Mindy1 (MINDY lysine 48 deubiquitinase 1) - Rat Genome Database

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Gene: Mindy1 (MINDY lysine 48 deubiquitinase 1) Mus musculus
Analyze
Symbol: Mindy1
Name: MINDY lysine 48 deubiquitinase 1
RGD ID: 1558166
MGI Page MGI
Description: Predicted to enable K48-linked deubiquitinase activity; K48-linked polyubiquitin modification-dependent protein binding activity; and cysteine-type carboxypeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in nuclear body. Orthologous to human MINDY1 (MINDY lysine 48 deubiquitinase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810005H09Rik; 4930504E06Rik; AA562754; AA960384; AW561904; cI-4; cI-40; deubiquitinating enzyme MINDY-1; Fam6; Fam63a; family with sequence similarity 63, member A; hypothetical protein LOC75007; mKIAA1390; NF-E2 inducible protein; ni; ubiquitin carboxyl-terminal hydrolase MINDY-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,189,237 - 95,203,477 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,188,656 - 95,203,477 (+)EnsemblGRCm39 Ensembl
GRCm38395,281,926 - 95,296,166 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,281,345 - 95,296,166 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,086,866 - 95,100,083 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,368,348 - 95,381,565 (+)NCBIMGSCv36mm8
Celera396,714,246 - 96,727,463 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11004510   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16481151   PMID:17923245   PMID:18799693   PMID:21677750   PMID:21873635   PMID:24194600   PMID:25849460   PMID:26398943   PMID:27626380   PMID:29644784   PMID:30973865   PMID:32325033  
PMID:38355793  


Genomics

Comparative Map Data
Mindy1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,189,237 - 95,203,477 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,188,656 - 95,203,477 (+)EnsemblGRCm39 Ensembl
GRCm38395,281,926 - 95,296,166 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,281,345 - 95,296,166 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,086,866 - 95,100,083 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,368,348 - 95,381,565 (+)NCBIMGSCv36mm8
Celera396,714,246 - 96,727,463 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
MINDY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,996,536 - 151,008,393 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,996,549 - 151,008,376 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,969,012 - 150,980,869 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,234,173 - 149,245,957 (-)NCBINCBI36Build 36hg18NCBI36
Celera1124,084,996 - 124,096,549 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,346,313 - 122,357,851 (-)NCBIHuRef
CHM1_11152,364,612 - 152,376,164 (-)NCBICHM1_1
T2T-CHM13v2.01150,120,231 - 150,132,083 (-)NCBIT2T-CHM13v2.0
Mindy1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,550,026 - 185,561,987 (+)NCBIGRCr8
mRatBN7.22182,859,977 - 182,873,000 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,860,472 - 182,873,015 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,530,474 - 190,538,051 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,326,117 - 188,333,676 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,162,960 - 183,170,537 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02196,458,229 - 196,470,133 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,462,554 - 196,470,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,955,425 - 215,967,614 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,198,815 - 190,206,098 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2175,398,815 - 175,406,392 (+)NCBICelera
Cytogenetic Map2q34NCBI
Mindy1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588371,739 - 377,004 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588371,325 - 382,167 (-)NCBIChiLan1.0ChiLan1.0
MINDY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,824,938 - 98,836,490 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,579,142 - 98,590,707 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,346,260 - 126,356,992 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,994,561 - 130,006,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,994,561 - 130,006,066 (-)Ensemblpanpan1.1panPan2
MINDY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,092,245 - 60,103,797 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,094,702 - 60,103,307 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,536,043 - 59,548,711 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,108,058 - 61,120,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,110,358 - 61,119,613 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,937,149 - 59,949,815 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,022,037 - 60,034,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,749,563 - 60,762,236 (-)NCBIUU_Cfam_GSD_1.0
Mindy1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,188,128 - 22,227,117 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,213,947 - 1,229,413 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,218,510 - 1,229,680 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MINDY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,218,742 - 98,234,332 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,218,616 - 98,231,356 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,452,896 - 107,486,221 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MINDY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,273,243 - 12,283,968 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mindy1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,817,564 - 18,826,501 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,815,570 - 18,826,501 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mindy1
705 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2182
Count of miRNA genes:682
Interacting mature miRNAs:859
Transcripts:ENSMUST00000039537, ENSMUST00000107187, ENSMUST00000133762, ENSMUST00000135249, ENSMUST00000135264, ENSMUST00000137743, ENSMUST00000143498, ENSMUST00000147963, ENSMUST00000149568, ENSMUST00000152640, ENSMUST00000153928, ENSMUST00000168223
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse

Markers in Region
AA960384  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,295,859 - 95,295,943UniSTSGRCm38
MGSCv37395,099,781 - 95,099,865UniSTSGRCm37
Celera396,727,161 - 96,727,245UniSTS
Cytogenetic Map3F2UniSTS
Whitehead/MRC_RH31082.16UniSTS
UniSTS:234753  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,286,746 - 95,286,975UniSTSGRCm38
MGSCv37395,090,668 - 95,090,897UniSTSGRCm37
Celera396,718,048 - 96,718,277UniSTS
Cytogenetic Map3F2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB075603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK007342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ571591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000039537   ⟹   ENSMUSP00000043910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,190,255 - 95,203,477 (+)Ensembl
GRCm38.p6 Ensembl395,282,944 - 95,296,166 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107187   ⟹   ENSMUSP00000102805
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,190,255 - 95,203,477 (+)Ensembl
GRCm38.p6 Ensembl395,282,944 - 95,296,166 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,199,297 - 95,203,472 (+)Ensembl
GRCm38.p6 Ensembl395,291,986 - 95,296,161 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,188,728 - 95,195,147 (+)Ensembl
GRCm38.p6 Ensembl395,281,417 - 95,287,836 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,190,526 - 95,199,118 (+)Ensembl
GRCm38.p6 Ensembl395,283,215 - 95,291,807 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,190,913 - 95,195,147 (+)Ensembl
GRCm38.p6 Ensembl395,283,602 - 95,287,836 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143498   ⟹   ENSMUSP00000142400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,193,150 - 95,195,325 (+)Ensembl
GRCm38.p6 Ensembl395,285,839 - 95,288,014 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,188,798 - 95,190,827 (+)Ensembl
GRCm38.p6 Ensembl395,281,487 - 95,283,516 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,189,156 - 95,192,168 (+)Ensembl
GRCm38.p6 Ensembl395,281,845 - 95,284,857 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,188,656 - 95,193,274 (+)Ensembl
GRCm38.p6 Ensembl395,281,345 - 95,285,963 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,193,510 - 95,195,271 (+)Ensembl
GRCm38.p6 Ensembl395,286,199 - 95,287,960 (+)Ensembl
Ensembl Acc Id: ENSMUST00000168223   ⟹   ENSMUSP00000127839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,195,259 - 95,203,474 (+)Ensembl
GRCm38.p6 Ensembl395,287,948 - 95,296,163 (+)Ensembl
RefSeq Acc Id: NM_133858   ⟹   NP_598619
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,246 - 95,203,475 (+)NCBI
GRCm38395,282,935 - 95,296,164 (+)NCBI
MGSCv37395,086,866 - 95,100,083 (+)RGD
Celera396,714,237 - 96,727,466 (+)ENTREZGENE
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_199475   ⟹   NP_955769
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,246 - 95,203,475 (+)NCBI
GRCm38395,282,935 - 95,296,164 (+)NCBI
Celera396,714,237 - 96,727,466 (+)ENTREZGENE
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502219   ⟹   XP_006502282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,189,237 - 95,203,477 (+)NCBI
GRCm38395,281,926 - 95,296,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240261   ⟹   XP_011238563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,846 - 95,203,477 (+)NCBI
GRCm38395,283,535 - 95,296,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252859   ⟹   XP_030108719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,480 - 95,203,477 (+)NCBI
GRCm38395,286,487 - 95,296,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252860   ⟹   XP_030108720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,846 - 95,203,477 (+)NCBI
GRCm38395,283,535 - 95,296,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163367   ⟹   XP_036019260
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,407 - 95,203,477 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163368   ⟹   XP_036019261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,190,328 - 95,203,477 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_598619 (Get FASTA)   NCBI Sequence Viewer  
  NP_955769 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502282 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238563 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108719 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108720 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019260 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019261 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH08112 (Get FASTA)   NCBI Sequence Viewer  
  AAH51048 (Get FASTA)   NCBI Sequence Viewer  
  AAH57901 (Get FASTA)   NCBI Sequence Viewer  
  AAH69953 (Get FASTA)   NCBI Sequence Viewer  
  AAH93521 (Get FASTA)   NCBI Sequence Viewer  
  AAH94388 (Get FASTA)   NCBI Sequence Viewer  
  AAI32302 (Get FASTA)   NCBI Sequence Viewer  
  AAI44750 (Get FASTA)   NCBI Sequence Viewer  
  BAB29934 (Get FASTA)   NCBI Sequence Viewer  
  BAC29601 (Get FASTA)   NCBI Sequence Viewer  
  BAD06451 (Get FASTA)   NCBI Sequence Viewer  
  BAE41294 (Get FASTA)   NCBI Sequence Viewer  
  EDL38794 (Get FASTA)   NCBI Sequence Viewer  
  EDL38795 (Get FASTA)   NCBI Sequence Viewer  
  EDL38796 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000043910
  ENSMUSP00000043910.8
  ENSMUSP00000102805
  ENSMUSP00000102805.3
  ENSMUSP00000127839.2
  ENSMUSP00000142400.2
GenBank Protein Q76LS9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_598619   ⟸   NM_133858
- Peptide Label: isoform 2
- UniProtKB: Q76LS9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_955769   ⟸   NM_199475
- Peptide Label: isoform 1
- UniProtKB: Q8CB41 (UniProtKB/Swiss-Prot),   Q80V14 (UniProtKB/Swiss-Prot),   Q6PES4 (UniProtKB/Swiss-Prot),   Q566I9 (UniProtKB/Swiss-Prot),   Q52KE4 (UniProtKB/Swiss-Prot),   Q3TEF4 (UniProtKB/Swiss-Prot),   Q8CHR2 (UniProtKB/Swiss-Prot),   Q76LS9 (UniProtKB/Swiss-Prot),   B7ZMR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502282   ⟸   XM_006502219
- Peptide Label: isoform X1
- UniProtKB: Q8CB41 (UniProtKB/Swiss-Prot),   Q80V14 (UniProtKB/Swiss-Prot),   Q6PES4 (UniProtKB/Swiss-Prot),   Q566I9 (UniProtKB/Swiss-Prot),   Q52KE4 (UniProtKB/Swiss-Prot),   Q3TEF4 (UniProtKB/Swiss-Prot),   Q8CHR2 (UniProtKB/Swiss-Prot),   Q76LS9 (UniProtKB/Swiss-Prot),   B7ZMR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238563   ⟸   XM_011240261
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030108720   ⟸   XM_030252860
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030108719   ⟸   XM_030252859
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000142400   ⟸   ENSMUST00000143498
Ensembl Acc Id: ENSMUSP00000102805   ⟸   ENSMUST00000107187
Ensembl Acc Id: ENSMUSP00000127839   ⟸   ENSMUST00000168223
Ensembl Acc Id: ENSMUSP00000043910   ⟸   ENSMUST00000039537
RefSeq Acc Id: XP_036019261   ⟸   XM_036163368
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019260   ⟸   XM_036163367
- Peptide Label: isoform X1
- UniProtKB: Q8CB41 (UniProtKB/Swiss-Prot),   Q80V14 (UniProtKB/Swiss-Prot),   Q76LS9 (UniProtKB/Swiss-Prot),   Q6PES4 (UniProtKB/Swiss-Prot),   Q566I9 (UniProtKB/Swiss-Prot),   Q52KE4 (UniProtKB/Swiss-Prot),   Q3TEF4 (UniProtKB/Swiss-Prot),   Q8CHR2 (UniProtKB/Swiss-Prot),   B7ZMR0 (UniProtKB/TrEMBL)
Protein Domains
MINDY deubiquitinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q76LS9-F1-model_v2 AlphaFold Q76LS9 1-468 view protein structure

Promoters
RGD ID:6833785
Promoter ID:MM_KWN:35279
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:ENSMUST00000015856,   OTTMUST00000053409,   OTTMUST00000053410,   OTTMUST00000053411
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,084,961 - 95,085,602 (+)MPROMDB
RGD ID:6833196
Promoter ID:MM_KWN:35281
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008QJB.1,   UC008QJC.1,   UC008QJD.1,   UC008QJE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,086,206 - 95,087,237 (+)MPROMDB
RGD ID:6833763
Promoter ID:MM_KWN:35282
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000052368,   OTTMUST00000052369
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,088,761 - 95,090,162 (+)MPROMDB
RGD ID:6833767
Promoter ID:MM_KWN:35283
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:OTTMUST00000052367,   UC008QJF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,095,451 - 95,096,237 (+)MPROMDB
RGD ID:6847735
Promoter ID:MM_ACW:32539
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:4930504E06RIK.PSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,099,551 - 95,100,051 (+)MPROMDB
RGD ID:6881570
Promoter ID:EPDNEW_M4236
Type:multiple initiation site
Name:Mindy1_3
Description:Mus musculus MINDY lysine 48 deubiquitinase 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4237  EPDNEW_M4238  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,281,905 - 95,281,965EPDNEW
RGD ID:6881572
Promoter ID:EPDNEW_M4237
Type:initiation region
Name:Mindy1_1
Description:Mus musculus MINDY lysine 48 deubiquitinase 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4236  EPDNEW_M4238  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,282,923 - 95,282,983EPDNEW
RGD ID:6881574
Promoter ID:EPDNEW_M4238
Type:initiation region
Name:Mindy1_2
Description:Mus musculus MINDY lysine 48 deubiquitinase 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4236  EPDNEW_M4237  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,283,288 - 95,283,348EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922257 AgrOrtholog
Ensembl Genes ENSMUSG00000038712 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039537 ENTREZGENE
  ENSMUST00000039537.14 UniProtKB/Swiss-Prot
  ENSMUST00000107187 ENTREZGENE
  ENSMUST00000107187.9 UniProtKB/Swiss-Prot
  ENSMUST00000143498.2 UniProtKB/TrEMBL
  ENSMUST00000168223.2 UniProtKB/Swiss-Prot
InterPro MINDY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MINDY_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75007 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1922257 ENTREZGENE
NCBI Gene 75007 ENTREZGENE
PANTHER PTHR18063 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE MINDY-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MINDY_DUB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mindy1 PhenoGen
UniProt A0A0G2JDK1_MOUSE UniProtKB/TrEMBL
  B7ZMR0 ENTREZGENE, UniProtKB/TrEMBL
  MINY1_MOUSE UniProtKB/Swiss-Prot
  Q3TEF4 ENTREZGENE
  Q52KE4 ENTREZGENE
  Q566I9 ENTREZGENE
  Q6IS37_MOUSE UniProtKB/TrEMBL
  Q6PES4 ENTREZGENE
  Q76LS9 ENTREZGENE
  Q80V14 ENTREZGENE
  Q8CB41 ENTREZGENE
  Q8CHR2 ENTREZGENE
  Q91VW2_MOUSE UniProtKB/TrEMBL
  Q9CUK7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3TEF4 UniProtKB/Swiss-Prot
  Q52KE4 UniProtKB/Swiss-Prot
  Q566I9 UniProtKB/Swiss-Prot
  Q6PES4 UniProtKB/Swiss-Prot
  Q80V14 UniProtKB/Swiss-Prot
  Q8CB41 UniProtKB/Swiss-Prot
  Q8CHR2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-06 Mindy1  MINDY lysine 48 deubiquitinase 1  Fam63a  family with sequence similarity 63, member A  Symbol and/or name change 5135510 APPROVED