Agbl3 (ATP/GTP binding protein-like 3) - Rat Genome Database

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Gene: Agbl3 (ATP/GTP binding protein-like 3) Mus musculus
Analyze
Symbol: Agbl3
Name: ATP/GTP binding protein-like 3
RGD ID: 1558047
MGI Page MGI
Description: Enables metallocarboxypeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in cytosol. Is expressed in brain; early embryo; genitourinary system; heart; and liver. Orthologous to human AGBL3 (AGBL carboxypeptidase 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2900053G10Rik; 4930431N21Rik; 6530406M24Rik; ATP/GTP-binding protein-like 3; carboxypeptidase 3, cytosolic; Ccp; CCP3; cytosolic carboxypeptidase 3; RIKEN cDNA 4930431N21 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39634,755,249 - 34,837,874 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl634,757,367 - 34,836,394 (+)EnsemblGRCm39 Ensembl
GRCm38634,780,432 - 34,860,939 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl634,780,432 - 34,859,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv37634,730,432 - 34,807,932 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36634,711,027 - 34,735,783 (+)NCBIMGSCv36mm8
Celera634,780,877 - 34,858,071 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Cellular Component
cytoplasm  (IEA)
cytosol  (TAS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16952463   PMID:17244818   PMID:21873635   PMID:25103237  
PMID:26829768   PMID:28794449   PMID:29593216   PMID:37890489  


Genomics

Comparative Map Data
Agbl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39634,755,249 - 34,837,874 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl634,757,367 - 34,836,394 (+)EnsemblGRCm39 Ensembl
GRCm38634,780,432 - 34,860,939 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl634,780,432 - 34,859,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv37634,730,432 - 34,807,932 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36634,711,027 - 34,735,783 (+)NCBIMGSCv36mm8
Celera634,780,877 - 34,858,071 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map615.13NCBI
AGBL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387134,986,508 - 135,135,778 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7134,986,508 - 135,147,963 (+)EnsemblGRCh38hg38GRCh38
GRCh377134,671,259 - 134,820,530 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367134,321,802 - 134,386,337 (+)NCBINCBI36Build 36hg18NCBI36
Celera7129,408,666 - 129,558,005 (+)NCBICelera
Cytogenetic Map7q33NCBI
HuRef7128,973,846 - 129,123,181 (+)NCBIHuRef
CHM1_17134,605,192 - 134,754,487 (+)NCBICHM1_1
T2T-CHM13v2.07136,294,285 - 136,443,620 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27134,015,578 - 134,164,887 (+)NCBI
Agbl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8464,416,139 - 64,498,987 (+)NCBIGRCr8
mRatBN7.2463,448,789 - 63,535,538 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl463,453,940 - 63,531,188 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0462,293,158 - 62,377,740 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl462,299,044 - 62,376,533 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0462,030,266 - 62,108,476 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4462,167,594 - 62,256,297 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera458,499,976 - 58,584,581 (+)NCBICelera
Cytogenetic Map4q22NCBI
Agbl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554947,498,524 - 7,568,888 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554947,497,964 - 7,570,137 (-)NCBIChiLan1.0ChiLan1.0
AGBL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26171,802,305 - 171,958,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1723,818,551 - 23,969,164 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07126,951,316 - 127,100,608 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17139,456,539 - 139,604,544 (+)NCBIpanpan1.1PanPan1.1panPan2
AGBL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11613,018,349 - 13,076,435 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1613,020,927 - 13,077,434 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1614,031,341 - 14,088,639 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01612,999,817 - 13,057,376 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1613,001,621 - 13,057,396 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11613,441,791 - 13,498,757 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01612,541,078 - 12,598,410 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01612,680,226 - 12,737,405 (-)NCBIUU_Cfam_GSD_1.0
Agbl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511820,656,166 - 20,728,239 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936579789,888 - 860,201 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGBL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1814,164,658 - 14,262,611 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11814,163,354 - 14,265,504 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21814,970,743 - 15,071,886 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGBL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121103,683,209 - 103,806,270 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21103,684,067 - 103,805,753 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666072161,053 - 723,426 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Agbl3
2263 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2318
Count of miRNA genes:800
Interacting mature miRNAs:1065
Transcripts:ENSMUST00000115009, ENSMUST00000115012, ENSMUST00000115014, ENSMUST00000115016, ENSMUST00000115017, ENSMUST00000135304, ENSMUST00000143474, ENSMUST00000148834, ENSMUST00000155726, ENSMUST00000155890
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
11352717Obrq2a_mobesity resistance QTL 2a (mouse)63169434134847895Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
10043868Cia6b_mcollagen induced arthritis QTL 6b (mouse)Not determined63471159838946537Mouse

Markers in Region
RH129130  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38634,785,280 - 34,785,462UniSTSGRCm38
MGSCv37634,735,280 - 34,735,462UniSTSGRCm37
Celera634,785,744 - 34,785,926UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map6B1UniSTS
cM Map615.14UniSTS
37.MHAa63d1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38634,787,935 - 34,788,084UniSTSGRCm38
MGSCv37634,737,935 - 34,738,084UniSTSGRCm37
Celera634,788,154 - 34,788,303UniSTS
Cytogenetic Map6B1UniSTS
Whitehead_YAC6 UniSTS
Agbl3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38634,799,133 - 34,799,573UniSTSGRCm38
MGSCv37634,749,133 - 34,749,573UniSTSGRCm37
Celera634,799,352 - 34,799,792UniSTS
Cytogenetic Map6B1UniSTS
cM Map6 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ867031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ867032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000115009   ⟹   ENSMUSP00000110661
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,825 - 34,762,618 (+)Ensembl
GRCm38.p6 Ensembl634,780,890 - 34,785,683 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115012   ⟹   ENSMUSP00000110664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,810 - 34,762,654 (+)Ensembl
GRCm38.p6 Ensembl634,780,875 - 34,785,719 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115014   ⟹   ENSMUSP00000110666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,824 - 34,762,579 (+)Ensembl
GRCm38.p6 Ensembl634,780,889 - 34,785,644 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115016   ⟹   ENSMUSP00000110668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,367 - 34,834,867 (+)Ensembl
GRCm38.p6 Ensembl634,780,432 - 34,857,932 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115017   ⟹   ENSMUSP00000110669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,367 - 34,834,867 (+)Ensembl
GRCm38.p6 Ensembl634,780,432 - 34,857,932 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135304   ⟹   ENSMUSP00000118303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,377 - 34,780,724 (+)Ensembl
GRCm38.p6 Ensembl634,780,442 - 34,803,789 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,387 - 34,775,977 (+)Ensembl
GRCm38.p6 Ensembl634,780,452 - 34,799,042 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148834   ⟹   ENSMUSP00000116066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,783 - 34,836,394 (+)Ensembl
GRCm38.p6 Ensembl634,780,848 - 34,859,459 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,810 - 34,782,566 (+)Ensembl
GRCm38.p6 Ensembl634,780,875 - 34,805,631 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,811 - 34,778,545 (+)Ensembl
GRCm38.p6 Ensembl634,780,876 - 34,801,610 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl634,757,367 - 34,824,049 (+)Ensembl
GRCm38.p6 Ensembl634,780,432 - 34,847,114 (+)Ensembl
RefSeq Acc Id: NM_001289656   ⟹   NP_001276585
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,757,367 - 34,836,394 (+)NCBI
GRCm38634,780,432 - 34,859,459 (+)NCBI
Celera634,780,877 - 34,859,598 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289657   ⟹   NP_001276586
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,757,367 - 34,836,394 (+)NCBI
GRCm38634,780,432 - 34,859,459 (+)NCBI
Celera634,780,877 - 34,859,598 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289658   ⟹   NP_001276587
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,757,367 - 34,762,645 (+)NCBI
GRCm38634,780,432 - 34,785,710 (+)NCBI
Celera634,780,877 - 34,859,598 (+)NCBI
Sequence:
RefSeq Acc Id: NM_178630   ⟹   NP_848745
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,757,367 - 34,836,394 (+)NCBI
GRCm38634,780,432 - 34,859,459 (+)NCBI
MGSCv37634,730,432 - 34,807,932 (+)RGD
Celera634,780,877 - 34,859,598 (+)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506731   ⟹   XP_006506794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,837,874 (+)NCBI
GRCm38634,780,968 - 34,860,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006506734   ⟹   XP_006506797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,797,656 (+)NCBI
GRCm38634,780,968 - 34,820,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241501   ⟹   XP_011239803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,760,510 - 34,837,874 (+)NCBI
GRCm38634,783,575 - 34,860,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255658   ⟹   XP_030111518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,837,874 (+)NCBI
GRCm38634,781,840 - 34,860,939 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255659   ⟹   XP_030111519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,776,179 (+)NCBI
GRCm38634,780,968 - 34,799,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255660   ⟹   XP_030111520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,778,559 (+)NCBI
GRCm38634,780,902 - 34,801,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255661   ⟹   XP_030111521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,776,161 (+)NCBI
GRCm38634,780,968 - 34,799,226 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933646
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,791,663 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377500
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,835,054 (+)NCBI
GRCm38634,780,968 - 34,860,939 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377501
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39634,755,249 - 34,813,793 (+)NCBI
GRCm38634,780,968 - 34,836,858 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_848745   ⟸   NM_178630
- Peptide Label: isoform 2
- UniProtKB: Q8CDP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506797   ⟸   XM_006506734
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006506794   ⟸   XM_006506731
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001276585   ⟸   NM_001289656
- Peptide Label: isoform 1
- UniProtKB: Q8BSW4 (UniProtKB/Swiss-Prot),   Q09M07 (UniProtKB/Swiss-Prot),   Q09M06 (UniProtKB/Swiss-Prot),   B2RSY8 (UniProtKB/Swiss-Prot),   Q8R036 (UniProtKB/Swiss-Prot),   Q8CDP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276586   ⟸   NM_001289657
- Peptide Label: isoform 3
- UniProtKB: Q8CDP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276587   ⟸   NM_001289658
- Peptide Label: isoform 4
- UniProtKB: Q8CDP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011239803   ⟸   XM_011241501
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030111520   ⟸   XM_030255660
- Peptide Label: isoform X6
- UniProtKB: D6RI59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030111519   ⟸   XM_030255659
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030111521   ⟸   XM_030255661
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030111518   ⟸   XM_030255658
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000118303   ⟸   ENSMUST00000135304
RefSeq Acc Id: ENSMUSP00000110661   ⟸   ENSMUST00000115009
RefSeq Acc Id: ENSMUSP00000110669   ⟸   ENSMUST00000115017
RefSeq Acc Id: ENSMUSP00000110668   ⟸   ENSMUST00000115016
RefSeq Acc Id: ENSMUSP00000110666   ⟸   ENSMUST00000115014
RefSeq Acc Id: ENSMUSP00000110664   ⟸   ENSMUST00000115012
RefSeq Acc Id: ENSMUSP00000116066   ⟸   ENSMUST00000148834
Protein Domains
Peptidase M14   Peptidase M14 carboxypeptidase A

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CDP0-F1-model_v2 AlphaFold Q8CDP0 1-1006 view protein structure

Promoters
RGD ID:6838842
Promoter ID:MM_KWN:45544
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000115009,   ENSMUST00000115012,   ENSMUST00000115016,   NM_178630,   OTTMUST00000035136,   OTTMUST00000035139,   UC009BHM.1,   UC009BHN.1,   UC009BHO.1,   UC009BHQ.1,   UC009BHS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36634,729,956 - 34,731,112 (+)MPROMDB
RGD ID:6889302
Promoter ID:EPDNEW_M8102
Type:initiation region
Name:Agbl3_1
Description:Mus musculus ATP/GTP binding protein-like 3 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8103  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38634,780,442 - 34,780,502EPDNEW
RGD ID:6889304
Promoter ID:EPDNEW_M8103
Type:single initiation site
Name:Agbl3_2
Description:Mus musculus ATP/GTP binding protein-like 3 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8102  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38634,786,665 - 34,786,725EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923473 AgrOrtholog
Ensembl Genes ENSMUSG00000038836 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000115009.2 UniProtKB/TrEMBL
  ENSMUST00000115012.8 UniProtKB/TrEMBL
  ENSMUST00000115014 ENTREZGENE
  ENSMUST00000115014.8 UniProtKB/Swiss-Prot
  ENSMUST00000115016 ENTREZGENE
  ENSMUST00000115016.8 UniProtKB/Swiss-Prot
  ENSMUST00000115017 ENTREZGENE
  ENSMUST00000115017.8 UniProtKB/Swiss-Prot
  ENSMUST00000135304 ENTREZGENE
  ENSMUST00000135304.8 UniProtKB/TrEMBL
  ENSMUST00000148834.8 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.3120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zn peptidases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pepdidase_M14_N UniProtKB/Swiss-Prot
  Peptidase_M14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76223 UniProtKB/Swiss-Prot
MGD MGI:1923473 ENTREZGENE
NCBI Gene 76223 ENTREZGENE
PANTHER CYTOSOLIC CARBOXYPEPTIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CYTOSOLIC CARBOXYPEPTIDASE 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pepdidase_M14_N UniProtKB/Swiss-Prot
  Peptidase_M14 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Agbl3 PhenoGen
PROSITE PEPTIDASE_M14 UniProtKB/Swiss-Prot
Superfamily-SCOP Zn-dependent exopeptidases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2RSY8 ENTREZGENE
  CBPC3_MOUSE UniProtKB/Swiss-Prot
  D3Z4P1_MOUSE UniProtKB/TrEMBL
  D6RI59 ENTREZGENE, UniProtKB/TrEMBL
  Q09M06 ENTREZGENE
  Q09M07 ENTREZGENE
  Q8BQP2_MOUSE UniProtKB/TrEMBL
  Q8BSW4 ENTREZGENE
  Q8CDP0 ENTREZGENE
  Q8R036 ENTREZGENE
UniProt Secondary B2RSY8 UniProtKB/Swiss-Prot
  Q09M06 UniProtKB/Swiss-Prot
  Q09M07 UniProtKB/Swiss-Prot
  Q8BSW4 UniProtKB/Swiss-Prot
  Q8R036 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Agbl3  ATP/GTP binding protein-like 3  4930431N21Rik  RIKEN cDNA 4930431N21 gene  Data merged from RGD:1611323 737654 PROVISIONAL