Cd207 (CD207 antigen) - Rat Genome Database
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Gene: Cd207 (CD207 antigen) Mus musculus
Analyze
Symbol: Cd207
Name: CD207 antigen
RGD ID: 1558017
MGI Page MGI
Description: Orthologous to human CD207 (CD207 molecule); INTERACTS WITH 1-chloro-2,4-dinitrobenzene; alpha-hexylcinnamaldehyde; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C-type lectin domain family 4 member K; La; Langerhans cell specific c-type lectin; langerin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,648,189 - 83,654,839 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,648,197 - 83,654,839 (-)Ensembl
GRCm38683,671,207 - 83,677,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,671,215 - 83,677,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,621,201 - 83,627,851 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,636,873 - 83,643,515 (-)NCBImm8
Celera685,653,930 - 85,660,605 (-)NCBICelera
Cytogenetic Map6C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10661407   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11777972   PMID:11978773   PMID:12925678   PMID:15191546   PMID:15601833   PMID:15894281   PMID:15897263  
PMID:16141072   PMID:16141073   PMID:16557233   PMID:16941665   PMID:17008386   PMID:17617591   PMID:18086861   PMID:18086862   PMID:18086865   PMID:18322168   PMID:18354155   PMID:18354196  
PMID:18591406   PMID:19124720   PMID:19168629   PMID:19218433   PMID:19342641   PMID:19342642   PMID:19843938   PMID:19858325   PMID:19923446   PMID:19995948   PMID:20008528   PMID:20038600  
PMID:20090769   PMID:20123960   PMID:20351191   PMID:20357252   PMID:20400709   PMID:20664170   PMID:20703247   PMID:20713888   PMID:20713892   PMID:20739947   PMID:20844203   PMID:21160044  
PMID:21262813   PMID:21267068   PMID:21297009   PMID:21389256   PMID:21469094   PMID:21482644   PMID:21486908   PMID:21536741   PMID:21630253   PMID:21782478   PMID:21844385   PMID:21998450  
PMID:22143886   PMID:22291181   PMID:22308317   PMID:22389312   PMID:22509018   PMID:22729248   PMID:22854622   PMID:22996662   PMID:23117802   PMID:23118208   PMID:23298832   PMID:23326231  
PMID:23352232   PMID:23685841   PMID:23706669   PMID:23754400   PMID:23754427   PMID:23935190   PMID:23966300   PMID:24019552   PMID:24019554   PMID:24092934   PMID:24126845   PMID:24284909  
PMID:24288007   PMID:24569709   PMID:24629018   PMID:24632738   PMID:24638167   PMID:24706879   PMID:24789914   PMID:25078666   PMID:25135299   PMID:25157821   PMID:25216727   PMID:25240383  
PMID:25243789   PMID:25411201   PMID:25516751   PMID:25680275   PMID:26071559   PMID:26076314   PMID:26231115   PMID:26341401   PMID:26386376   PMID:26431538   PMID:27304075   PMID:27424318  
PMID:27430407   PMID:27480124   PMID:27533013   PMID:27637148   PMID:27657168   PMID:27903635   PMID:27913566   PMID:27982014   PMID:28441413   PMID:28801233   PMID:28813662   PMID:28842467  
PMID:28893957   PMID:29138056   PMID:29158419   PMID:29343501   PMID:29515032   PMID:29571944   PMID:29631057   PMID:29871951   PMID:30254197   PMID:30930901   PMID:31088921   PMID:32213963  
PMID:32269339   PMID:32461368   PMID:33159073  


Genomics

Comparative Map Data
Cd207
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,648,189 - 83,654,839 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,648,197 - 83,654,839 (-)Ensembl
GRCm38683,671,207 - 83,677,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,671,215 - 83,677,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,621,201 - 83,627,851 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,636,873 - 83,643,515 (-)NCBImm8
Celera685,653,930 - 85,660,605 (-)NCBICelera
Cytogenetic Map6C3NCBI
CD207
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl270,830,211 - 70,835,816 (-)EnsemblGRCh38hg38GRCh38
GRCh38270,825,248 - 70,860,787 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37271,057,342 - 71,062,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,910,855 - 70,916,461 (-)NCBINCBI36hg18NCBI36
Build 34270,969,002 - 70,974,608NCBI
Celera270,908,034 - 70,913,641 (-)NCBI
Cytogenetic Map2p13.3NCBI
HuRef270,793,731 - 70,799,342 (-)NCBIHuRef
CHM1_1270,986,667 - 70,992,278 (-)NCBICHM1_1
Cd207
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24116,155,229 - 116,161,587 (-)NCBI
Rnor_6.0 Ensembl4115,348,491 - 115,354,795 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04115,333,124 - 115,355,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04179,937,840 - 179,944,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,866,542 - 117,872,334 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4105,132,186 - 105,154,079 (-)NCBICelera
Cytogenetic Map4q34NCBI
Cd207
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,355,739 - 14,361,318 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,355,739 - 14,361,326 (+)NCBIChiLan1.0ChiLan1.0
CD207
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A72,006,822 - 72,012,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,006,822 - 72,012,421 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A70,893,068 - 70,898,668 (-)NCBIMhudiblu_PPA_v0panPan3
CD207
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,186,698 - 69,190,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cd207
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649115,029,086 - 15,079,067 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD207
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,668,223 - 71,675,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,668,233 - 71,674,871 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CD207
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,250,858 - 36,284,468 (+)NCBI
ChlSab1.1 Ensembl1436,278,722 - 36,283,445 (+)Ensembl
Cd207
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247622,528,394 - 2,561,720 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487426034Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64531405987426034Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65117915085179300Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7132262186275719Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:140
Interacting mature miRNAs:159
Transcripts:ENSMUST00000037882
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000037882   ⟹   ENSMUSP00000040746
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl683,671,215 - 83,677,857 (-)Ensembl
RefSeq Acc Id: NM_144943   ⟹   NP_659192
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,648,189 - 83,654,839 (-)NCBI
GRCm38683,671,207 - 83,677,857 (-)ENTREZGENE
MGSCv37683,621,201 - 83,627,851 (-)RGD
Celera685,653,930 - 85,660,605 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506139   ⟹   XP_006506202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,648,189 - 83,654,821 (-)NCBI
GRCm38683,671,207 - 83,677,839 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_659192   ⟸   NM_144943
- UniProtKB: Q8VBX4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506202   ⟸   XM_006506139
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000040746   ⟸   ENSMUST00000037882
Protein Domains
C-type lectin

Promoters
RGD ID:6890178
Promoter ID:EPDNEW_M8540
Type:single initiation site
Name:Cd207_1
Description:Mus musculus CD207 antigen , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,677,810 - 83,677,870EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2180021 AgrOrtholog
Ensembl Genes ENSMUSG00000034783 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000040746 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000037882 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  C-type_lectin_CS UniProtKB/Swiss-Prot
  CD209-like_CTLD UniProtKB/Swiss-Prot
  CTDL_fold UniProtKB/Swiss-Prot
KEGG Report mmu:246278 UniProtKB/Swiss-Prot
MGD MGI:2180021 ENTREZGENE
NCBI Gene 246278 ENTREZGENE
Pfam Lectin_C UniProtKB/Swiss-Prot
PhenoGen Cd207 PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/Swiss-Prot
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
SMART CLECT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56436 UniProtKB/Swiss-Prot
UniProt CLC4K_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8R442 UniProtKB/Swiss-Prot