Msr1 (macrophage scavenger receptor 1) - Rat Genome Database
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Gene: Msr1 (macrophage scavenger receptor 1) Mus musculus
Analyze
Symbol: Msr1
Name: macrophage scavenger receptor 1
RGD ID: 1557852
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; limb; neural tube; reproductive system; and yolk sac. Human ortholog(s) of this gene implicated in Barrett's esophagus; arteriosclerosis; and prostate cancer. Orthologous to human MSR1 (macrophage scavenger receptor 1); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: macrophage acetylated LDL receptor I and II; macrophage scavenger receptor types I and II; MR; MRS-A; MS; MSR; MSR-A; S; Sc; Scara1; scavenger receptor type A; Scvr; SR-A; SR-AI; SR-AII
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39839,996,284 - 40,095,790 (-)NCBIGRCm39mm39
GRCm39 Ensembl840,034,726 - 40,095,714 (-)Ensembl
GRCm38839,543,232 - 39,642,750 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl839,581,685 - 39,642,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv37840,667,054 - 40,728,032 (-)NCBIGRCm37mm9NCBIm37
MGSCv36841,102,269 - 41,141,495 (-)NCBImm8
Celera842,254,529 - 42,315,500 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-lipoic acid  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (EXP,ISO)
acetamide  (ISO)
acrylamide  (EXP)
antirheumatic drug  (ISO)
apocynin  (ISO)
arsenous acid  (ISO)
atorvastatin calcium  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bisdemethoxycurcumin  (ISO)
bisphenol A  (ISO)
bisphenol F  (EXP)
Calcimycin  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
cholesterol  (ISO)
choline  (EXP)
chrysene  (EXP)
curcumin  (ISO)
cycloheximide  (ISO)
demethoxycurcumin  (ISO)
desferrioxamine B  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dioxygen  (EXP,ISO)
disodium selenite  (EXP)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furosemide  (ISO)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
hydroxyl  (ISO)
irinotecan  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lipoic acid  (ISO)
lipopolysaccharide  (EXP,ISO)
mercury atom  (EXP)
mercury dichloride  (EXP)
mercury(0)  (EXP)
methyl methanesulfonate  (ISO)
miquelianin  (EXP)
Monobutylphthalate  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
phorbol 13-acetate 12-myristate  (EXP,ISO)
procyanidin B3  (EXP)
quartz  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium benzoate  (ISO)
tamibarotene  (EXP,ISO)
Tanshinone I  (EXP)
TEMPO  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
titanium dioxide  (EXP)
tremolite asbestos  (EXP)
trichostatin A  (EXP)
valproic acid  (ISO)
zinc oxide  (ISO)

References

Additional References at PubMed
PMID:1978939   PMID:7666008   PMID:7671815   PMID:7867067   PMID:7875210   PMID:8119883   PMID:8332192   PMID:8380589   PMID:8394868   PMID:8530024   PMID:8668199   PMID:8761296  
PMID:9066908   PMID:9188474   PMID:9218499   PMID:9348300   PMID:9392418   PMID:9398835   PMID:9512458   PMID:9588184   PMID:10064066   PMID:10079248   PMID:10224290   PMID:10227703  
PMID:10349636   PMID:10407492   PMID:10550330   PMID:10559520   PMID:10620613   PMID:10706889   PMID:10779795   PMID:10925161   PMID:10967138   PMID:11004705   PMID:11013298   PMID:11016456  
PMID:11031085   PMID:11042159   PMID:11062078   PMID:11076861   PMID:11141491   PMID:11217851   PMID:11240025   PMID:11412310   PMID:11686309   PMID:12014582   PMID:12058253   PMID:12101265  
PMID:12228258   PMID:12376530   PMID:12477932   PMID:12488451   PMID:12543251   PMID:12819208   PMID:12823473   PMID:15006698   PMID:15145948   PMID:15234963   PMID:15316030   PMID:15489334  
PMID:15528383   PMID:15556945   PMID:15580571   PMID:15755524   PMID:15849212   PMID:16037291   PMID:16040605   PMID:16075060   PMID:16116224   PMID:16141072   PMID:16141073   PMID:16203857  
PMID:16339540   PMID:16339556   PMID:16374778   PMID:16517114   PMID:16517746   PMID:16525990   PMID:16552714   PMID:16675784   PMID:16837728   PMID:16882874   PMID:16902192   PMID:16914051  
PMID:16926412   PMID:16950138   PMID:16984918   PMID:17015738   PMID:17148552   PMID:17154265   PMID:17166840   PMID:17167049   PMID:17192284   PMID:17237231   PMID:17259380   PMID:17332894  
PMID:17370294   PMID:17442975   PMID:17510431   PMID:17548480   PMID:17551591   PMID:17615582   PMID:17761940   PMID:17873277   PMID:17893199   PMID:18065445   PMID:18180331   PMID:18279586  
PMID:18489571   PMID:18511575   PMID:18566345   PMID:18615637   PMID:18839541   PMID:18924218   PMID:18948635   PMID:19112093   PMID:19117124   PMID:19214213   PMID:19349620   PMID:19383244  
PMID:19473344   PMID:19521507   PMID:19546885   PMID:19641936   PMID:19667044   PMID:19694752   PMID:19774489   PMID:19790077   PMID:19834009   PMID:19864011   PMID:19880493   PMID:19952357  
PMID:20036645   PMID:20162551   PMID:20206177   PMID:20338659   PMID:20424635   PMID:20488784   PMID:20634212   PMID:20711846   PMID:20810988   PMID:21035758   PMID:21098741   PMID:21123169  
PMID:21205827   PMID:21308776   PMID:21422184   PMID:21460221   PMID:21596859   PMID:21675859   PMID:21677750   PMID:21756882   PMID:21769674   PMID:21832164   PMID:21872574   PMID:21873635  
PMID:21914786   PMID:22079429   PMID:22083206   PMID:22088322   PMID:22215667   PMID:22282357   PMID:22377830   PMID:22438044   PMID:22470565   PMID:22627090   PMID:22652221   PMID:22676725  
PMID:22751446   PMID:22753077   PMID:22821642   PMID:22841663   PMID:23064364   PMID:23071440   PMID:23108486   PMID:23123599   PMID:23333385   PMID:23447685   PMID:23630358   PMID:23669238  
PMID:23703615   PMID:23706521   PMID:23733871   PMID:23794629   PMID:23799536   PMID:23927892   PMID:23933982   PMID:23939398   PMID:23997238   PMID:24035364   PMID:24114771   PMID:24170693  
PMID:24257313   PMID:24491035   PMID:24498223   PMID:24554775   PMID:24563502   PMID:24718459   PMID:24875449   PMID:25070949   PMID:25131634   PMID:25343451   PMID:25352436   PMID:25744064  
PMID:26363049   PMID:26363227   PMID:26608330   PMID:26616876   PMID:26934296   PMID:27299860   PMID:27428900   PMID:27587397   PMID:27601677   PMID:27826145   PMID:28193223   PMID:28202524  
PMID:28213380   PMID:28338748   PMID:28394332   PMID:28705936   PMID:28791414   PMID:28828577   PMID:28935758   PMID:28970238   PMID:29032172   PMID:29154963   PMID:29246456   PMID:29326120  
PMID:29651042   PMID:30485705   PMID:31155588   PMID:31369218   PMID:31386800   PMID:31972266   PMID:32066456   PMID:32259484   PMID:32312978  


Genomics

Comparative Map Data
Msr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39839,996,284 - 40,095,790 (-)NCBIGRCm39mm39
GRCm39 Ensembl840,034,726 - 40,095,714 (-)Ensembl
GRCm38839,543,232 - 39,642,750 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl839,581,685 - 39,642,673 (-)EnsemblGRCm38mm10GRCm38
MGSCv37840,667,054 - 40,728,032 (-)NCBIGRCm37mm9NCBIm37
MGSCv36841,102,269 - 41,141,495 (-)NCBImm8
Celera842,254,529 - 42,315,500 (-)NCBICelera
Cytogenetic Map8A4NCBI
cM Map823.89NCBI
MSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl816,107,878 - 16,567,490 (-)EnsemblGRCh38hg38GRCh38
GRCh38816,107,881 - 16,192,651 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37815,965,390 - 16,050,160 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36816,009,758 - 16,094,671 (-)NCBINCBI36hg18NCBI36
Build 34816,009,760 - 16,094,595NCBI
Celera814,929,936 - 15,014,828 (-)NCBI
Cytogenetic Map8p22NCBI
HuRef814,509,923 - 14,594,638 (-)NCBIHuRef
CHM1_1816,167,312 - 16,251,899 (-)NCBICHM1_1
Msr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21652,717,775 - 52,802,890 (+)NCBI
Rnor_6.0 Ensembl1656,813,791 - 56,900,052 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01656,817,714 - 56,900,025 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01656,516,982 - 56,597,180 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41656,278,223 - 56,345,472 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1650,621,592 - 50,686,791 (+)NCBICelera
Cytogenetic Map16q12.1NCBI
Msr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554631,197,022 - 1,264,765 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554631,197,086 - 1,263,943 (+)NCBIChiLan1.0ChiLan1.0
MSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1812,091,543 - 12,175,927 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl812,088,873 - 12,175,927 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0815,335,795 - 15,421,472 (-)NCBIMhudiblu_PPA_v0panPan3
MSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1639,436,753 - 39,527,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11639,434,948 - 39,513,727 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Msr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365735,345,282 - 5,391,946 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MSR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl173,857,171 - 3,939,726 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1173,859,903 - 3,939,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2174,110,409 - 4,191,629 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MSR1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1814,221,389 - 14,305,059 (-)NCBI
ChlSab1.1 Ensembl814,220,529 - 14,304,946 (-)Ensembl
Msr1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624839694,149 - 769,322 (+)NCBI

Position Markers
Msr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8A4UniSTS
cM Map820.0UniSTS
L04275  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38839,605,636 - 39,605,781UniSTSGRCm38
MGSCv37840,690,990 - 40,691,135UniSTSGRCm37
Celera842,278,258 - 42,278,403UniSTS
Cytogenetic Map8A4UniSTS
cM Map820.0UniSTS
Whitehead/MRC_RH8497.68UniSTS
Msr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8A4UniSTS
cM Map820.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300906Ap8q_malcohol preference 8 QTL (mouse)Not determined8749417341494326Mouse
1301128Sluc20_msusceptibility to lung cancer 20 (mouse)Not determined8761318541613356Mouse
1301929Eae24_msusceptibility to experimental allergic encephalomyelitis 24 (mouse)Not determined8761318541613356Mouse
10412209Cypr7_mcytokine production 7 (mouse)Not determined8761318541613356Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
1301088Alcw6_malcohol withdrawal 6 (mouse)Not determined81501654449016701Mouse
1300912Daq19_mdirectional asymmetry QTL 19 (mouse)Not determined81501654449016701Mouse
1301298Pgia4_mproteoglycan induced arthritis 4 (mouse)Not determined81607934550079669Mouse
1301550Fembrs2_mfemur breaking strength 2 (mouse)Not determined81785394351854071Mouse
1301160Eae14_msusceptibility to experimental allergic encephalomyelitis 14 (mouse)Not determined81898786452987996Mouse
1300603Cd8ts2_mCD8 T cell subset 2 (mouse)Not determined81898786452987996Mouse
10043974Obq30_mobesity QTL 30 (mouse)Not determined82613028560130285Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
10043990Hbnr12_mHeligmosomoides bakeri nematode resistance 12 (mouse)Not determined83278698850837502Mouse
1301936Trigq2_mtriglyceride QTL 2 (mouse)Not determined83383736267837502Mouse
1301196Mnif1_mmacronutrient intake (mouse)Not determined83464277644852835Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301139Lmr10_mleishmaniasis resistance 10 (mouse)Not determined83485394357344598Mouse
11041902Lmr10a_mleishmaniasis resistance 10a (mouse)83485394357344598Mouse
11049577Lmr10b_mleishmaniasis resistance 10b (mouse)83485394357344598Mouse
11049578Lmr10c_mleishmaniasis resistance 10c (mouse)83485394357344598Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:719
Count of miRNA genes:472
Interacting mature miRNAs:531
Transcripts:ENSMUST00000026021, ENSMUST00000170091
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC127326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF203781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D13382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM571689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L04274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L04275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M59445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M59446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U13873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000026021   ⟹   ENSMUSP00000026021
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl839,581,685 - 39,642,620 (-)Ensembl
RefSeq Acc Id: ENSMUST00000170091   ⟹   ENSMUSP00000132535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl839,603,454 - 39,642,673 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210525   ⟹   ENSMUSP00000147644
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl839,615,814 - 39,642,671 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210589
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl839,630,324 - 39,642,653 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl839,624,254 - 39,642,671 (-)Ensembl
RefSeq Acc Id: NM_001113326   ⟹   NP_001106797
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39840,034,741 - 40,095,719 (-)NCBI
GRCm38839,581,700 - 39,642,678 (-)NCBI
MGSCv37840,667,054 - 40,728,032 (-)RGD
Celera842,254,529 - 42,315,500 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_031195   ⟹   NP_112472
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39840,056,493 - 40,095,719 (-)NCBI
GRCm38839,603,452 - 39,642,678 (-)NCBI
MGSCv37840,667,054 - 40,728,032 (-)RGD
Celera842,254,529 - 42,315,500 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509311   ⟹   XP_006509374
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39839,996,284 - 40,095,790 (-)NCBI
GRCm38839,543,232 - 39,642,750 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509312   ⟹   XP_006509375
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39840,030,463 - 40,088,857 (-)NCBI
GRCm38839,577,422 - 39,635,818 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_112472   ⟸   NM_031195
- Peptide Label: isoform a
- UniProtKB: Q8CED7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001106797   ⟸   NM_001113326
- Peptide Label: isoform b
- UniProtKB: P30204 (UniProtKB/Swiss-Prot),   Q8CED7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509374   ⟸   XM_006509311
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006509375   ⟸   XM_006509312
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000132535   ⟸   ENSMUST00000170091
RefSeq Acc Id: ENSMUSP00000026021   ⟸   ENSMUST00000026021
RefSeq Acc Id: ENSMUSP00000147644   ⟸   ENSMUST00000210525
Protein Domains
Collagen-like   SRCR

Promoters
RGD ID:8666963
Promoter ID:EPDNEW_M11489
Type:initiation region
Name:Msr1_1
Description:Mus musculus macrophage scavenger receptor 1 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38839,642,671 - 39,642,731EPDNEW
RGD ID:6843494
Promoter ID:MM_KWN:54210
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:UC009LMJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36840,717,946 - 40,718,682 (-)MPROMDB
RGD ID:6843492
Promoter ID:MM_KWN:54211
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:ENSMUST00000026021,   ENSMUST00000110488
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36840,721,131 - 40,721,631 (-)MPROMDB
RGD ID:6843493
Promoter ID:MM_KWN:54212
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:NM_001113326,   NM_031195
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36840,727,881 - 40,728,397 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98257 AgrOrtholog
Ensembl Genes ENSMUSG00000025044 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000026021 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000132535 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000147644 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000026021 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000170091 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000210525 UniProtKB/TrEMBL
Gene3D-CATH 3.10.250.10 UniProtKB/Swiss-Prot
InterPro Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Macro_scav_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR UniProtKB/Swiss-Prot
  SRCR-like_dom UniProtKB/Swiss-Prot
  SRCR-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:20288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98257 ENTREZGENE
NCBI Gene 20288 ENTREZGENE
PANTHER PTHR19331:SF440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Macscav_rec UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRCR UniProtKB/Swiss-Prot
PhenoGen Msr1 PhenoGen
PRINTS MACSCAVRCPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERACTRCPTR UniProtKB/Swiss-Prot
PROSITE SRCR_1 UniProtKB/Swiss-Prot
  SRCR_2 UniProtKB/Swiss-Prot
SMART SM00202 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56487 UniProtKB/Swiss-Prot
UniProt A0A1B0GRS5_MOUSE UniProtKB/TrEMBL
  MSRE_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U2C3_MOUSE UniProtKB/TrEMBL
  Q3U3E5_MOUSE UniProtKB/TrEMBL
  Q8CED7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9QNQ5 UniProtKB/Swiss-Prot
  Q923G0 UniProtKB/Swiss-Prot
  Q9QZ56 UniProtKB/Swiss-Prot