Vmn1r15 (vomeronasal 1 receptor 15) - Rat Genome Database

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Gene: Vmn1r15 (vomeronasal 1 receptor 15) Mus musculus
Analyze
No known orthologs.
Symbol: Vmn1r15
Name: vomeronasal 1 receptor 15
RGD ID: 1557839
MGI Page MGI
Description: Predicted to enable signaling receptor activity. Predicted to act upstream of or within sensory perception of chemical stimulus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: V1r; V1rc6; vomernasal 1 receptor Vmn1r15; vomeronasal 1 receptor, C6; vomeronasal type 1 receptor C6
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39657,235,134 - 57,236,033 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl657,234,937 - 57,236,957 (+)EnsemblGRCm39 Ensembl
GRCm38657,258,149 - 57,259,048 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl657,257,952 - 57,259,972 (+)EnsemblGRCm38mm10GRCm38
MGSCv37657,208,143 - 57,209,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36657,187,727 - 57,188,626 (+)NCBIMGSCv36mm8
Celera658,019,895 - 58,020,794 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map627.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11116090   PMID:12477932   PMID:19952141   PMID:20003482   PMID:21267068   PMID:21873635  


Genomics

Variants

.
Variants in Vmn1r15
30 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:98
Interacting mature miRNAs:100
Transcripts:ENSMUST00000071304
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1301326Trbv4c2_mT cell receptor beta variable 4 (mouse)Not determined64086823071356155Mouse
12880424V25Dq4_mvitamin D inactive form serum level QTL 4 (mouse)64157698575576985Mouse
11040600Lmr4c_mleishmaniasis resistance 4c (mouse)64209335876093500Mouse
11040601Lmr4a_mleishmaniasis resistance 4a (mouse)64209335876093500Mouse
11533915Mts4_mmammary tumor susceptibility 4 (mouse)64209335876093500Mouse
1301266Lmr4_mleishmaniasis resistance 4 (mouse)Not determined64209335876093500Mouse
12910785Pwgrq16_mpost-weaning growth rate QTL 16 (mouse)64380374777788506Mouse
12910798Pwgrq5_mpre-weaning growth rate QTL 5 (mouse)64380374777788506Mouse
12910802Pwbwq12_mpost-weaning body weight QTL 12 (mouse)64380374777788506Mouse
12910807Pwbwq11_mpost-weaning body weight QTL 11 (mouse)64380374777788506Mouse
12910809Pwbwq10_mpost-weaning body weight QTL 10 (mouse)64380374777788506Mouse
12910820Ogrq3_moverall growth rate QTL 3 (mouse)64380374777788506Mouse
10043885Cia6c_mcollagen induced arthritis QTL 6c (mouse)Not determined64444280571096451Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
4140983Srilp_msleep response to influenza, light phase (mouse)Not determined4870349075424693Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse

Markers in Region
UniSTS:493142  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38657,258,149 - 57,259,048UniSTSGRCm38
MGSCv37657,208,143 - 57,209,042UniSTSGRCm37
Celera658,019,895 - 58,020,794UniSTS
Cytogenetic Map6B3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF782853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000228297   ⟹   ENSMUSP00000154252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl657,234,937 - 57,236,957 (+)Ensembl
GRCm38.p6 Ensembl657,257,952 - 57,259,972 (+)Ensembl
RefSeq Acc Id: NM_053236   ⟹   NP_444466
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39657,235,134 - 57,236,033 (+)NCBI
GRCm38657,258,149 - 57,259,048 (+)ENTREZGENE
MGSCv37657,208,143 - 57,209,042 (+)RGD
Celera658,019,895 - 58,020,794 (+)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_444466 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42096 (Get FASTA)   NCBI Sequence Viewer  
  AAI15502 (Get FASTA)   NCBI Sequence Viewer  
  AAI15503 (Get FASTA)   NCBI Sequence Viewer  
  AEE99973 (Get FASTA)   NCBI Sequence Viewer  
  AEE99974 (Get FASTA)   NCBI Sequence Viewer  
  AEE99975 (Get FASTA)   NCBI Sequence Viewer  
  AEE99976 (Get FASTA)   NCBI Sequence Viewer  
  AEE99977 (Get FASTA)   NCBI Sequence Viewer  
  AEE99978 (Get FASTA)   NCBI Sequence Viewer  
  AEE99979 (Get FASTA)   NCBI Sequence Viewer  
  AEE99980 (Get FASTA)   NCBI Sequence Viewer  
  AEE99981 (Get FASTA)   NCBI Sequence Viewer  
  AEE99982 (Get FASTA)   NCBI Sequence Viewer  
  AEE99983 (Get FASTA)   NCBI Sequence Viewer  
  AEE99984 (Get FASTA)   NCBI Sequence Viewer  
  AEE99985 (Get FASTA)   NCBI Sequence Viewer  
  AEE99986 (Get FASTA)   NCBI Sequence Viewer  
  AEE99987 (Get FASTA)   NCBI Sequence Viewer  
  AEE99988 (Get FASTA)   NCBI Sequence Viewer  
  AEE99989 (Get FASTA)   NCBI Sequence Viewer  
  AEE99990 (Get FASTA)   NCBI Sequence Viewer  
  AEE99991 (Get FASTA)   NCBI Sequence Viewer  
  AEE99992 (Get FASTA)   NCBI Sequence Viewer  
  AEE99993 (Get FASTA)   NCBI Sequence Viewer  
  AEE99994 (Get FASTA)   NCBI Sequence Viewer  
  AEE99995 (Get FASTA)   NCBI Sequence Viewer  
  AEE99996 (Get FASTA)   NCBI Sequence Viewer  
  EDL04734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000154252
  ENSMUSP00000154252.2
Reference Protein Sequences
RefSeq Acc Id: NP_444466   ⟸   NM_053236
- UniProtKB: Q14C10 (UniProtKB/TrEMBL),   F6MAN0 (UniProtKB/TrEMBL),   F6MAM1 (UniProtKB/TrEMBL),   F6MAM6 (UniProtKB/TrEMBL),   F6MAN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000154252   ⟸   ENSMUST00000228297
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q14C10-F1-model_v2 AlphaFold Q14C10 1-299 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2148527 AgrOrtholog
Ensembl Genes ENSMUSG00000115199 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000228297 ENTREZGENE
  ENSMUST00000228297.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Vmron_rcpt_1 UniProtKB/TrEMBL
KEGG Report mmu:113863 UniProtKB/TrEMBL
MGD MGI:2148527 ENTREZGENE
NCBI Gene 113863 ENTREZGENE
PANTHER PTHR24062 UniProtKB/TrEMBL
  VOMERONASAL TYPE-1 RECEPTOR UniProtKB/TrEMBL
Pfam V1R UniProtKB/TrEMBL
PhenoGen Vmn1r15 PhenoGen
PRINTS VOMERONASL1R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt F6MAM1 ENTREZGENE
  F6MAM6 ENTREZGENE
  F6MAN0 ENTREZGENE
  F6MAN4 ENTREZGENE
  Q14C10 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Vmn1r15  vomeronasal 1 receptor 15  V1rc6  vomeronasal 1 receptor, C6  Symbol and/or name change 5135510 APPROVED