Plxna3 (plexin A3) - Rat Genome Database

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Gene: Plxna3 (plexin A3) Mus musculus
Analyze
Symbol: Plxna3
Name: plexin A3
RGD ID: 1558162
MGI Page MGI
Description: Exhibits semaphorin receptor activity. Involved in negative chemotaxis; nervous system development; and positive regulation of cytoskeleton organization. Predicted to localize to integral component of plasma membrane and semaphorin receptor complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; integumental system; and sensory organ. Orthologous to human PLXNA3 (plexin A3); INTERACTS WITH 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',5,5'-tetrachlorobiphenyl; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: KIAA4078; mKIAA4078; Pl; Ple; PlexA3; plexin 3; plexin-A3; Plxa3; Plxn3; Plxn4; SE; SEX
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,372,644 - 73,388,295 (+)NCBIGRCm39mm39
GRCm39 EnsemblX73,372,672 - 73,388,295 (+)Ensembl
GRCm38X74,328,290 - 74,344,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,329,066 - 74,344,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,574,405 - 71,590,028 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X70,581,819 - 70,596,483 (+)NCBImm8
CeleraX65,582,855 - 65,598,478 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX38.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Additional References at PubMed
PMID:8570614   PMID:8806646   PMID:8889548   PMID:10349636   PMID:10520994   PMID:10725340   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11241833   PMID:11306810  
PMID:11688557   PMID:12477932   PMID:12732138   PMID:14681479   PMID:15661641   PMID:15721238   PMID:15869472   PMID:16141072   PMID:16141073   PMID:16207871   PMID:16284245   PMID:16602821  
PMID:17145500   PMID:17356169   PMID:17626059   PMID:18262512   PMID:18287559   PMID:18464795   PMID:18489001   PMID:18523013   PMID:18617019   PMID:18727829   PMID:18786357   PMID:18804103  
PMID:19020035   PMID:19063725   PMID:19655386   PMID:19717441   PMID:20010807   PMID:20159958   PMID:20412781   PMID:20436479   PMID:20445064   PMID:20550939   PMID:21267068   PMID:21270798  
PMID:21677750   PMID:21835343   PMID:21873635   PMID:22368082   PMID:22723296   PMID:22726444   PMID:22988430   PMID:23991118   PMID:24179230   PMID:24619647   PMID:24952961   PMID:25313870  
PMID:25839327   PMID:25959730   PMID:26302206   PMID:26633812   PMID:27143756   PMID:28407732   PMID:28893946   PMID:29031500   PMID:29154130   PMID:30735130   PMID:31209173   PMID:31690636  
PMID:31995756   PMID:32325033  


Genomics

Comparative Map Data
Plxna3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,372,644 - 73,388,295 (+)NCBIGRCm39mm39
GRCm39 EnsemblX73,372,672 - 73,388,295 (+)Ensembl
GRCm38X74,328,290 - 74,344,689 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,329,066 - 74,344,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,574,405 - 71,590,028 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X70,581,819 - 70,596,483 (+)NCBImm8
CeleraX65,582,855 - 65,598,478 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX38.0NCBI
PLXNA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX154,458,281 - 154,477,779 (+)EnsemblGRCh38hg38GRCh38
GRCh38X154,458,281 - 154,477,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X153,686,621 - 153,706,118 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,339,817 - 153,355,179 (+)NCBINCBI36hg18NCBI36
Build 34X153,250,326 - 153,265,688NCBI
CeleraX153,847,674 - 153,863,036 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX142,263,786 - 142,279,038 (+)NCBIHuRef
CHM1_1X153,598,265 - 153,613,630 (+)NCBICHM1_1
Plxna3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,115,699 - 152,131,608 (+)NCBI
Rnor_6.0 EnsemblX156,363,405 - 156,379,189 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X156,363,400 - 156,379,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01152,103,535 - 152,119,342 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,261,781 - 160,277,570 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1135,765,043 - 135,780,832 (-)NCBICelera
Cytogenetic MapXq37NCBI
Plxna3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580957,860 - 972,772 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955580958,033 - 972,123 (+)NCBIChiLan1.0ChiLan1.0
PLXNA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X153,772,700 - 153,786,167 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,772,700 - 153,786,167 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X143,900,029 - 143,915,391 (+)NCBIMhudiblu_PPA_v0panPan3
PLXNA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,165,460 - 122,180,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,167,144 - 122,180,951 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,307,120 - 125,321,660 (+)NCBI
UMICH_Zoey_3.1X121,076,136 - 121,090,670 (+)NCBI
UNSW_CanFamBas_1.0X123,591,257 - 123,605,728 (+)NCBI
UU_Cfam_GSD_1.0X123,352,967 - 123,367,509 (+)NCBI
Plxna3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,471,987 - 119,488,955 (+)NCBI
SpeTri2.0NW_0049368091,209,787 - 1,226,726 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,984,190 - 124,997,067 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,982,307 - 124,997,098 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,588,358 - 143,603,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNA3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,706,354 - 128,721,971 (+)NCBI
ChlSab1.1 EnsemblX128,708,424 - 128,721,971 (+)Ensembl
Vero_WHO_p1.0NW_02366606566,695,159 - 66,710,804 (+)NCBI
Plxna3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946924,956 - 939,483 (+)NCBI

Position Markers
Son  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371691,659,979 - 91,660,228UniSTSGRCm37
Celera1692,736,439 - 92,736,688UniSTS
Cytogenetic MapXB-C1UniSTS
cM Map1664.0UniSTS
UniSTS:238042  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X74,344,122 - 74,344,412UniSTSGRCm38
MGSCv37X71,589,461 - 71,589,751UniSTSGRCm37
CeleraX65,597,911 - 65,598,201UniSTS
Cytogenetic MapXB-C1UniSTS
REN89674  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X74,333,722 - 74,334,051UniSTSGRCm38
MGSCv37X71,579,061 - 71,579,390UniSTSGRCm37
CeleraX65,587,511 - 65,587,840UniSTS
Cytogenetic MapXB-C1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7360056151324042Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3600000078000000Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX4083262187216531Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4243170076431843Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4265674676656858Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4698383880983961Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined48090244130864007Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5290000090700000Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X55000000150000000Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5567874589678745Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5872835492728354Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6230000090800000Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7150000097500000Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7241024678557206Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined72410246140302463Mouse
12879918Shm4_msperm head morphology 4 (mouse)X73028444103019114Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1784
Count of miRNA genes:728
Interacting mature miRNAs:917
Transcripts:ENSMUST00000004326, ENSMUST00000136114, ENSMUST00000137484, ENSMUST00000139323, ENSMUST00000142236, ENSMUST00000148726, ENSMUST00000152317, ENSMUST00000152376, ENSMUST00000154062
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ126001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ192479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D86950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000004326   ⟹   ENSMUSP00000004326
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,329,066 - 74,344,689 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136114
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,329,066 - 74,332,243 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137484
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,341,587 - 74,343,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,335,232 - 74,336,336 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142236
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,333,746 - 74,334,703 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148726
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,338,349 - 74,339,159 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152317
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,338,266 - 74,339,316 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,334,326 - 74,335,839 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154062
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 EnsemblX74,332,457 - 74,344,683 (+)Ensembl
RefSeq Acc Id: NM_001358129   ⟹   NP_001345058
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,672 - 73,388,295 (+)NCBI
GRCm38X74,329,066 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: NM_008883   ⟹   NP_032909
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,672 - 73,388,295 (+)NCBI
GRCm38X74,329,066 - 74,344,689 (+)NCBI
MGSCv37X71,574,405 - 71,590,028 (+)RGD
CeleraX65,582,855 - 65,598,478 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006527902   ⟹   XP_006527965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,662 - 73,388,295 (+)NCBI
GRCm38X74,329,056 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006527903   ⟹   XP_006527966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,377,461 - 73,388,295 (+)NCBI
GRCm38X74,333,856 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251258   ⟹   XP_030107118
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,644 - 73,388,295 (+)NCBI
GRCm38X74,328,290 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251259   ⟹   XP_030107119
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,663 - 73,388,295 (+)NCBI
GRCm38X74,329,057 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251260   ⟹   XP_030107120
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,663 - 73,388,295 (+)NCBI
GRCm38X74,331,964 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251261   ⟹   XP_030107121
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,374,732 - 73,388,295 (+)NCBI
GRCm38X74,331,126 - 74,344,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161854   ⟹   XP_036017747
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,663 - 73,388,295 (+)NCBI
RefSeq Acc Id: XM_036161855   ⟹   XP_036017748
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X73,372,663 - 73,388,295 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_032909   ⟸   NM_008883
- Peptide Label: isoform 1 precursor
- UniProtKB: P70208 (UniProtKB/Swiss-Prot),   A0A158SIT4 (UniProtKB/TrEMBL),   Q571A4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006527965   ⟸   XM_006527902
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006527966   ⟸   XM_006527903
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030107118   ⟸   XM_030251258
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030107119   ⟸   XM_030251259
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001345058   ⟸   NM_001358129
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: XP_030107121   ⟸   XM_030251261
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030107120   ⟸   XM_030251260
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000004326   ⟸   ENSMUST00000004326
RefSeq Acc Id: XP_036017748   ⟸   XM_036161855
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036017747   ⟸   XM_036161854
- Peptide Label: isoform X3
Protein Domains
IPT/TIG   Plexin_cytopl   Sema

Promoters
RGD ID:6846105
Promoter ID:MM_KWN:60807
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:NM_008883,   OTTMUST00000046858
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,574,116 - 71,574,616 (+)MPROMDB
RGD ID:6846107
Promoter ID:MM_KWN:60810
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000046861
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,579,451 - 71,579,951 (+)MPROMDB
RGD ID:6846108
Promoter ID:MM_KWN:60811
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000046862,   OTTMUST00000046863
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,583,041 - 71,583,752 (+)MPROMDB
RGD ID:6846109
Promoter ID:MM_KWN:60812
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000046864
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,586,921 - 71,587,421 (+)MPROMDB
RGD ID:13680792
Promoter ID:EPDNEW_M24545
Type:single initiation site
Name:Plxna3_1
Description:Mus musculus plexin A3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X74,329,066 - 74,329,126EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107683 AgrOrtholog
Ensembl Genes ENSMUSG00000031398 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000004326 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000004326 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000154062 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IPT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIG2_plexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18846 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:107683 ENTREZGENE
NCBI Gene 18846 ENTREZGENE
PANTHER PTHR22625 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIG_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIG_plexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Plxna3 PhenoGen
PROSITE SEMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IPT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PSI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sema UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A158SIT4 ENTREZGENE, UniProtKB/TrEMBL
  A4FVD1_MOUSE UniProtKB/TrEMBL
  P70208 ENTREZGENE, UniProtKB/Swiss-Prot
  Q571A4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A5D6Q5 UniProtKB/Swiss-Prot
  Q684J0 UniProtKB/Swiss-Prot
  Q8BWZ5 UniProtKB/Swiss-Prot