Slc25a41 (solute carrier family 25, member 41) - Rat Genome Database

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Gene: Slc25a41 (solute carrier family 25, member 41) Mus musculus
Analyze
Symbol: Slc25a41
Name: solute carrier family 25, member 41
RGD ID: 1557853
MGI Page MGI
Description: Enables ADP transmembrane transporter activity and ATP transmembrane transporter activity. Involved in mitochondrial ADP transmembrane transport and mitochondrial ATP transmembrane transport. Located in mitochondrion. Orthologous to human SLC25A41 (solute carrier family 25 member 41).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933406J04Rik; AI507137; calcium-independent mitochondrial carrier protein SCaMC-3L; mitochondrial ATP-Mg/Pi carrier protein; mitochondrial ATP-Mg/Pi carrier protein SLC25A41; SCaMC-3-like; SCaMC-3L; small calcium-binding mitochondrial carrier protein 3-like; solute carrier family 25 member 41
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,339,772 - 57,348,654 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,339,773 - 57,348,654 (-)EnsemblGRCm39 Ensembl
GRCm381757,032,772 - 57,041,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,032,773 - 57,041,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,172,195 - 57,181,077 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,717,902 - 56,724,338 (-)NCBIMGSCv36mm8
Celera1761,380,698 - 61,389,589 (-)NCBICelera
Cytogenetic Map17DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16949250   PMID:18614015   PMID:18799693   PMID:18928449  
PMID:21873635   PMID:24952082   PMID:34290169  


Genomics

Comparative Map Data
Slc25a41
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,339,772 - 57,348,654 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,339,773 - 57,348,654 (-)EnsemblGRCm39 Ensembl
GRCm381757,032,772 - 57,041,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1757,032,773 - 57,041,654 (-)EnsemblGRCm38mm10GRCm38
MGSCv371757,172,195 - 57,181,077 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,717,902 - 56,724,338 (-)NCBIMGSCv36mm8
Celera1761,380,698 - 61,389,589 (-)NCBICelera
Cytogenetic Map17DNCBI
SLC25A41
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,426,037 - 6,436,267 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl196,426,037 - 6,433,779 (-)EnsemblGRCh38hg38GRCh38
GRCh37196,426,048 - 6,433,774 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,377,048 - 6,384,790 (-)NCBINCBI36Build 36hg18NCBI36
Celera196,364,835 - 6,373,632 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,186,854 - 6,194,662 (-)NCBIHuRef
CHM1_1196,425,653 - 6,433,369 (-)NCBICHM1_1
T2T-CHM13v2.0196,414,920 - 6,423,279 (-)NCBIT2T-CHM13v2.0
Slc25a41
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.291,873,692 - 1,881,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,873,692 - 1,881,424 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,307,560 - 2,315,267 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.097,656,919 - 7,664,624 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.096,612,779 - 6,620,485 (-)NCBIRnor_WKY
Rnor_6.0910,004,811 - 10,012,539 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,004,805 - 10,012,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,005,494 - 9,013,189 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,636,042 - 6,643,741 (+)NCBICelera
Cytogenetic Map9q12NCBI
Slc25a41
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,175,892 - 3,183,229 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,175,892 - 3,182,637 (+)NCBIChiLan1.0ChiLan1.0
SLC25A41
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1196,371,338 - 6,382,413 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,371,338 - 6,382,413 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0195,446,931 - 5,449,135 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC25A41
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,737,302 - 53,744,248 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,738,125 - 53,744,262 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,483,887 - 53,491,261 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,391,034 - 54,398,394 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,392,297 - 54,398,408 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,457,666 - 53,465,043 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,906,086 - 53,913,457 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,135,303 - 54,142,672 (+)NCBIUU_Cfam_GSD_1.0
Slc25a41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,048,321 - 214,057,680 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365883,777,113 - 3,786,643 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A41
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,647,470 - 72,655,473 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,645,505 - 72,655,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,066,422 - 73,069,673 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A41
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.166,031,015 - 6,038,496 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl66,031,366 - 6,038,187 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660811,963,206 - 1,970,696 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:262
Count of miRNA genes:202
Interacting mature miRNAs:213
Transcripts:ENSMUST00000058661, ENSMUST00000169012
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
1300592Pcyts5_mplasmacytoma susceptibility 5 (mouse)Not determined173871288772712970Mouse
10755525Lymph2_mlymphocyte differential 2 (mouse)173880562672805626Mouse
10755534Lymph4_mlymphocyte differential 4 (mouse)173880562672805626Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse
26884390Skwq9_mskull length QTL 9, 10 week (mouse)174371089167806995Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
14700692Cihvtq1_mcoxsackieviral infection heart viral titre QTL 1 (mouse)175000702870006995Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4142243Lfnq5_mlung function QTL 5 (mouse)Not determined5173897957534623Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse

Markers in Region
UniSTS:237675  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381757,032,804 - 57,033,039UniSTSGRCm38
MGSCv371757,172,227 - 57,172,462UniSTSGRCm37
Celera1761,380,730 - 61,380,965UniSTS
Cytogenetic Map17DUniSTS
cM Map1736.0UniSTS
AI507137  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381757,032,808 - 57,032,891UniSTSGRCm38
MGSCv371757,172,231 - 57,172,314UniSTSGRCm37
Celera1761,380,734 - 61,380,817UniSTS
Cytogenetic Map17DUniSTS
cM Map1736.0UniSTS
Slc25a41  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17DUniSTS
cM Map1729.63UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000058661   ⟹   ENSMUSP00000058877
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1757,339,773 - 57,348,654 (-)Ensembl
GRCm38.p6 Ensembl1757,032,773 - 57,041,654 (-)Ensembl
RefSeq Acc Id: ENSMUST00000169012   ⟹   ENSMUSP00000130857
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1757,339,925 - 57,348,647 (-)Ensembl
GRCm38.p6 Ensembl1757,032,925 - 57,041,647 (-)Ensembl
RefSeq Acc Id: NM_001346527   ⟹   NP_001333456
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391757,339,773 - 57,348,654 (-)NCBI
GRCm381757,032,773 - 57,041,654 (-)NCBI
Sequence:
RefSeq Acc Id: NM_175333   ⟹   NP_780542
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391757,339,772 - 57,348,654 (-)NCBI
GRCm381757,032,772 - 57,041,654 (-)NCBI
MGSCv371757,172,195 - 57,181,077 (-)RGD
Celera1761,380,698 - 61,389,589 (-)RGD
cM Map17 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_780542   ⟸   NM_175333
- Peptide Label: isoform 1
- UniProtKB: Q14BV4 (UniProtKB/Swiss-Prot),   Q8BVN7 (UniProtKB/Swiss-Prot),   B8ZHC8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333456   ⟸   NM_001346527
- Peptide Label: isoform 2
- UniProtKB: Q8BVN7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000130857   ⟸   ENSMUST00000169012
RefSeq Acc Id: ENSMUSP00000058877   ⟸   ENSMUST00000058661

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BVN7-F1-model_v2 AlphaFold Q8BVN7 1-312 view protein structure

Promoters
RGD ID:13676564
Promoter ID:EPDNEW_M22431
Type:single initiation site
Name:Slc25a41_1
Description:Mus musculus solute carrier family 25, member 41 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381757,041,660 - 57,041,720EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144215 AgrOrtholog
Ensembl Genes ENSMUSG00000011486 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000058877 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000130857 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000058661 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000169012 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot
InterPro Mit_carrier UniProtKB/Swiss-Prot
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:103775 UniProtKB/Swiss-Prot
MGD MGI:2144215 ENTREZGENE
NCBI Gene 103775 ENTREZGENE
Pfam Mito_carr UniProtKB/Swiss-Prot
PhenoGen Slc25a41 PhenoGen
PRINTS MITOCARRIER UniProtKB/Swiss-Prot
PROSITE SOLCAR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot
UniProt B8ZHC8 ENTREZGENE
  Q14BV4 ENTREZGENE
  Q8BVN7 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B8ZHC8 UniProtKB/Swiss-Prot
  Q14BV4 UniProtKB/Swiss-Prot