Ntng1 (netrin G1) - Rat Genome Database

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Gene: Ntng1 (netrin G1) Mus musculus
Analyze
Symbol: Ntng1
Name: netrin G1
RGD ID: 1557996
MGI Page MGI
Description: Predicted to have cell-cell adhesion mediator activity. Involved in several processes, including regulation of cell projection organization; regulation of neuron migration; and synaptic membrane adhesion. Localizes to Schaffer collateral - CA1 synapse; anchored component of presynaptic active zone membrane; and glutamatergic synapse. Is expressed in brain and enteric nervous system. Orthologous to human NTNG1 (netrin G1); INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A930010C08Rik; AI853992; laminet 1; laminet-1; Lmn; Lmnt1; MGC99878; netrin-G1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393109,687,366 - 110,057,291 (-)NCBIGRCm39mm39
GRCm39 Ensembl3109,687,356 - 110,051,327 (-)Ensembl
GRCm383109,780,050 - 110,149,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3109,780,040 - 110,144,011 (-)EnsemblGRCm38mm10GRCm38
MGSCv373109,582,968 - 109,946,390 (-)NCBIGRCm37mm9NCBIm37
MGSCv363109,909,161 - 110,271,285 (-)NCBImm8
Celera3112,112,977 - 112,463,175 (-)NCBICelera
Cytogenetic Map3F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10964959   PMID:11042159   PMID:11076861   PMID:11804778   PMID:11906208   PMID:12477932   PMID:15368895   PMID:15457507   PMID:15489334   PMID:15664173  
PMID:15741177   PMID:16141072   PMID:16141073   PMID:16284245   PMID:16602821   PMID:16980967   PMID:17145500   PMID:17329426   PMID:17721516   PMID:17785411   PMID:18287559   PMID:19521500  
PMID:20562862   PMID:21512572   PMID:21795542   PMID:21873635   PMID:21946559   PMID:23426694   PMID:23658181   PMID:23986473   PMID:24441682   PMID:24642214   PMID:24803655   PMID:24952961  
PMID:25201528   PMID:25411505   PMID:26633812   PMID:26633881   PMID:26659141   PMID:26746425   PMID:26951610   PMID:27223325   PMID:27345935   PMID:27384060   PMID:27779093   PMID:28074533  
PMID:28558017   PMID:29031500   PMID:30635555   PMID:30868103   PMID:31692205   PMID:32348754   PMID:32868762   PMID:32968276  


Genomics

Comparative Map Data
Ntng1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393109,687,366 - 110,057,291 (-)NCBIGRCm39mm39
GRCm39 Ensembl3109,687,356 - 110,051,327 (-)Ensembl
GRCm383109,780,050 - 110,149,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3109,780,040 - 110,144,011 (-)EnsemblGRCm38mm10GRCm38
MGSCv373109,582,968 - 109,946,390 (-)NCBIGRCm37mm9NCBIm37
MGSCv363109,909,161 - 110,271,285 (-)NCBImm8
Celera3112,112,977 - 112,463,175 (-)NCBICelera
Cytogenetic Map3F3NCBI
NTNG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1107,140,007 - 107,484,923 (+)EnsemblGRCh38hg38GRCh38
GRCh381107,140,017 - 107,484,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371107,682,710 - 108,027,545 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361107,484,268 - 107,825,998 (+)NCBINCBI36hg18NCBI36
Build 341107,394,786 - 107,736,517NCBI
Celera1105,857,329 - 106,199,221 (+)NCBI
Cytogenetic Map1p13.3NCBI
HuRef1105,628,484 - 105,970,399 (+)NCBIHuRef
CHM1_11107,797,518 - 108,139,409 (+)NCBICHM1_1
Ntng1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22197,462,785 - 197,827,681 (-)NCBI
Rnor_6.0 Ensembl2212,696,624 - 212,852,870 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02212,695,464 - 213,073,046 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02232,164,771 - 232,540,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42205,438,061 - 205,806,249 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2190,099,849 - 190,462,194 (-)NCBICelera
Cytogenetic Map2q41NCBI
Ntng1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543510,923,490 - 11,248,995 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543510,923,557 - 11,247,091 (+)NCBIChiLan1.0ChiLan1.0
NTNG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11108,782,831 - 109,131,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1108,790,654 - 109,127,016 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01109,666,955 - 110,012,880 (+)NCBIMhudiblu_PPA_v0panPan3
NTNG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1644,091,368 - 44,407,118 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl644,092,043 - 44,403,799 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha646,876,321 - 47,191,139 (-)NCBI
ROS_Cfam_1.0644,370,414 - 44,691,951 (-)NCBI
UMICH_Zoey_3.1644,103,380 - 44,424,632 (-)NCBI
UNSW_CanFamBas_1.0644,072,563 - 44,386,000 (-)NCBI
UU_Cfam_GSD_1.0644,504,683 - 44,821,791 (-)NCBI
Ntng1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058116,385,588 - 116,732,725 (+)NCBI
SpeTri2.0NW_004936731844,718 - 1,184,179 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTNG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4112,287,043 - 112,614,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14112,280,899 - 112,615,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24123,051,572 - 123,403,728 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NTNG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12026,110,472 - 26,453,603 (-)NCBI
ChlSab1.1 Ensembl2026,112,017 - 26,275,352 (-)Ensembl
Vero_WHO_p1.0NW_02366603831,777,192 - 32,133,461 (+)NCBI
Ntng1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247723,164,503 - 3,493,574 (+)NCBI

Position Markers
12_5_5_1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383109,969,186 - 109,969,358UniSTSGRCm38
MGSCv373109,772,104 - 109,772,276UniSTSGRCm37
Celera3112,302,180 - 112,302,352UniSTS
Cytogenetic Map3F3UniSTS
Whitehead_YAC3 UniSTS
12_5_5_6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383110,051,757 - 110,051,931UniSTSGRCm38
MGSCv373109,854,675 - 109,854,849UniSTSGRCm37
Celera3112,384,868 - 112,385,042UniSTS
Cytogenetic Map3F3UniSTS
Whitehead_YAC3 UniSTS
UniSTS:234806  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383109,885,777 - 109,886,080UniSTSGRCm38
MGSCv373109,688,695 - 109,688,998UniSTSGRCm37
Celera3112,218,552 - 112,218,855UniSTS
Cytogenetic Map3F3UniSTS
AI853992  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383109,781,512 - 109,781,593UniSTSGRCm38
MGSCv373109,584,430 - 109,584,511UniSTSGRCm37
Celera3112,114,439 - 112,114,520UniSTS
Cytogenetic Map3F3UniSTS
Whitehead/MRC_RH31291.62UniSTS
Ntng1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F3UniSTS
cM Map3 UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33200000142700000Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316000000109800000Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316450000130370000Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328900000119100000Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330013439147599053Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337120713143647422Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)341000000116000000Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352300000137500000Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)368000000128600000Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379641414113641521Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381177336115177481Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382239727116239868Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383556675117556821Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383556675117556821Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383556675117556821Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383556675117556821Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383556675117556821Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383556675117556821Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383556675117556821Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383975596117975728Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384981602118981751Mouse
14746984Manh54_mmandible shape 54 (mouse)385381836119381836Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387301597125522587Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387320699121320699Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389232660137747247Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390469620124469756Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390470701124470701Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391092789125101432Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392344217126344334Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396700000148100000Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398830392132830548Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398841635132841734Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398841635132841734Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined399130456133130601Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100465596147339967Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100700000137500000Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101400000150100000Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103689010137689134Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107469620115830548Mouse
4141220Cia22_mcollagen induced arthritis 22 (mouse)Not determined3107469620125522588Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107469620125522588Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107469620147599053Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3110041233144041356Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4913
Count of miRNA genes:839
Interacting mature miRNAs:1200
Transcripts:ENSMUST00000051253, ENSMUST00000072596, ENSMUST00000106570, ENSMUST00000106571, ENSMUST00000106575, ENSMUST00000128219, ENSMUST00000131027, ENSMUST00000133268, ENSMUST00000138344, ENSMUST00000138953, ENSMUST00000156177
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB038662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB038663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB038664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB038665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB038666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB038667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF475078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL683824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB621591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR936848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000051253   ⟹   ENSMUSP00000052268
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3110,143,685 - 110,144,011 (-)Ensembl
RefSeq Acc Id: ENSMUST00000072596   ⟹   ENSMUSP00000072397
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106570   ⟹   ENSMUSP00000102180
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106571   ⟹   ENSMUSP00000102181
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000106575   ⟹   ENSMUSP00000102185
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128219   ⟹   ENSMUSP00000116579
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,781,115 - 110,143,475 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131027   ⟹   ENSMUSP00000118800
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133268   ⟹   ENSMUSP00000117371
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,780,046 - 110,144,011 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138344   ⟹   ENSMUSP00000120688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138953   ⟹   ENSMUSP00000116213
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,782,682 - 110,135,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156177   ⟹   ENSMUSP00000119534
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,780,040 - 110,143,004 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,830,958 - 110,135,468 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191116
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl3109,830,958 - 109,833,259 (-)Ensembl
RefSeq Acc Id: NM_001163348   ⟹   NP_001156820
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,687,366 - 110,050,788 (-)NCBI
GRCm383109,780,050 - 110,143,472 (-)NCBI
MGSCv373109,582,968 - 109,946,390 (-)RGD
Celera3112,112,977 - 112,463,175 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163349   ⟹   NP_001156821
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,687,366 - 110,050,788 (-)NCBI
GRCm383109,780,050 - 110,143,472 (-)NCBI
MGSCv373109,582,968 - 109,946,390 (-)RGD
Celera3112,112,977 - 112,463,175 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163350   ⟹   NP_001156822
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,687,366 - 110,050,788 (-)NCBI
GRCm383109,780,050 - 110,143,472 (-)NCBI
MGSCv373109,582,968 - 109,946,390 (-)RGD
Celera3112,112,977 - 112,463,175 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_030699   ⟹   NP_109624
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,687,366 - 110,050,788 (-)NCBI
GRCm383109,780,050 - 110,143,472 (-)NCBI
MGSCv373109,582,968 - 109,946,390 (-)RGD
Celera3112,112,977 - 112,463,175 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133488   ⟹   NP_597995
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,687,366 - 110,050,788 (-)NCBI
GRCm383109,780,050 - 110,143,472 (-)NCBI
MGSCv373109,582,968 - 109,946,390 (-)RGD
Celera3112,112,977 - 112,463,175 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502355   ⟹   XP_006502418
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,050,117 (-)NCBI
GRCm383109,781,106 - 110,142,804 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240291   ⟹   XP_011238593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,057,291 (-)NCBI
GRCm383109,781,106 - 110,149,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240292   ⟹   XP_011238594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,057,291 (-)NCBI
GRCm383109,781,106 - 110,149,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240293   ⟹   XP_011238595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,057,291 (-)NCBI
GRCm383109,781,106 - 110,149,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240294   ⟹   XP_011238596
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,057,291 (-)NCBI
GRCm383109,781,106 - 110,149,972 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240295   ⟹   XP_011238597
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,057,291 (-)NCBI
GRCm383109,781,106 - 110,149,972 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783784
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393109,688,422 - 110,057,291 (-)NCBI
GRCm383109,781,106 - 110,149,972 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001156820 (Get FASTA)   NCBI Sequence Viewer  
  NP_001156821 (Get FASTA)   NCBI Sequence Viewer  
  NP_001156822 (Get FASTA)   NCBI Sequence Viewer  
  NP_109624 (Get FASTA)   NCBI Sequence Viewer  
  NP_597995 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502418 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238593 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238594 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238595 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238596 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238597 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79881 (Get FASTA)   NCBI Sequence Viewer  
  AAL84778 (Get FASTA)   NCBI Sequence Viewer  
  AAL84779 (Get FASTA)   NCBI Sequence Viewer  
  AAL84780 (Get FASTA)   NCBI Sequence Viewer  
  AAL84781 (Get FASTA)   NCBI Sequence Viewer  
  AAL84782 (Get FASTA)   NCBI Sequence Viewer  
  AAL84783 (Get FASTA)   NCBI Sequence Viewer  
  AAL84784 (Get FASTA)   NCBI Sequence Viewer  
  AAL84785 (Get FASTA)   NCBI Sequence Viewer  
  AAL84786 (Get FASTA)   NCBI Sequence Viewer  
  AAL84787 (Get FASTA)   NCBI Sequence Viewer  
  BAB12005 (Get FASTA)   NCBI Sequence Viewer  
  BAB12006 (Get FASTA)   NCBI Sequence Viewer  
  BAB12007 (Get FASTA)   NCBI Sequence Viewer  
  BAB12008 (Get FASTA)   NCBI Sequence Viewer  
  BAB12009 (Get FASTA)   NCBI Sequence Viewer  
  BAB12010 (Get FASTA)   NCBI Sequence Viewer  
  BAB32225 (Get FASTA)   NCBI Sequence Viewer  
  BAC28717 (Get FASTA)   NCBI Sequence Viewer  
  BAC35475 (Get FASTA)   NCBI Sequence Viewer  
  BAD32353 (Get FASTA)   NCBI Sequence Viewer  
  EDL01997 (Get FASTA)   NCBI Sequence Viewer  
  EDL01998 (Get FASTA)   NCBI Sequence Viewer  
  EDL01999 (Get FASTA)   NCBI Sequence Viewer  
  EDL02000 (Get FASTA)   NCBI Sequence Viewer  
  EDL02001 (Get FASTA)   NCBI Sequence Viewer  
  EDL02002 (Get FASTA)   NCBI Sequence Viewer  
  Q8R4G0 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_109624   ⟸   NM_030699
- Peptide Label: isoform a precursor
- UniProtKB: Q8R4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_597995   ⟸   NM_133488
- Peptide Label: isoform e precursor
- UniProtKB: Q8R4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156820   ⟸   NM_001163348
- Peptide Label: isoform b precursor
- UniProtKB: Q8R4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156821   ⟸   NM_001163349
- Peptide Label: isoform c precursor
- UniProtKB: Q8R4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001156822   ⟸   NM_001163350
- Peptide Label: isoform d precursor
- UniProtKB: Q8R4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502418   ⟸   XM_006502355
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011238597   ⟸   XM_011240295
- Peptide Label: isoform X5
- UniProtKB: Q8R4G0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238596   ⟸   XM_011240294
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011238595   ⟸   XM_011240293
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011238594   ⟸   XM_011240292
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011238593   ⟸   XM_011240291
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000116213   ⟸   ENSMUST00000138953
RefSeq Acc Id: ENSMUSP00000052268   ⟸   ENSMUST00000051253
RefSeq Acc Id: ENSMUSP00000120688   ⟸   ENSMUST00000138344
RefSeq Acc Id: ENSMUSP00000117371   ⟸   ENSMUST00000133268
RefSeq Acc Id: ENSMUSP00000102181   ⟸   ENSMUST00000106571
RefSeq Acc Id: ENSMUSP00000102180   ⟸   ENSMUST00000106570
RefSeq Acc Id: ENSMUSP00000102185   ⟸   ENSMUST00000106575
RefSeq Acc Id: ENSMUSP00000118800   ⟸   ENSMUST00000131027
RefSeq Acc Id: ENSMUSP00000072397   ⟸   ENSMUST00000072596
RefSeq Acc Id: ENSMUSP00000116579   ⟸   ENSMUST00000128219
RefSeq Acc Id: ENSMUSP00000119534   ⟸   ENSMUST00000156177
Promoters
RGD ID:6882124
Promoter ID:EPDNEW_M4513
Type:single initiation site
Name:Ntng1_1
Description:Mus musculus netrin G1 , transcript variant f, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383109,995,512 - 109,995,572EPDNEW
RGD ID:6882126
Promoter ID:EPDNEW_M4514
Type:multiple initiation site
Name:AK053689_2
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4515  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383110,143,818 - 110,143,878EPDNEW
RGD ID:6882128
Promoter ID:EPDNEW_M4515
Type:initiation region
Name:AK053689_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4514  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383110,143,943 - 110,144,003EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1934028 AgrOrtholog
Ensembl Genes ENSMUSG00000059857 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000052268 UniProtKB/TrEMBL
  ENSMUSP00000072397 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000102180 UniProtKB/TrEMBL
  ENSMUSP00000102181 UniProtKB/TrEMBL
  ENSMUSP00000102185 UniProtKB/TrEMBL
  ENSMUSP00000116213 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116579 UniProtKB/TrEMBL
  ENSMUSP00000117371 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118800 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000119534 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000120688 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000051253 UniProtKB/TrEMBL
  ENSMUST00000072596 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000106570 UniProtKB/TrEMBL
  ENSMUST00000106571 UniProtKB/TrEMBL
  ENSMUST00000106575 UniProtKB/TrEMBL
  ENSMUST00000128219 UniProtKB/TrEMBL
  ENSMUST00000131027 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000133268 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000138344 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000138953 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000156177 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.1490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  EGF_laminin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:80883 UniProtKB/Swiss-Prot
MGD MGI:1934028 ENTREZGENE
NCBI Gene 80883 ENTREZGENE
Pfam Laminin_EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ntng1 PhenoGen
PROSITE EGF_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMININ_NTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EGF_Lam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LamNT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F7CVQ1_MOUSE UniProtKB/TrEMBL
  F8WJ48_MOUSE UniProtKB/TrEMBL
  F8WJ50_MOUSE UniProtKB/TrEMBL
  F8WJ51_MOUSE UniProtKB/TrEMBL
  NTNG1_MOUSE UniProtKB/Swiss-Prot
  Q8BPN6_MOUSE UniProtKB/TrEMBL
  Q8R4G0 ENTREZGENE
  Q9CTQ0_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q68FE5 UniProtKB/Swiss-Prot
  Q69ZU3 UniProtKB/Swiss-Prot
  Q8R4F3 UniProtKB/Swiss-Prot
  Q8R4F4 UniProtKB/Swiss-Prot
  Q8R4F5 UniProtKB/Swiss-Prot
  Q8R4F6 UniProtKB/Swiss-Prot
  Q8R4F7 UniProtKB/Swiss-Prot
  Q8R4F8 UniProtKB/Swiss-Prot
  Q8R4F9 UniProtKB/Swiss-Prot
  Q9ESR3 UniProtKB/Swiss-Prot
  Q9ESR4 UniProtKB/Swiss-Prot
  Q9ESR5 UniProtKB/Swiss-Prot
  Q9ESR6 UniProtKB/Swiss-Prot
  Q9ESR7 UniProtKB/Swiss-Prot
  Q9ESR8 UniProtKB/Swiss-Prot