Tpk1 (thiamine pyrophosphokinase) - Rat Genome Database

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Gene: Tpk1 (thiamine pyrophosphokinase) Mus musculus
Analyze
Symbol: Tpk1
Name: thiamine pyrophosphokinase
RGD ID: 1558263
MGI Page MGI
Description: Enables thiamine diphosphokinase activity. Involved in thiamine diphosphate biosynthetic process. Acts upstream of or within thiamine metabolic process. Is active in cytosol. Is expressed in several structures, including gonad; heart; liver; lung; and spleen. Human ortholog(s) of this gene implicated in inherited metabolic disorder. Orthologous to human TPK1 (thiamin pyrophosphokinase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: mTPK1; thiamin pyrophosphokinase 1; thiamine pyrophosphokinase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39643,316,510 - 43,644,726 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl643,321,935 - 43,643,212 (-)EnsemblGRCm39 Ensembl
GRCm38643,339,576 - 43,667,792 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl643,345,001 - 43,666,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv37643,295,006 - 43,616,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36643,274,614 - 43,595,782 (-)NCBIMGSCv36mm8
Celera643,288,958 - 43,609,819 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map621.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8182042   PMID:10349636   PMID:10567383   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11342111   PMID:11342117   PMID:11419946   PMID:12477932   PMID:12904583   PMID:14610273  
PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16365036   PMID:17967808   PMID:21267068   PMID:21873635   PMID:38355793   PMID:38547260  


Genomics

Comparative Map Data
Tpk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39643,316,510 - 43,644,726 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl643,321,935 - 43,643,212 (-)EnsemblGRCm39 Ensembl
GRCm38643,339,576 - 43,667,792 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl643,345,001 - 43,666,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv37643,295,006 - 43,616,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36643,274,614 - 43,595,782 (-)NCBIMGSCv36mm8
Celera643,288,958 - 43,609,819 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map621.19NCBI
TPK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387144,451,941 - 144,836,437 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7144,451,941 - 144,836,395 (-)EnsemblGRCh38hg38GRCh38
GRCh377144,149,034 - 144,533,146 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367143,779,967 - 144,164,079 (-)NCBINCBI36Build 36hg18NCBI36
Build 347143,586,690 - 143,970,781NCBI
Celera7138,823,074 - 139,207,017 (-)NCBICelera
Cytogenetic Map7q35NCBI
HuRef7138,228,218 - 138,611,054 (-)NCBIHuRef
CHM1_17144,157,512 - 144,541,732 (-)NCBICHM1_1
T2T-CHM13v2.07145,632,112 - 146,017,232 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27143,487,292 - 143,871,298 (-)NCBI
Tpk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8473,170,125 - 73,557,683 (-)NCBIGRCr8
mRatBN7.2472,170,134 - 72,557,707 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl472,170,134 - 72,557,694 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx477,158,223 - 77,536,500 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0473,071,450 - 73,449,736 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0471,460,747 - 71,842,026 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0472,792,252 - 73,174,179 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl472,792,252 - 73,174,179 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04137,495,338 - 137,661,388 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.04137,705,456 - 137,869,961 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4471,113,965 - 71,521,331 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera467,116,073 - 67,485,255 (-)NCBICelera
Cytogenetic Map4q24NCBI
Tpk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955491623,530 - 968,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955491621,941 - 968,570 (-)NCBIChiLan1.0ChiLan1.0
TPK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26181,024,614 - 181,404,296 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1733,034,876 - 33,414,560 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07136,165,941 - 136,549,606 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17148,653,898 - 149,036,602 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7148,654,445 - 149,036,342 (-)Ensemblpanpan1.1panPan2
TPK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1165,257,749 - 5,588,179 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl165,257,205 - 5,636,153 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha166,370,726 - 6,696,344 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0165,117,780 - 5,448,228 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,117,828 - 5,448,212 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1165,053,899 - 5,379,513 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0164,910,996 - 5,236,586 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0164,981,542 - 5,307,335 (+)NCBIUU_Cfam_GSD_1.0
Tpk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511811,116,997 - 11,488,862 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365271,450,430 - 1,786,521 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365271,450,918 - 1,786,431 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TPK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9112,931,795 - 113,305,175 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19112,931,370 - 113,305,178 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29124,255,226 - 124,629,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TPK1
(Chlorocebus sabaeus - green monkey)		 No map positions available.
Tpk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480010,382,717 - 10,792,605 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480010,382,409 - 10,792,459 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tpk1
16041 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1671
Count of miRNA genes:609
Interacting mature miRNAs:770
Transcripts:ENSMUST00000067888, ENSMUST00000114643, ENSMUST00000114644, ENSMUST00000149424, ENSMUST00000150599
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse

Markers in Region
D6Mit350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38643,624,574 - 43,624,746UniSTSGRCm38
MGSCv37643,574,573 - 43,574,745UniSTSGRCm37
Celera643,568,670 - 43,568,842UniSTS
Cytogenetic Map6B2UniSTS
cM Map619.0UniSTS
Whitehead Genetic69.8UniSTS
UniSTS:235430  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38643,345,230 - 43,345,430UniSTSGRCm38
MGSCv37643,295,229 - 43,295,429UniSTSGRCm37
Celera643,289,181 - 43,289,381UniSTS
Cytogenetic Map6B2UniSTS
Tpk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B2UniSTS
cM Map621.19UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001311111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB027568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE691023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000067888   ⟹   ENSMUSP00000065631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl643,321,935 - 43,643,212 (-)Ensembl
GRCm38.p6 Ensembl643,345,001 - 43,666,278 (-)Ensembl
Ensembl Acc Id: ENSMUST00000114643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl643,569,977 - 43,642,815 (-)Ensembl
GRCm38.p6 Ensembl643,593,043 - 43,665,881 (-)Ensembl
Ensembl Acc Id: ENSMUST00000114644   ⟹   ENSMUSP00000110291
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl643,322,208 - 43,643,109 (-)Ensembl
GRCm38.p6 Ensembl643,345,274 - 43,666,175 (-)Ensembl
Ensembl Acc Id: ENSMUST00000149424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl643,323,776 - 43,453,454 (-)Ensembl
GRCm38.p6 Ensembl643,346,842 - 43,476,520 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150599
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl643,568,525 - 43,643,153 (-)Ensembl
GRCm38.p6 Ensembl643,591,591 - 43,666,219 (-)Ensembl
Ensembl Acc Id: ENSMUST00000203649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl643,322,007 - 43,602,900 (-)Ensembl
GRCm38.p6 Ensembl643,345,073 - 43,625,966 (-)Ensembl
RefSeq Acc Id: NM_001311111   ⟹   NP_001298040
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39643,321,935 - 43,643,212 (-)NCBI
GRCm38643,345,001 - 43,666,278 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013861   ⟹   NP_038889
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39643,321,935 - 43,643,212 (-)NCBI
GRCm38643,345,001 - 43,666,278 (-)NCBI
MGSCv37643,295,006 - 43,616,174 (-)RGD
Celera643,288,958 - 43,609,819 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506218   ⟹   XP_006506281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39643,316,510 - 43,644,726 (-)NCBI
GRCm38643,339,576 - 43,667,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006506219   ⟹   XP_006506282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39643,316,510 - 43,644,726 (-)NCBI
GRCm38643,339,576 - 43,667,792 (-)NCBI
Sequence:
RefSeq Acc Id: NP_038889   ⟸   NM_013861
- Peptide Label: isoform 1
- UniProtKB: Q8CEE8 (UniProtKB/Swiss-Prot),   Q8CAB5 (UniProtKB/Swiss-Prot),   Q3UWB5 (UniProtKB/Swiss-Prot),   Q8R1Q6 (UniProtKB/Swiss-Prot),   Q9R0M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506281   ⟸   XM_006506218
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006506282   ⟸   XM_006506219
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001298040   ⟸   NM_001311111
- Peptide Label: isoform 2
- UniProtKB: Q9R0M5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000065631   ⟸   ENSMUST00000067888
Ensembl Acc Id: ENSMUSP00000110291   ⟸   ENSMUST00000114644

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0M5-F1-model_v2 AlphaFold Q9R0M5 1-243 view protein structure

Promoters
RGD ID:6840107
Promoter ID:MM_KWN:45829
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000057418,   OTTMUST00000057419,   OTTMUST00000057421,   UC009BSR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36643,615,904 - 43,616,404 (-)MPROMDB
RGD ID:6889556
Promoter ID:EPDNEW_M8229
Type:initiation region
Name:Tpk1_1
Description:Mus musculus thiamine pyrophosphokinase , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38643,666,183 - 43,666,243EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1352500 AgrOrtholog
Ensembl Genes ENSMUSG00000029735 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000067888 ENTREZGENE
  ENSMUST00000067888.14 UniProtKB/Swiss-Prot
  ENSMUST00000114644 ENTREZGENE
  ENSMUST00000114644.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.10240 UniProtKB/Swiss-Prot
  Thiamin pyrophosphokinase, thiamin-binding domain UniProtKB/Swiss-Prot
InterPro Thi_PPkinase UniProtKB/Swiss-Prot
  Thiamin_pyrophosphokinase_euk UniProtKB/Swiss-Prot
  Thiamin_PyroPKinase_B1-bd UniProtKB/Swiss-Prot
  TPK_B1-bd_sf UniProtKB/Swiss-Prot
  TPK_catalytic UniProtKB/Swiss-Prot
  TPK_catalytic_sf UniProtKB/Swiss-Prot
KEGG Report mmu:29807 UniProtKB/Swiss-Prot
MGD MGI:1352500 ENTREZGENE
NCBI Gene 29807 ENTREZGENE
PANTHER THIAMIN PYROPHOSPHOKINASE UniProtKB/Swiss-Prot
  THIAMIN PYROPHOSPHOKINASE 1 UniProtKB/Swiss-Prot
Pfam TPK_B1_binding UniProtKB/Swiss-Prot
  TPK_catalytic UniProtKB/Swiss-Prot
PhenoGen Tpk1 PhenoGen
PIRSF Thiamin_pyrophosphokinase UniProtKB/Swiss-Prot
SMART TPK_B1_binding UniProtKB/Swiss-Prot
Superfamily-SCOP SSF63862 UniProtKB/Swiss-Prot
  SSF63999 UniProtKB/Swiss-Prot
UniProt Q3UWB5 ENTREZGENE
  Q8CAB5 ENTREZGENE
  Q8CEE8 ENTREZGENE
  Q8R1Q6 ENTREZGENE
  Q9R0M5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UWB5 UniProtKB/Swiss-Prot
  Q8CAB5 UniProtKB/Swiss-Prot
  Q8CEE8 UniProtKB/Swiss-Prot
  Q8R1Q6 UniProtKB/Swiss-Prot