB8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006529575   ⟸   XM_006529512
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006529579   ⟸   XM_006529516
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006529577   ⟸   XM_006529514
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006529578   ⟸   XM_006529515
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006529576   ⟸   XM_006529513
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006529580   ⟸   XM_006529517
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006529581   ⟸   XM_006529518
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030109700   ⟸   XM_030253840
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030109695   ⟸   XM_030253835
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000113128   ⟸   ENSMUST00000119166
RefSeq Acc Id: ENSMUSP00000113974   ⟸   ENSMUST00000118196
RefSeq Acc Id: ENSMUSP00000141148   ⟸   ENSMUST00000186983
RefSeq Acc Id: ENSMUSP00000140540   ⟸   ENSMUST00000131830
RefSeq Acc Id: ENSMUSP00000139971   ⟸   ENSMUST00000188954
Protein Domains
CCHC-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q69ZB8-F1-model_v2 AlphaFold Q69ZB8 1-1166 view protein structure

Promoters
RGD ID:6874640
Promoter ID:EPDNEW_M771
Type:initiation region
Name:Zcchc2_1
Description:Mus musculus zinc finger, CCHC domain containing 2 , transcriptvariant B, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381105,990,422 - 105,990,482EPDNEW
RGD ID:6818728
Promoter ID:MM_KWN:1796
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001122675,   NM_001122676,   XM_921685_GM7160
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361107,886,121 - 107,888,507 (+)MPROMDB
RGD ID:6818727
Promoter ID:MM_KWN:1799
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver
Transcripts:OTTMUST00000066618
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361107,907,811 - 107,908,747 (+)MPROMDB
RGD ID:6818730
Promoter ID:MM_KWN:1800
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:UC007CGT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361107,926,411 - 107,927,722 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444114 AgrOrtholog
Ensembl Genes ENSMUSG00000038866 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000118196 ENTREZGENE
  ENSMUST00000118196.8 UniProtKB/Swiss-Prot
  ENSMUST00000119166 ENTREZGENE
  ENSMUST00000119166.8 UniProtKB/Swiss-Prot
  ENSMUST00000131830.3 UniProtKB/TrEMBL
  ENSMUST00000186983.7 UniProtKB/TrEMBL
  ENSMUST00000188954.7 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZCCHC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227449 UniProtKB/Swiss-Prot
MGD MGI:2444114 ENTREZGENE
NCBI Gene 227449 ENTREZGENE
PANTHER PTHR46939 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zcchc2 PhenoGen
PROSITE ZF_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57756 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPY9_MOUSE UniProtKB/TrEMBL
  A0A087WRA5_MOUSE UniProtKB/TrEMBL
  A0A087WSQ9_MOUSE UniProtKB/TrEMBL
  Q69ZB8 ENTREZGENE
  Q7TNF1 ENTREZGENE
  Q8CB08 ENTREZGENE
  ZCHC2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q7TNF1 UniProtKB/Swiss-Prot
  Q8CB08 UniProtKB/Swiss-Prot