Trub2 (TruB pseudouridine (psi) synthase family member 2) - Rat Genome Database

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Gene: Trub2 (TruB pseudouridine (psi) synthase family member 2) Mus musculus
Analyze
Symbol: Trub2
Name: TruB pseudouridine (psi) synthase family member 2
RGD ID: 1557985
MGI Page MGI
Description: Predicted to enable pseudouridine synthase activity. Predicted to be involved in mRNA pseudouridine synthesis and positive regulation of mitochondrial translation. Predicted to act upstream of or within mRNA processing and tRNA processing. Predicted to be located in mitochondrion and ribonucleoprotein granule. Is expressed in trunk unsegmented mesenchyme. Orthologous to human TRUB2 (TruB pseudouridine synthase family member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G430055L02Rik; mitochondrial mRNA pseudouridine synthase Trub2; probable tRNA pseudouridine synthase 2; pseudouridylate synthase TRUB2, mitochondrial; psi55 synthase TRUB2; tRNA pseudouridine 55 synthase TRUB2; TruB pseudouridine (psi) synthase homolog 2; truB pseudouridine synthase homolog 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,651,235 - 29,677,697 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,651,236 - 29,678,514 (-)EnsemblGRCm39 Ensembl
GRCm38229,761,223 - 29,787,671 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,761,224 - 29,788,502 (-)EnsemblGRCm38mm10GRCm38
MGSCv37229,631,631 - 29,643,191 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,598,120 - 29,610,511 (-)NCBIMGSCv36mm8
Celera229,483,186 - 29,494,746 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17095659  
PMID:18799693   PMID:21677750   PMID:27233670   PMID:29539633   PMID:30973865  


Genomics

Comparative Map Data
Trub2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,651,235 - 29,677,697 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,651,236 - 29,678,514 (-)EnsemblGRCm39 Ensembl
GRCm38229,761,223 - 29,787,671 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl229,761,224 - 29,788,502 (-)EnsemblGRCm38mm10GRCm38
MGSCv37229,631,631 - 29,643,191 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,598,120 - 29,610,511 (-)NCBIMGSCv36mm8
Celera229,483,186 - 29,494,746 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map220.57NCBI
TRUB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,305,159 - 128,322,447 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,305,159 - 128,322,447 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,067,438 - 131,084,726 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,111,217 - 130,124,518 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,150,949 - 128,164,251NCBI
Celera9101,722,300 - 101,735,601 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,684,458 - 100,697,568 (-)NCBIHuRef
CHM1_19131,222,417 - 131,235,732 (-)NCBICHM1_1
T2T-CHM13v2.09140,512,261 - 140,529,549 (-)NCBIT2T-CHM13v2.0
Trub2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,447,101 - 33,457,712 (-)NCBIGRCr8
mRatBN7.2313,049,220 - 13,059,836 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,033,745 - 13,059,930 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,124,481 - 16,134,606 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0324,709,442 - 24,719,567 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0322,960,609 - 22,970,720 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,338,479 - 8,348,746 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,338,484 - 8,348,746 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0313,681,668 - 13,691,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.438,769,049 - 8,774,733 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera37,827,370 - 7,837,496 (-)NCBICelera
Cytogenetic Map3p12NCBI
Trub2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955570814,725 - 837,116 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955570826,776 - 837,116 (-)NCBIChiLan1.0ChiLan1.0
TRUB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,030,055 - 11,046,076 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,032,414 - 11,048,425 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,427,032 - 99,444,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,098,193 - 128,112,237 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,098,221 - 128,111,909 (-)Ensemblpanpan1.1panPan2
TRUB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,194,123 - 55,203,881 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,194,024 - 55,203,477 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,389,063 - 54,398,834 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,116,207 - 56,125,979 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,115,584 - 56,126,047 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,875,823 - 54,885,590 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,190,040 - 55,199,810 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,281,970 - 55,291,742 (+)NCBIUU_Cfam_GSD_1.0
Trub2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,081,317 - 196,108,424 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648715,849,846 - 15,876,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRUB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,746,329 - 268,757,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,745,815 - 268,757,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,736,568 - 302,747,817 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRUB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,808,183 - 9,821,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660796,413,979 - 6,427,878 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trub2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,557,400 - 6,565,233 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,557,298 - 6,566,838 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trub2
659 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2939
Count of miRNA genes:818
Interacting mature miRNAs:1071
Transcripts:ENSMUST00000048044, ENSMUST00000113803, ENSMUST00000113807, ENSMUST00000148120, ENSMUST00000156846, ENSMUST00000175644, ENSMUST00000176167, ENSMUST00000176312, ENSMUST00000177133, ENSMUST00000177467
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_110962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK043949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU079587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU053791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU707805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000048044   ⟹   ENSMUSP00000041848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,666,122 - 29,678,514 (-)Ensembl
GRCm38.p6 Ensembl229,776,110 - 29,788,502 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,673,231 - 29,677,642 (-)Ensembl
GRCm38.p6 Ensembl229,783,219 - 29,787,630 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113807   ⟹   ENSMUSP00000109438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,651,236 - 29,677,660 (-)Ensembl
GRCm38.p6 Ensembl229,761,224 - 29,787,648 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,669,223 - 29,672,208 (-)Ensembl
GRCm38.p6 Ensembl229,779,211 - 29,782,196 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156846   ⟹   ENSMUSP00000135464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,664,696 - 29,677,672 (-)Ensembl
GRCm38.p6 Ensembl229,774,684 - 29,787,660 (-)Ensembl
RefSeq Acc Id: ENSMUST00000175644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,674,932 - 29,677,645 (-)Ensembl
GRCm38.p6 Ensembl229,784,920 - 29,787,633 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,668,765 - 29,672,354 (-)Ensembl
GRCm38.p6 Ensembl229,778,753 - 29,782,342 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176312   ⟹   ENSMUSP00000134787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,667,700 - 29,677,646 (-)Ensembl
GRCm38.p6 Ensembl229,777,688 - 29,787,634 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177133   ⟹   ENSMUSP00000135893
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,668,606 - 29,677,683 (-)Ensembl
GRCm38.p6 Ensembl229,778,594 - 29,787,671 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177467   ⟹   ENSMUSP00000135521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl229,667,769 - 29,677,634 (-)Ensembl
GRCm38.p6 Ensembl229,777,757 - 29,787,622 (-)Ensembl
RefSeq Acc Id: NM_001290495   ⟹   NP_001277424
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,664,696 - 29,677,683 (-)NCBI
GRCm38229,774,684 - 29,787,671 (-)NCBI
Celera229,481,759 - 29,494,746 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001290496   ⟹   NP_001277425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,664,696 - 29,677,683 (-)NCBI
GRCm38229,774,684 - 29,787,671 (-)NCBI
Celera229,481,759 - 29,494,746 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145520   ⟹   NP_663495
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,664,696 - 29,677,683 (-)NCBI
GRCm38229,774,684 - 29,787,671 (-)NCBI
MGSCv37229,631,631 - 29,643,191 (-)RGD
Celera229,481,759 - 29,494,746 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_110962
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,664,696 - 29,677,683 (-)NCBI
GRCm38229,774,684 - 29,787,671 (-)NCBI
Celera229,481,759 - 29,494,746 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497924   ⟹   XP_006497987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,666,122 - 29,677,697 (-)NCBI
GRCm38229,776,110 - 29,787,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497925   ⟹   XP_006497988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39229,651,235 - 29,677,697 (-)NCBI
GRCm38229,761,223 - 29,787,671 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_663495   ⟸   NM_145520
- Peptide Label: isoform a
- UniProtKB: Q8BTK3 (UniProtKB/Swiss-Prot),   Q91WG3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497988   ⟸   XM_006497925
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006497987   ⟸   XM_006497924
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001277424   ⟸   NM_001290495
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: NP_001277425   ⟸   NM_001290496
- Peptide Label: isoform c
- UniProtKB: H3BKT7 (UniProtKB/TrEMBL),   A2ARC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000135893   ⟸   ENSMUST00000177133
RefSeq Acc Id: ENSMUSP00000135521   ⟸   ENSMUST00000177467
RefSeq Acc Id: ENSMUSP00000109438   ⟸   ENSMUST00000113807
RefSeq Acc Id: ENSMUSP00000041848   ⟸   ENSMUST00000048044
RefSeq Acc Id: ENSMUSP00000135464   ⟸   ENSMUST00000156846
RefSeq Acc Id: ENSMUSP00000134787   ⟸   ENSMUST00000176312
Protein Domains
Pseudouridine synthase II N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WG3-F1-model_v2 AlphaFold Q91WG3 1-331 view protein structure

Promoters
RGD ID:6832995
Promoter ID:MM_KWN:28456
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000113803,   OTTMUST00000030251,   UC008IZY.1,   UC008JAB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36229,643,504 - 29,644,004 (-)MPROMDB
RGD ID:6876848
Promoter ID:EPDNEW_M1869
Type:multiple initiation site
Name:Trub2_1
Description:Mus musculus TruB pseudouridine synthase family member 2 , transcriptvariant 4, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38229,787,652 - 29,787,712EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442186 AgrOrtholog
Ensembl Genes ENSMUSG00000039826 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048044 ENTREZGENE
  ENSMUST00000048044.12 UniProtKB/Swiss-Prot
  ENSMUST00000113807.10 UniProtKB/TrEMBL
  ENSMUST00000156846 ENTREZGENE
  ENSMUST00000156846.8 UniProtKB/TrEMBL
  ENSMUST00000176312.8 UniProtKB/TrEMBL
  ENSMUST00000177133.8 UniProtKB/TrEMBL
  ENSMUST00000177467 ENTREZGENE
  ENSMUST00000177467.8 UniProtKB/TrEMBL
Gene3D-CATH Pseudouridine synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PsdUridine_synth_cat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PsdUridine_synth_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227682 UniProtKB/Swiss-Prot
MGD MGI:2442186 ENTREZGENE
NCBI Gene 227682 ENTREZGENE
PANTHER MITOCHONDRIAL MRNA PSEUDOURIDINE SYNTHASE TRUB2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TruB_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trub2 PhenoGen
Superfamily-SCOP SSF55120 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2ARC1 ENTREZGENE, UniProtKB/TrEMBL
  H3BKT7 ENTREZGENE, UniProtKB/TrEMBL
  H3BLS1_MOUSE UniProtKB/TrEMBL
  Q8BTK3 ENTREZGENE
  Q91WG3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BTK3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Trub2  TruB pseudouridine (psi) synthase family member 2    TruB pseudouridine (psi) synthase homolog 2 (E. coli)  Symbol and/or name change 5135510 APPROVED