Rassf6 (Ras association (RalGDS/AF-6) domain family member 6) - Rat Genome Database

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Gene: Rassf6 (Ras association (RalGDS/AF-6) domain family member 6) Mus musculus
Analyze
Symbol: Rassf6
Name: Ras association (RalGDS/AF-6) domain family member 6
RGD ID: 1558221
MGI Page MGI
Description: Involved in regulation of apoptotic process. Acts upstream of or within positive regulation of apoptotic process. Is expressed in gut; liver lobe; urinary system; and vibrissa. Orthologous to human RASSF6 (Ras association domain family member 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1600016B17Rik; Ras association (RalGDS/AF-6) domain family 6; ras association domain-containing protein 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39590,750,933 - 90,788,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl590,750,935 - 90,788,516 (-)EnsemblGRCm39 Ensembl
GRCm38590,603,076 - 90,640,734 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,603,076 - 90,640,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv37591,032,102 - 91,069,513 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36591,678,286 - 91,715,667 (-)NCBIMGSCv36mm8
Celera588,754,754 - 88,792,170 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12819125   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17404571   PMID:18554416   PMID:21267068  
PMID:21873635   PMID:23626755   PMID:34652874  


Genomics

Comparative Map Data
Rassf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39590,750,933 - 90,788,594 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl590,750,935 - 90,788,516 (-)EnsemblGRCm39 Ensembl
GRCm38590,603,076 - 90,640,734 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl590,603,076 - 90,640,657 (-)EnsemblGRCm38mm10GRCm38
MGSCv37591,032,102 - 91,069,513 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36591,678,286 - 91,715,667 (-)NCBIMGSCv36mm8
Celera588,754,754 - 88,792,170 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map544.78NCBI
RASSF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38473,571,550 - 73,620,631 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl473,571,550 - 73,620,631 (-)EnsemblGRCh38hg38GRCh38
GRCh37474,437,267 - 74,486,348 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36474,657,726 - 74,705,204 (-)NCBINCBI36Build 36hg18NCBI36
Celera471,798,579 - 71,846,099 (-)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef470,248,608 - 70,297,731 (-)NCBIHuRef
CHM1_1474,473,102 - 74,522,188 (-)NCBICHM1_1
T2T-CHM13v2.0476,915,192 - 76,964,307 (-)NCBIT2T-CHM13v2.0
Rassf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81417,717,505 - 17,757,507 (+)NCBIGRCr8
mRatBN7.21417,433,328 - 17,473,565 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1417,442,789 - 17,473,330 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1417,433,546 - 17,473,289 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01418,752,468 - 18,792,218 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01417,444,891 - 17,484,198 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01418,983,852 - 19,023,921 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1418,983,853 - 19,025,971 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01418,892,843 - 18,932,798 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41418,947,511 - 18,987,703 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1416,808,441 - 16,848,145 (+)NCBICelera
Cytogenetic Map14p22NCBI
Rassf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495565749,115 - 59,237 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495565749,115 - 59,237 (-)NCBIChiLan1.0ChiLan1.0
RASSF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2356,443,998 - 56,492,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1456,633,021 - 56,681,918 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0450,575,973 - 50,624,901 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1456,408,103 - 56,457,055 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl456,408,042 - 56,457,055 (+)Ensemblpanpan1.1panPan2
RASSF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11362,299,717 - 62,344,698 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1362,300,876 - 62,345,372 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1361,969,307 - 62,014,186 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01363,109,864 - 63,154,572 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1363,111,015 - 63,154,670 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11362,720,894 - 62,765,418 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01362,210,231 - 62,255,168 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01363,350,110 - 63,395,236 (-)NCBIUU_Cfam_GSD_1.0
Rassf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528513,414,677 - 13,456,123 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365981,875,618 - 1,905,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365981,866,732 - 1,907,949 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASSF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl869,771,934 - 69,831,364 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1869,773,526 - 69,832,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2873,873,634 - 73,931,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RASSF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1722,036,965 - 22,086,414 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl722,040,648 - 22,085,148 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666084710,796 - 759,242 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rassf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473533,872,745 - 33,899,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473533,850,506 - 33,900,227 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rassf6
27 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:183
Interacting mature miRNAs:192
Transcripts:ENSMUST00000031317
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57531534898019803Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
12910816Ogrq2_moverall growth rate QTL 2 (mouse)57717582397658215Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001407905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC135240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC075725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY792116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031317   ⟹   ENSMUSP00000031317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,750,935 - 90,788,346 (-)Ensembl
GRCm38.p6 Ensembl590,603,076 - 90,640,487 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201121   ⟹   ENSMUSP00000144586
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,765,490 - 90,788,487 (-)Ensembl
GRCm38.p6 Ensembl590,617,631 - 90,640,628 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201370   ⟹   ENSMUSP00000144199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,770,027 - 90,788,386 (-)Ensembl
GRCm38.p6 Ensembl590,622,168 - 90,640,527 (-)Ensembl
RefSeq Acc Id: ENSMUST00000201436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,786,331 - 90,788,514 (-)Ensembl
GRCm38.p6 Ensembl590,638,472 - 90,640,655 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202704   ⟹   ENSMUSP00000144532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,751,690 - 90,788,516 (-)Ensembl
GRCm38.p6 Ensembl590,603,831 - 90,640,657 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202784   ⟹   ENSMUSP00000144337
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,750,935 - 90,788,346 (-)Ensembl
GRCm38.p6 Ensembl590,603,076 - 90,640,487 (-)Ensembl
RefSeq Acc Id: ENSMUST00000202807   ⟹   ENSMUSP00000144027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl590,751,482 - 90,757,660 (-)Ensembl
GRCm38.p6 Ensembl590,603,623 - 90,609,801 (-)Ensembl
RefSeq Acc Id: NM_001310656   ⟹   NP_001297585
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,933 - 90,788,381 (-)NCBI
GRCm38590,603,076 - 90,640,527 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001407901   ⟹   NP_001394830
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,933 - 90,788,543 (-)NCBI
RefSeq Acc Id: NM_001407903   ⟹   NP_001394832
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,933 - 90,788,543 (-)NCBI
RefSeq Acc Id: NM_001407905   ⟹   NP_001394834
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,933 - 90,788,543 (-)NCBI
RefSeq Acc Id: NM_028478   ⟹   NP_082754
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,933 - 90,788,381 (-)NCBI
GRCm38590,603,076 - 90,640,527 (-)NCBI
MGSCv37591,032,102 - 91,069,513 (-)RGD
Celera588,754,754 - 88,792,170 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176431
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,933 - 90,788,543 (-)NCBI
RefSeq Acc Id: XM_006535241   ⟹   XP_006535304
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,939 - 90,788,334 (-)NCBI
GRCm38590,603,080 - 90,640,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535242   ⟹   XP_006535305
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,945 - 90,788,422 (-)NCBI
GRCm38590,603,080 - 90,640,563 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535243   ⟹   XP_006535306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,945 - 90,788,586 (-)NCBI
GRCm38590,603,080 - 90,640,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535244   ⟹   XP_006535307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,939 - 90,788,334 (-)NCBI
GRCm38590,603,080 - 90,640,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535245   ⟹   XP_006535308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,939 - 90,788,334 (-)NCBI
GRCm38590,603,080 - 90,640,475 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006535249   ⟹   XP_006535312
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,939 - 90,779,456 (-)NCBI
GRCm38590,603,080 - 90,631,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249579   ⟹   XP_011247881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,750,939 - 90,788,594 (-)NCBI
GRCm38590,603,080 - 90,640,734 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784751
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39590,752,177 - 90,788,334 (-)NCBI
GRCm38590,604,319 - 90,640,475 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082754   ⟸   NM_028478
- Peptide Label: isoform 1
- UniProtKB: Q80UQ2 (UniProtKB/Swiss-Prot),   Q9DAW2 (UniProtKB/Swiss-Prot),   G3X8Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535307   ⟸   XM_006535244
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006535306   ⟸   XM_006535243
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006535305   ⟸   XM_006535242
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006535304   ⟸   XM_006535241
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006535308   ⟸   XM_006535245
- Peptide Label: isoform X3
- UniProtKB: Q80UQ2 (UniProtKB/Swiss-Prot),   Q9DAW2 (UniProtKB/Swiss-Prot),   G3X8Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535312   ⟸   XM_006535249
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011247881   ⟸   XM_011249579
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001297585   ⟸   NM_001310656
- Peptide Label: isoform 2
- UniProtKB: Q80UQ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000031317   ⟸   ENSMUST00000031317
RefSeq Acc Id: ENSMUSP00000144027   ⟸   ENSMUST00000202807
RefSeq Acc Id: ENSMUSP00000144532   ⟸   ENSMUST00000202704
RefSeq Acc Id: ENSMUSP00000144337   ⟸   ENSMUST00000202784
RefSeq Acc Id: ENSMUSP00000144586   ⟸   ENSMUST00000201121
RefSeq Acc Id: ENSMUSP00000144199   ⟸   ENSMUST00000201370
RefSeq Acc Id: NP_001394834   ⟸   NM_001407905
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001394832   ⟸   NM_001407903
- Peptide Label: isoform 1
- UniProtKB: Q80UQ2 (UniProtKB/Swiss-Prot),   G3X8Z9 (UniProtKB/Swiss-Prot),   Q9DAW2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001394830   ⟸   NM_001407901
- Peptide Label: isoform 1
- UniProtKB: Q80UQ2 (UniProtKB/Swiss-Prot),   G3X8Z9 (UniProtKB/Swiss-Prot),   Q9DAW2 (UniProtKB/Swiss-Prot)
Protein Domains
Ras-associating   SARAH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80UQ2-F1-model_v2 AlphaFold Q80UQ2 1-353 view protein structure

Promoters
RGD ID:6887116
Promoter ID:EPDNEW_M7009
Type:initiation region
Name:Rassf6_1
Description:Mus musculus Ras association (RalGDS/AF-6) domain family member6 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38590,640,522 - 90,640,582EPDNEW
RGD ID:6838197
Promoter ID:MM_KWN:42843
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Liver,   Lung
Transcripts:NM_028478,   UC008YBE.1,   UC008YBF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36591,069,436 - 91,069,936 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920496 AgrOrtholog
Ensembl Genes ENSMUSG00000029370 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031317 ENTREZGENE
  ENSMUST00000031317.10 UniProtKB/Swiss-Prot
  ENSMUST00000201121.4 UniProtKB/TrEMBL
  ENSMUST00000201370.2 UniProtKB/TrEMBL
  ENSMUST00000202704 ENTREZGENE
  ENSMUST00000202704.4 UniProtKB/Swiss-Prot
  ENSMUST00000202784 ENTREZGENE
  ENSMUST00000202784.4 UniProtKB/Swiss-Prot
  ENSMUST00000202807.2 UniProtKB/TrEMBL
InterPro C-RASSF UniProtKB/Swiss-Prot
  RA_dom UniProtKB/Swiss-Prot
  SARAH_dom UniProtKB/Swiss-Prot
  SARAH_RASSF6 UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
KEGG Report mmu:73246 UniProtKB/Swiss-Prot
MGD MGI:1920496 ENTREZGENE
NCBI Gene 73246 ENTREZGENE
PANTHER PTHR22738 UniProtKB/Swiss-Prot
  PTHR22738:SF3 UniProtKB/Swiss-Prot
Pfam Nore1-SARAH UniProtKB/Swiss-Prot
  PF00788 UniProtKB/Swiss-Prot
PhenoGen Rassf6 PhenoGen
PROSITE PS50200 UniProtKB/Swiss-Prot
  SARAH UniProtKB/Swiss-Prot
SMART SM00314 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot
UniProt A0A0J9YU65_MOUSE UniProtKB/TrEMBL
  A0A0J9YUI5_MOUSE UniProtKB/TrEMBL
  A0A0J9YVB6_MOUSE UniProtKB/TrEMBL
  G3X8Z9 ENTREZGENE
  Q80UQ2 ENTREZGENE
  Q9DAW2 ENTREZGENE
  RASF6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary G3X8Z9 UniProtKB/Swiss-Prot
  Q9DAW2 UniProtKB/Swiss-Prot