Vrk3 (vaccinia related kinase 3) - Rat Genome Database

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Gene: Vrk3 (vaccinia related kinase 3) Mus musculus
Analyze
Symbol: Vrk3
Name: vaccinia related kinase 3
RGD ID: 1558006
MGI Page MGI
Description: Enables protein phosphatase activator activity and protein phosphatase binding activity. Acts upstream of or within negative regulation of ERK1 and ERK2 cascade. Located in nucleus. Is expressed in several structures, including dorsal mesogastrium; hemolymphoid system; liver; metanephros; and yolk sac. Used to study autism spectrum disorder. Orthologous to human VRK3 (VRK serine/threonine kinase 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI428238; inactive serine/threonine-protein kinase VRK3; serine/threonine-protein kinase VRK3; serine/threonine-protein pseudokinase VRK3; vaccinia-related kinase 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18308   Gm4927  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,398,049 - 44,426,939 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,397,837 - 44,426,939 (+)EnsemblGRCm39 Ensembl
GRCm38744,748,629 - 44,777,515 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,748,413 - 44,777,515 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,003,999 - 52,032,885 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,616,671 - 44,645,557 (+)NCBIMGSCv36mm8
Celera740,198,945 - 40,227,831 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8049130   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11986327   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12782311   PMID:14610273   PMID:14645249  
PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18035061   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22572157   PMID:25899223  
PMID:27346674   PMID:28412365   PMID:28899869   PMID:30595499   PMID:33374598   PMID:38355793  


Genomics

Comparative Map Data
Vrk3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,398,049 - 44,426,939 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,397,837 - 44,426,939 (+)EnsemblGRCm39 Ensembl
GRCm38744,748,629 - 44,777,515 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,748,413 - 44,777,515 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,003,999 - 52,032,885 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,616,671 - 44,645,557 (+)NCBIMGSCv36mm8
Celera740,198,945 - 40,227,831 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.9NCBI
VRK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,976,468 - 50,025,372 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,976,468 - 50,025,946 (-)EnsemblGRCh38hg38GRCh38
GRCh371950,479,725 - 50,528,629 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,171,536 - 55,220,617 (-)NCBINCBI36Build 36hg18NCBI36
Build 341955,171,539 - 55,220,448NCBI
Celera1947,348,980 - 47,398,065 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,855,961 - 46,904,997 (-)NCBIHuRef
CHM1_11950,481,568 - 50,530,969 (-)NCBICHM1_1
T2T-CHM13v2.01952,976,576 - 53,025,796 (-)NCBIT2T-CHM13v2.0
Vrk3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,379,903 - 104,407,278 (+)NCBIGRCr8
mRatBN7.2195,243,344 - 95,270,780 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,243,364 - 95,270,780 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,628,842 - 100,656,172 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,101,508 - 109,128,838 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,391,909 - 102,419,239 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,755,622 - 100,783,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,755,682 - 100,783,004 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,820,266 - 101,847,652 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,231,170 - 95,258,496 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera189,505,421 - 89,532,742 (+)NCBICelera
Cytogenetic Map1q22NCBI
Vrk3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559945,490 - 969,700 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955559933,053 - 967,998 (+)NCBIChiLan1.0ChiLan1.0
VRK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,091,353 - 56,140,123 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11958,012,394 - 58,061,143 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,988,994 - 47,037,962 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,904,653 - 55,953,505 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,904,653 - 55,953,505 (-)Ensemblpanpan1.1panPan2
VRK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,564,151 - 106,601,321 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,564,110 - 106,598,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,147,490 - 106,184,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,085,495 - 107,122,722 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,085,492 - 107,122,705 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,757,826 - 106,795,030 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,399,728 - 106,436,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,240,045 - 107,277,262 (+)NCBIUU_Cfam_GSD_1.0
Vrk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,128,139 - 22,164,014 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368894,064 - 40,345 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368894,129 - 40,049 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VRK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,973,782 - 55,030,716 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,973,734 - 55,041,607 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,754,926 - 50,791,580 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VRK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,121,854 - 43,166,292 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,119,123 - 43,161,025 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,100,812 - 23,144,759 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vrk3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,326,701 - 4,351,998 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,320,832 - 4,352,257 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vrk3
1638 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1518
Count of miRNA genes:627
Interacting mature miRNAs:755
Transcripts:ENSMUST00000002275, ENSMUST00000125705, ENSMUST00000134750, ENSMUST00000135783, ENSMUST00000136069, ENSMUST00000144515, ENSMUST00000147952, ENSMUST00000165957, ENSMUST00000171821
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
25394571Skmw59_mskeletal muscle weight 59, TA (mouse)74422494344675382Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
25394574Skmw61_mskeletal muscle weight 61, EDL (mouse)74422494344675382Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse

Markers in Region
AI428238  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,777,341 - 44,777,481UniSTSGRCm38
MGSCv37752,032,711 - 52,032,851UniSTSGRCm37
Celera740,227,657 - 40,227,797UniSTS
Cytogenetic Map7B4UniSTS
Whitehead/MRC_RH7560.55UniSTS
Vrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B4UniSTS
cM Map7 UniSTS
Vrk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B4UniSTS
cM Map7 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC150895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY115107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S71575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000002275   ⟹   ENSMUSP00000002275
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,397,837 - 44,426,939 (+)Ensembl
GRCm38.p6 Ensembl744,748,413 - 44,777,515 (+)Ensembl
Ensembl Acc Id: ENSMUST00000125705   ⟹   ENSMUSP00000122114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,398,367 - 44,403,379 (+)Ensembl
GRCm38.p6 Ensembl744,748,943 - 44,753,955 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,397,909 - 44,407,529 (+)Ensembl
GRCm38.p6 Ensembl744,748,485 - 44,758,105 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,401,539 - 44,408,831 (+)Ensembl
GRCm38.p6 Ensembl744,752,115 - 44,759,407 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136069
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,401,539 - 44,408,831 (+)Ensembl
GRCm38.p6 Ensembl744,752,115 - 44,759,407 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144515   ⟹   ENSMUSP00000119073
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,398,071 - 44,414,227 (+)Ensembl
GRCm38.p6 Ensembl744,748,647 - 44,764,803 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147952   ⟹   ENSMUSP00000130331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,398,060 - 44,426,939 (+)Ensembl
GRCm38.p6 Ensembl744,748,636 - 44,777,515 (+)Ensembl
Ensembl Acc Id: ENSMUST00000165957   ⟹   ENSMUSP00000131704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,398,070 - 44,412,479 (+)Ensembl
GRCm38.p6 Ensembl744,748,646 - 44,763,055 (+)Ensembl
Ensembl Acc Id: ENSMUST00000171821   ⟹   ENSMUSP00000132748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,398,008 - 44,409,193 (+)Ensembl
GRCm38.p6 Ensembl744,748,584 - 44,759,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208083
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,406,410 - 44,411,061 (+)Ensembl
GRCm38.p6 Ensembl744,756,986 - 44,761,637 (+)Ensembl
RefSeq Acc Id: NM_001419153   ⟹   NP_001406082
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,936 (+)NCBI
RefSeq Acc Id: NM_001419154   ⟹   NP_001406083
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,408,840 (+)NCBI
RefSeq Acc Id: NM_001419155   ⟹   NP_001406084
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,408,840 (+)NCBI
RefSeq Acc Id: NM_001419156   ⟹   NP_001406085
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,408,840 (+)NCBI
RefSeq Acc Id: NM_001419157   ⟹   NP_001406086
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,083 - 44,426,939 (+)NCBI
RefSeq Acc Id: NM_001419158   ⟹   NP_001406087
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,939 (+)NCBI
RefSeq Acc Id: NM_001419159   ⟹   NP_001406088
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,936 (+)NCBI
RefSeq Acc Id: NM_001419160   ⟹   NP_001406089
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,408,840 (+)NCBI
RefSeq Acc Id: NM_133945   ⟹   NP_598706
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,939 (+)NCBI
GRCm38744,748,629 - 44,777,515 (+)ENTREZGENE
MGSCv37752,003,999 - 52,032,885 (+)RGD
Celera740,198,945 - 40,227,831 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185025
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,939 (+)NCBI
RefSeq Acc Id: NR_185026
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,939 (+)NCBI
RefSeq Acc Id: NR_185027
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,398,049 - 44,426,934 (+)NCBI
RefSeq Acc Id: NP_598706   ⟸   NM_133945
- Peptide Label: isoform 1
- UniProtKB: Q921W6 (UniProtKB/Swiss-Prot),   Q8K3G5 (UniProtKB/Swiss-Prot),   Q3TAR6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000122114   ⟸   ENSMUST00000125705
Ensembl Acc Id: ENSMUSP00000119073   ⟸   ENSMUST00000144515
Ensembl Acc Id: ENSMUSP00000130331   ⟸   ENSMUST00000147952
Ensembl Acc Id: ENSMUSP00000132748   ⟸   ENSMUST00000171821
Ensembl Acc Id: ENSMUSP00000131704   ⟸   ENSMUST00000165957
Ensembl Acc Id: ENSMUSP00000002275   ⟸   ENSMUST00000002275
RefSeq Acc Id: NP_001406087   ⟸   NM_001419158
- Peptide Label: isoform 1
- UniProtKB: Q8K3G5 (UniProtKB/Swiss-Prot),   Q921W6 (UniProtKB/Swiss-Prot),   Q3TAR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406088   ⟸   NM_001419159
- Peptide Label: isoform 1
- UniProtKB: Q8K3G5 (UniProtKB/Swiss-Prot),   Q921W6 (UniProtKB/Swiss-Prot),   Q3TAR6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406082   ⟸   NM_001419153
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001406089   ⟸   NM_001419160
- Peptide Label: isoform 5
- UniProtKB: E9PY18 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406084   ⟸   NM_001419155
- Peptide Label: isoform 4
- UniProtKB: E9PY18 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406085   ⟸   NM_001419156
- Peptide Label: isoform 5
- UniProtKB: E9PY18 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406083   ⟸   NM_001419154
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001406086   ⟸   NM_001419157
- Peptide Label: isoform 1
- UniProtKB: Q8K3G5 (UniProtKB/Swiss-Prot),   Q921W6 (UniProtKB/Swiss-Prot),   Q3TAR6 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase   Zinc-ribbon

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3G5-F1-model_v2 AlphaFold Q8K3G5 1-453 view protein structure

Promoters
RGD ID:8663891
Promoter ID:EPDNEW_M9977
Type:multiple initiation site
Name:Vrk3_1
Description:Mus musculus vaccinia related kinase 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38744,748,625 - 44,748,685EPDNEW
RGD ID:6842328
Promoter ID:MM_KWN:50289
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000052987,   OTTMUST00000052989,   OTTMUST00000052990,   UC009GQS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,003,851 - 52,004,417 (+)MPROMDB
RGD ID:6842330
Promoter ID:MM_KWN:50290
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000052988,   OTTMUST00000052991,   OTTMUST00000052992,   OTTMUST00000052993
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,007,511 - 52,008,011 (+)MPROMDB
RGD ID:6842329
Promoter ID:MM_KWN:50291
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Brain,   Kidney,   Lung
Transcripts:UC009GQT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,025,351 - 52,025,962 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2182465 AgrOrtholog
Ensembl Genes ENSMUSG00000002205 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002275 ENTREZGENE
  ENSMUST00000002275.15 UniProtKB/Swiss-Prot
  ENSMUST00000125705.9 UniProtKB/TrEMBL
  ENSMUST00000135783 ENTREZGENE
  ENSMUST00000136069 ENTREZGENE
  ENSMUST00000144515.9 UniProtKB/TrEMBL
  ENSMUST00000147952 ENTREZGENE
  ENSMUST00000147952.9 UniProtKB/TrEMBL
  ENSMUST00000165957.8 UniProtKB/TrEMBL
  ENSMUST00000171821.8 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CK1_Ser-Thr_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_ribbon_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:101568 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2182465 ENTREZGENE
NCBI Gene 101568 ENTREZGENE
PANTHER CASEIN KINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INACTIVE SERINE/THREONINE-PROTEIN KINASE VRK3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zinc_ribbon_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vrk3 PhenoGen
PROSITE PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3Z188_MOUSE UniProtKB/TrEMBL
  D3Z2U5_MOUSE UniProtKB/TrEMBL
  E9PW85_MOUSE UniProtKB/TrEMBL
  E9PY18 ENTREZGENE, UniProtKB/TrEMBL
  E9Q754_MOUSE UniProtKB/TrEMBL
  Q3TAR6 ENTREZGENE, UniProtKB/TrEMBL
  Q8K3G5 ENTREZGENE
  Q921W6 ENTREZGENE
  VRK3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q921W6 UniProtKB/Swiss-Prot