Cdc42se1 (CDC42 small effector 1) - Rat Genome Database

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Gene: Cdc42se1 (CDC42 small effector 1) Mus musculus
Analyze
Symbol: Cdc42se1
Name: CDC42 small effector 1
RGD ID: 1557993
MGI Page MGI
Description: Predicted to enable small GTPase binding activity. Predicted to be involved in phagocytosis and regulation of Rho protein signal transduction. Predicted to act upstream of or within negative regulation of JNK cascade; regulation of cell shape; and small GTPase-mediated signal transduction. Predicted to be located in cell cortex and cell junction. Predicted to be active in plasma membrane. Is expressed in cerebral cortex and cerebral cortex ventricular layer. Orthologous to human CDC42SE1 (CDC42 small effector 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1300002M12Rik; AW558204; CDC42 small effector protein 1; Cdcse1; SC; SCIP1; small protein effector 1 of Cdc42; Spe; Spec1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,135,735 - 95,143,735 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,136,043 - 95,143,720 (+)EnsemblGRCm39 Ensembl
GRCm38395,228,424 - 95,236,424 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,228,732 - 95,236,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,032,702 - 95,040,331 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,314,184 - 95,321,813 (+)NCBIMGSCv36mm8
Celera396,659,877 - 96,667,458 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
aflatoxin B1  (ISO)
amiodarone  (ISO)
antirheumatic drug  (ISO)
aristolochic acids  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (EXP)
estriol  (EXP)
ethanol  (EXP)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
FR900359  (ISO)
furan  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glycidyl methacrylate  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
lithium chloride  (ISO)
methotrexate  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (ISO)
ochratoxin A  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
piperonyl butoxide  (ISO)
pirinixic acid  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell cortex  (ISS)
cell junction  (IEA,ISO)
cytoskeleton  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10816584   PMID:10910960   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17967808   PMID:18799693   PMID:19521500   PMID:21677750   PMID:21873635   PMID:22235033   PMID:32840212   PMID:34321999  


Genomics

Comparative Map Data
Cdc42se1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,135,735 - 95,143,735 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,136,043 - 95,143,720 (+)EnsemblGRCm39 Ensembl
GRCm38395,228,424 - 95,236,424 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,228,732 - 95,236,409 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,032,702 - 95,040,331 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,314,184 - 95,321,813 (+)NCBIMGSCv36mm8
Celera396,659,877 - 96,667,458 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
CDC42SE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,050,985 - 151,059,622 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,050,971 - 151,070,325 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,023,461 - 151,032,098 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361149,290,071 - 149,298,749 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,836,532 - 147,845,123NCBI
Celera1124,138,756 - 124,147,427 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1122,400,859 - 122,409,533 (-)NCBIHuRef
CHM1_11152,418,769 - 152,427,442 (-)NCBICHM1_1
T2T-CHM13v2.01150,174,667 - 150,183,297 (-)NCBIT2T-CHM13v2.0
Cdc42se1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,494,692 - 185,502,519 (+)NCBIGRCr8
mRatBN7.22182,805,691 - 182,813,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,804,925 - 182,814,028 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,471,040 - 190,478,847 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,266,564 - 188,274,359 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,103,533 - 183,111,340 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02196,402,837 - 196,410,664 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2196,402,837 - 196,410,659 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,899,668 - 215,907,495 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42190,138,391 - 190,146,015 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2175,339,341 - 175,347,166 (+)NCBICelera
Cytogenetic Map2q34NCBI
Cdc42se1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955588423,091 - 429,917 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955588423,091 - 440,248 (-)NCBIChiLan1.0ChiLan1.0
CDC42SE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,773,658 - 98,782,649 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,528,046 - 98,535,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,400,094 - 126,408,769 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,047,765 - 130,056,447 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,047,765 - 130,056,447 (-)Ensemblpanpan1.1panPan2
CDC42SE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,138,497 - 60,146,344 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,140,632 - 60,155,099 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,584,496 - 59,589,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,154,355 - 61,162,174 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11759,985,803 - 59,991,178 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,070,704 - 60,076,079 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,798,258 - 60,803,633 (-)NCBIUU_Cfam_GSD_1.0
Cdc42se1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,238,782 - 22,242,417 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,268,195 - 1,276,361 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,268,202 - 1,276,485 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42SE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,164,024 - 98,180,576 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,171,937 - 98,180,577 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,424,892 - 107,433,555 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42SE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,633,187 - 12,636,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1641,319,304 - 41,319,540 (+)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl1641,319,304 - 41,319,540 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603812,216,613 - 12,225,513 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42se1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,768,827 - 18,774,859 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,768,765 - 18,774,859 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1398
Count of miRNA genes:543
Interacting mature miRNAs:626
Transcripts:ENSMUST00000053872, ENSMUST00000107199, ENSMUST00000107200, ENSMUST00000107201, ENSMUST00000149804
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse

Markers in Region
AW558204  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,236,179 - 95,236,264UniSTSGRCm38
MGSCv37395,040,101 - 95,040,186UniSTSGRCm37
Celera396,667,228 - 96,667,313UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31082.57UniSTS
MARC_16118-16119:1018032271:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,232,045 - 95,232,626UniSTSGRCm38
MGSCv37395,035,967 - 95,036,548UniSTSGRCm37
Celera396,663,094 - 96,663,675UniSTS
Cytogenetic Map3F2.1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000053872   ⟹   ENSMUSP00000052986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,136,043 - 95,143,720 (+)Ensembl
GRCm38.p6 Ensembl395,228,732 - 95,236,409 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107199   ⟹   ENSMUSP00000102817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,139,604 - 95,141,973 (+)Ensembl
GRCm38.p6 Ensembl395,232,293 - 95,234,662 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107200   ⟹   ENSMUSP00000102818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,139,598 - 95,141,851 (+)Ensembl
GRCm38.p6 Ensembl395,232,287 - 95,234,540 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107201   ⟹   ENSMUSP00000102819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,136,263 - 95,141,893 (+)Ensembl
GRCm38.p6 Ensembl395,228,952 - 95,234,582 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,136,121 - 95,139,692 (+)Ensembl
GRCm38.p6 Ensembl395,228,810 - 95,232,381 (+)Ensembl
RefSeq Acc Id: NM_001038708   ⟹   NP_001033797
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,136,254 - 95,143,735 (+)NCBI
GRCm38395,228,943 - 95,236,424 (+)NCBI
MGSCv37395,032,702 - 95,040,331 (+)RGD
Celera396,659,521 - 96,667,473 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172395   ⟹   NP_765983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,135,735 - 95,143,735 (+)NCBI
GRCm38395,228,424 - 95,236,424 (+)NCBI
MGSCv37395,032,702 - 95,040,331 (+)RGD
Celera396,659,521 - 96,667,473 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_765983   ⟸   NM_172395
- UniProtKB: Q8BHL7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001033797   ⟸   NM_001038708
- UniProtKB: Q8BHL7 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000102817   ⟸   ENSMUST00000107199
Ensembl Acc Id: ENSMUSP00000102818   ⟸   ENSMUST00000107200
Ensembl Acc Id: ENSMUSP00000102819   ⟸   ENSMUST00000107201
Ensembl Acc Id: ENSMUSP00000052986   ⟸   ENSMUST00000053872
Protein Domains
CRIB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BHL7-F1-model_v2 AlphaFold Q8BHL7 1-80 view protein structure

Promoters
RGD ID:6833565
Promoter ID:MM_KWN:35274
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_019914,   OTTMUST00000053322,   OTTMUST00000053326,   UC008QIV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,031,216 - 95,032,627 (+)MPROMDB
RGD ID:6833561
Promoter ID:MM_KWN:35275
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107199,   ENSMUST00000107200
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,035,311 - 95,036,287 (+)MPROMDB
RGD ID:6881558
Promoter ID:EPDNEW_M4230
Type:initiation region
Name:Cdc42se1_2
Description:Mus musculus CDC42 small effector 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4232  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,228,354 - 95,228,414EPDNEW
RGD ID:6881562
Promoter ID:EPDNEW_M4232
Type:initiation region
Name:Cdc42se1_1
Description:Mus musculus CDC42 small effector 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4230  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,228,777 - 95,228,837EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889510 AgrOrtholog
Ensembl Genes ENSMUSG00000046722 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053872 ENTREZGENE
  ENSMUST00000053872.12 UniProtKB/Swiss-Prot
  ENSMUST00000107199.2 UniProtKB/TrEMBL
  ENSMUST00000107200.8 UniProtKB/TrEMBL
  ENSMUST00000107201 ENTREZGENE
  ENSMUST00000107201.9 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.810.10 UniProtKB/Swiss-Prot
InterPro CRIB_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRIB_dom_sf UniProtKB/Swiss-Prot
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57912 UniProtKB/Swiss-Prot
MGD MGI:1889510 ENTREZGENE
NCBI Gene 57912 ENTREZGENE
PANTHER CDC42 SMALL EFFECTOR PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13502 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PBD UniProtKB/TrEMBL
PhenoGen Cdc42se1 PhenoGen
PROSITE CRIB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt C42S1_MOUSE UniProtKB/Swiss-Prot
  D3YUZ5_MOUSE UniProtKB/TrEMBL
  Q8BHL7 ENTREZGENE