Acer1 (alkaline ceramidase 1) - Rat Genome Database

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Gene: Acer1 (alkaline ceramidase 1) Mus musculus
Analyze
Symbol: Acer1
Name: alkaline ceramidase 1
RGD ID: 1557915
MGI Page MGI
Description: Enables N-acylsphingosine amidohydrolase activity. Involved in sebaceous gland development and sphingosine biosynthetic process. Acts upstream of or within ceramide catabolic process and regulation of lipid metabolic process. Located in endoplasmic reticulum. Orthologous to human ACER1 (alkaline ceramidase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310024P18Rik; acylsphingosine deacylase 3; AI662009; alkaline cdase 1; alkCDase 1; Alkcdase1; As; Asah3; Cer; Cer1; maCER1; N-acylsphingosine amidohydrolase 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,260,490 - 57,289,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,260,490 - 57,289,126 (-)EnsemblGRCm39 Ensembl
GRCm381756,953,490 - 56,982,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,953,490 - 56,982,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,092,913 - 57,121,549 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,638,614 - 56,667,250 (-)NCBIMGSCv36mm8
Celera1761,301,415 - 61,330,050 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endoplasmic reticulum  (IBA,IDA,ISO)
membrane  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal awl hair morphology  (IAGP)
abnormal ceramide level  (IAGP)
abnormal coat/ hair morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal epidermis stratum corneum morphology  (IAGP)
abnormal epidermis stratum granulosum morphology  (IAGP)
abnormal hair cuticle  (IAGP)
abnormal hair cycle  (IAGP)
abnormal hair cycle anagen phase  (IAGP)
abnormal hair cycle telogen phase  (IAGP)
abnormal hair follicle bulge morphology  (IAGP)
abnormal hair follicle development  (IAGP)
abnormal hair follicle infundibulum morphology  (IAGP)
abnormal hair follicle morphology  (IAGP)
abnormal hair follicle physiology  (IAGP)
abnormal hair growth  (IAGP)
abnormal hair shaft morphology  (IAGP)
abnormal keratohyalin granule morphology  (IAGP)
abnormal lipid level  (IAGP)
abnormal piliary canal morphology  (IAGP)
abnormal retina morphology  (IEA)
abnormal sebaceous lipid secretion  (IAGP)
abnormal sebocyte morphology  (IAGP)
abnormal skin development  (IAGP)
abnormal skin physiology  (IAGP)
abnormal skin sebaceous gland morphology  (IAGP)
abnormal sphingomyelin level  (IAGP)
abnormal zigzag hair morphology  (IAGP)
alopecia  (IAGP)
decreased body weight  (IAGP)
decreased brown adipose tissue mass  (IAGP)
decreased brown fat cell lipid droplet size  (IAGP)
decreased epididymal fat pad weight  (IAGP)
decreased inguinal fat pad weight  (IAGP)
decreased sphingosine level  (IAGP)
delayed skin barrier formation  (IAGP)
dilated hair follicle infundibulum  (IAGP)
dry skin  (IAGP)
enlarged sebaceous gland  (IAGP)
epidermal hyperplasia  (IAGP)
hyperactivity  (IAGP)
hyperkeratosis  (IAGP)
impaired skin barrier function  (IAGP)
increased apoptosis  (IAGP)
increased basal metabolism  (IAGP)
increased energy expenditure  (IAGP)
increased eosinophil cell number  (IAGP)
increased epididymal fat pad weight  (IAGP)
increased food intake  (IAGP)
increased keratinocyte proliferation  (IAGP)
scaly skin  (IAGP)
sebaceous gland hypertrophy  (IAGP)
skin inflammation  (IAGP)
thick dermal layer  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12783875   PMID:14681479   PMID:16141072   PMID:16141073   PMID:21205794   PMID:21267068   PMID:21677750   PMID:21873635  
PMID:23096701   PMID:27126290   PMID:29056331   PMID:29395079   PMID:30973865  


Genomics

Comparative Map Data
Acer1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,260,490 - 57,289,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,260,490 - 57,289,126 (-)EnsemblGRCm39 Ensembl
GRCm381756,953,490 - 56,982,126 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,953,490 - 56,982,126 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,092,913 - 57,121,549 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,638,614 - 56,667,250 (-)NCBIMGSCv36mm8
Celera1761,301,415 - 61,330,050 (-)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.59NCBI
ACER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,306,142 - 6,360,368 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,306,142 - 6,333,612 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,306,153 - 6,333,623 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,257,725 - 6,284,562 (-)NCBINCBI36Build 36hg18NCBI36
Build 34196,257,724 - 6,284,562NCBI
Celera196,245,303 - 6,272,430 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,065,539 - 6,093,294 (-)NCBIHuRef
CHM1_1196,306,127 - 6,333,277 (-)NCBICHM1_1
T2T-CHM13v2.0196,294,362 - 6,349,269 (-)NCBIT2T-CHM13v2.0
Acer1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,881,361 - 1,911,439 (-)NCBIGRCr8
mRatBN7.291,794,340 - 1,824,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,793,139 - 1,824,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,228,390 - 2,258,319 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,577,751 - 7,607,677 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,533,609 - 6,563,538 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,061,978 - 10,093,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,061,978 - 10,093,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,062,245 - 9,093,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,692,746 - 6,724,451 (+)NCBICelera
Cytogenetic Map9q11NCBI
Acer1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,247,083 - 3,271,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,247,170 - 3,271,417 (+)NCBIChiLan1.0ChiLan1.0
ACER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,706,922 - 10,738,430 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,932,811 - 9,964,360 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,327,251 - 5,393,587 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,252,300 - 6,281,016 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,252,300 - 6,281,016 (-)Ensemblpanpan1.1panPan2
ACER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,819,224 - 53,838,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,819,074 - 53,838,438 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,566,184 - 53,584,788 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,473,745 - 54,491,643 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,473,658 - 54,491,842 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,540,193 - 53,558,067 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,988,319 - 54,007,142 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,218,116 - 54,237,024 (+)NCBIUU_Cfam_GSD_1.0
Acer1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,128,914 - 214,148,773 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,688,244 - 3,705,831 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,688,244 - 3,705,831 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACER1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,743,643 - 72,769,570 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,704,603 - 72,767,474 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,283,294 - 73,331,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,949,286 - 5,978,282 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660812,050,460 - 2,092,860 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acer1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,041,875 - 4,045,675 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,022,288 - 4,046,235 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Acer1
903 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:599
Count of miRNA genes:417
Interacting mature miRNAs:464
Transcripts:ENSMUST00000056113
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5173897957534623Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse

Markers in Region
D17Mit158.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381756,976,288 - 56,976,399UniSTSGRCm38
MGSCv371757,115,711 - 57,115,822UniSTSGRCm37
Celera1761,324,211 - 61,324,322UniSTS
Cytogenetic Map17DUniSTS
cM Map1734.3UniSTS
cM Map17 UniSTS
Whitehead_YAC17 UniSTS
D17Mit158.3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381756,976,472 - 56,976,631UniSTSGRCm38
MGSCv371757,115,895 - 57,116,054UniSTSGRCm37
Celera1761,324,395 - 61,324,554UniSTS
Cytogenetic Map17DUniSTS
cM Map1734.3UniSTS
cM Map17 UniSTS
Whitehead_YAC17 UniSTS
D17Mit158  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381756,976,380 - 56,976,491UniSTSGRCm38
MGSCv371757,115,803 - 57,115,914UniSTSGRCm37
Celera1761,324,303 - 61,324,414UniSTS
Cytogenetic Map17DUniSTS
cM Map1734.3UniSTS
Whitehead Genetic1729.5UniSTS
Whitehead/MRC_RH17704.89UniSTS
AI662009  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381756,954,439 - 56,954,541UniSTSGRCm38
MGSCv371757,093,862 - 57,093,964UniSTSGRCm37
Celera1761,302,364 - 61,302,466UniSTS
Cytogenetic Map17DUniSTS
Whitehead/MRC_RH17704.99UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000056113   ⟹   ENSMUSP00000062037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1757,260,490 - 57,289,126 (-)Ensembl
GRCm38.p6 Ensembl1756,953,490 - 56,982,126 (-)Ensembl
RefSeq Acc Id: NM_175731   ⟹   NP_783858
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391757,260,490 - 57,289,126 (-)NCBI
GRCm381756,953,490 - 56,982,126 (-)ENTREZGENE
MGSCv371757,092,913 - 57,121,549 (-)RGD
Celera1761,301,415 - 61,330,050 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_783858 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI30255 (Get FASTA)   NCBI Sequence Viewer  
  AAL83821 (Get FASTA)   NCBI Sequence Viewer  
  BAC26186 (Get FASTA)   NCBI Sequence Viewer  
  BAC36029 (Get FASTA)   NCBI Sequence Viewer  
  EDL38214 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000062037
  ENSMUSP00000062037.5
GenBank Protein Q8R4X1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_783858   ⟸   NM_175731
- UniProtKB: A1L3S2 (UniProtKB/Swiss-Prot),   Q8R4X1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000062037   ⟸   ENSMUST00000056113

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R4X1-F1-model_v2 AlphaFold Q8R4X1 1-273 view protein structure

Promoters
RGD ID:13676554
Promoter ID:EPDNEW_M22426
Type:initiation region
Name:Acer1_1
Description:Mus musculus alkaline ceramidase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381756,982,155 - 56,982,215EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2181962 AgrOrtholog
Ensembl Genes ENSMUSG00000045019 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000056113 ENTREZGENE
  ENSMUST00000056113.5 UniProtKB/Swiss-Prot
InterPro ACER UniProtKB/Swiss-Prot
KEGG Report mmu:171168 UniProtKB/Swiss-Prot
MGD MGI:2181962 ENTREZGENE
NCBI Gene 171168 ENTREZGENE
PANTHER ALKALINE CERAMIDASE 1 UniProtKB/Swiss-Prot
  PTHR46139 UniProtKB/Swiss-Prot
Pfam Ceramidase UniProtKB/Swiss-Prot
PhenoGen Acer1 PhenoGen
UniProt A1L3S2 ENTREZGENE
  ACER1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A1L3S2 UniProtKB/Swiss-Prot