Trnt1 (tRNA nucleotidyl transferase, CCA-adding, 1) - Rat Genome Database

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Gene: Trnt1 (tRNA nucleotidyl transferase, CCA-adding, 1) Mus musculus
Analyze
Symbol: Trnt1
Name: tRNA nucleotidyl transferase, CCA-adding, 1
RGD ID: 1557806
MGI Page MGI
Description: Predicted to have ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity; tRNA binding activity; and tRNA nucleotidyltransferase activity. Predicted to be involved in mitochondrial tRNA 3'-end processing and tRNA 3'-terminal CCA addition. Localizes to mitochondrion. Human ortholog(s) of this gene implicated in sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay. Orthologous to human TRNT1 (tRNA nucleotidyl transferase 1); INTERACTS WITH 1,2-dichloroethane; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2410043H24Rik; 2610044E04Rik; 9830143O18Rik; AA408384; C76540; CCA tRNA nucleotidyltransferase 1, mitochondrial; CGI-4; CGI-47; mitochondrial tRNA nucleotidyl transferase, CCA-adding; mt CCA-adding enzyme; mt tRNA adenylyltransferase; mt tRNA CCA-diphosphorylase; mt tRNA CCA-pyrophosphorylase; mt-Trat; tRNA adenylyltransferase, mitochondrial; tRNA-nucleotidyltransferase 1, mitochondrial
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396106,746,099 - 106,759,435 (+)NCBIGRCm39mm39
GRCm39 Ensembl6106,746,081 - 106,759,435 (+)Ensembl
GRCm386106,769,138 - 106,782,474 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6106,769,120 - 106,782,474 (+)EnsemblGRCm38mm10GRCm38
MGSCv376106,719,166 - 106,732,463 (+)NCBIGRCm37mm9NCBIm37
MGSCv366106,734,949 - 106,748,246 (+)NCBImm8
Celera6108,586,454 - 108,599,747 (+)NCBICelera
Cytogenetic Map6E1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (HDA,ISA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11504732   PMID:11544199   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:18614015   PMID:32968282  


Genomics

Comparative Map Data
Trnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396106,746,099 - 106,759,435 (+)NCBIGRCm39mm39
GRCm39 Ensembl6106,746,081 - 106,759,435 (+)Ensembl
GRCm386106,769,138 - 106,782,474 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6106,769,120 - 106,782,474 (+)EnsemblGRCm38mm10GRCm38
MGSCv376106,719,166 - 106,732,463 (+)NCBIGRCm37mm9NCBIm37
MGSCv366106,734,949 - 106,748,246 (+)NCBImm8
Celera6108,586,454 - 108,599,747 (+)NCBICelera
Cytogenetic Map6E1NCBI
TRNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl33,126,933 - 3,150,879 (+)EnsemblGRCh38hg38GRCh38
GRCh3833,126,937 - 3,153,435 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3733,168,624 - 3,195,119 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3633,143,600 - 3,165,707 (+)NCBINCBI36hg18NCBI36
Build 3433,143,635 - 3,165,704NCBI
Celera33,107,764 - 3,129,901 (+)NCBI
Cytogenetic Map3p26.2NCBI
HuRef33,102,588 - 3,124,725 (+)NCBIHuRef
CHM1_133,118,592 - 3,140,730 (+)NCBICHM1_1
Trnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24139,681,115 - 139,703,611 (+)NCBI
Rnor_6.0 Ensembl4138,855,641 - 138,869,217 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04138,855,497 - 138,869,217 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04203,326,023 - 203,339,605 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44142,124,815 - 142,138,391 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4128,402,461 - 128,415,956 (+)NCBICelera
Cytogenetic Map4q41NCBI
Trnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542110,189,469 - 10,211,434 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542110,192,065 - 10,211,527 (-)NCBIChiLan1.0ChiLan1.0
TRNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.133,173,889 - 3,198,042 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl33,173,943 - 3,194,672 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v033,069,858 - 3,095,006 (+)NCBIMhudiblu_PPA_v0panPan3
TRNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12014,275,853 - 14,296,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2014,271,966 - 14,296,666 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2014,240,101 - 14,261,193 (-)NCBI
ROS_Cfam_1.02014,306,431 - 14,327,724 (-)NCBI
UMICH_Zoey_3.12014,008,098 - 14,029,429 (-)NCBI
UNSW_CanFamBas_1.02014,342,733 - 14,363,726 (-)NCBI
UU_Cfam_GSD_1.02014,333,569 - 14,354,900 (-)NCBI
Trnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049429,859,039 - 9,873,953 (+)NCBI
SpeTri2.0NW_0049365772,814,464 - 2,834,068 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1359,711,140 - 59,736,054 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11359,647,835 - 59,736,054 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21366,007,210 - 66,022,553 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRNT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12239,220,163 - 39,247,110 (+)NCBI
ChlSab1.1 Ensembl2239,222,663 - 39,246,112 (+)Ensembl
Trnt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477313,363,449 - 13,382,789 (+)NCBI

Position Markers
RH127525  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,779,002 - 106,779,203UniSTSGRCm38
MGSCv376106,728,996 - 106,729,197UniSTSGRCm37
Celera6108,596,280 - 108,596,481UniSTS
Cytogenetic Map6E2UniSTS
AI987788  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381812,150,919 - 12,151,007UniSTSGRCm38
GRCm386106,782,334 - 106,782,422UniSTSGRCm38
MGSCv376106,732,328 - 106,732,416UniSTSGRCm37
MGSCv371812,309,428 - 12,309,516UniSTSGRCm37
Celera1812,384,442 - 12,384,531UniSTS
Celera6108,599,612 - 108,599,700UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map6E2UniSTS
cM Map183.0UniSTS
Whitehead/MRC_RH12075.06UniSTS
AW108261  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,780,569 - 106,780,651UniSTSGRCm38
MGSCv376106,730,563 - 106,730,645UniSTSGRCm37
Celera6108,597,847 - 108,597,929UniSTS
Cytogenetic Map6E2UniSTS
Whitehead/MRC_RH61105.34UniSTS
RH124706  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,782,202 - 106,782,330UniSTSGRCm38
GRCm381812,150,787 - 12,150,915UniSTSGRCm38
MGSCv376106,732,196 - 106,732,324UniSTSGRCm37
MGSCv371812,309,296 - 12,309,424UniSTSGRCm37
Celera1812,384,310 - 12,384,438UniSTS
Celera6108,599,480 - 108,599,608UniSTS
Cytogenetic Map6E2UniSTS
Cytogenetic Map18A2UniSTS
cM Map183.0UniSTS
RH125992  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386106,782,216 - 106,782,448UniSTSGRCm38
MGSCv376106,732,210 - 106,732,442UniSTSGRCm37
Celera6108,599,494 - 108,599,726UniSTS
Cytogenetic Map6E2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105564822114368849Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:869
Count of miRNA genes:522
Interacting mature miRNAs:611
Transcripts:ENSMUST00000057578, ENSMUST00000113247, ENSMUST00000113248, ENSMUST00000113249, ENSMUST00000147084, ENSMUST00000154026
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001242358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001242360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB063106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU755617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000057578   ⟹   ENSMUSP00000060900
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,166 - 106,782,474 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113247   ⟹   ENSMUSP00000108873
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,120 - 106,777,681 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113248   ⟹   ENSMUSP00000108874
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,166 - 106,781,654 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113249   ⟹   ENSMUSP00000108875
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,141 - 106,781,871 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147084
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,170 - 106,770,164 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154026
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,213 - 106,773,055 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204782   ⟹   ENSMUSP00000144850
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,507 - 106,774,465 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205163   ⟹   ENSMUSP00000144943
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6106,769,286 - 106,773,351 (+)Ensembl
RefSeq Acc Id: NM_001242358   ⟹   NP_001229287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,099 - 106,759,435 (+)NCBI
GRCm386106,769,138 - 106,782,474 (+)NCBI
Celera6108,586,420 - 108,599,752 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001242360   ⟹   NP_001229289
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,099 - 106,754,642 (+)NCBI
GRCm386106,769,138 - 106,777,681 (+)NCBI
Celera6108,586,420 - 108,599,752 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_027296   ⟹   NP_081572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,099 - 106,759,435 (+)NCBI
GRCm386106,769,138 - 106,782,474 (+)NCBI
MGSCv376106,719,166 - 106,732,463 (+)RGD
Celera6108,586,420 - 108,599,752 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506581   ⟹   XP_006506644
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,109 - 106,759,435 (+)NCBI
GRCm386106,769,147 - 106,782,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152295   ⟹   XP_036008188
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,108 - 106,759,435 (+)NCBI
RefSeq Acc Id: XM_036152296   ⟹   XP_036008189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,108 - 106,759,435 (+)NCBI
RefSeq Acc Id: XM_036152297   ⟹   XP_036008190
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396106,746,123 - 106,759,435 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_081572   ⟸   NM_027296
- Peptide Label: isoform a
- UniProtKB: Q8K1J6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229287   ⟸   NM_001242358
- Peptide Label: isoform a
- UniProtKB: Q8K1J6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001229289   ⟸   NM_001242360
- Peptide Label: isoform b
- UniProtKB: Q8K1J6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506644   ⟸   XM_006506581
- Peptide Label: isoform X1
- UniProtKB: Q8K1J6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000108873   ⟸   ENSMUST00000113247
RefSeq Acc Id: ENSMUSP00000108875   ⟸   ENSMUST00000113249
RefSeq Acc Id: ENSMUSP00000108874   ⟸   ENSMUST00000113248
RefSeq Acc Id: ENSMUSP00000144943   ⟸   ENSMUST00000205163
RefSeq Acc Id: ENSMUSP00000144850   ⟸   ENSMUST00000204782
RefSeq Acc Id: ENSMUSP00000060900   ⟸   ENSMUST00000057578
RefSeq Acc Id: XP_036008189   ⟸   XM_036152296
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036008188   ⟸   XM_036152295
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036008190   ⟸   XM_036152297
- Peptide Label: isoform X2
Protein Domains
PolyA_pol

Promoters
RGD ID:6840111
Promoter ID:MM_KWN:47088
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000101098,   ENSMUST00000113247,   ENSMUST00000113248,   ENSMUST00000113249,   OTTMUST00000057361,   OTTMUST00000057365,   OTTMUST00000057366
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366106,718,881 - 106,719,381 (+)MPROMDB
RGD ID:6890570
Promoter ID:EPDNEW_M8736
Type:initiation region
Name:Trnt1_1
Description:Mus musculus tRNA nucleotidyl transferase, CCA-adding, 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386106,769,168 - 106,769,228EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917297 AgrOrtholog
Ensembl Genes ENSMUSG00000013736 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000060900 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108873 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108874 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108875 UniProtKB/Swiss-Prot
  ENSMUSP00000144850 UniProtKB/TrEMBL
  ENSMUSP00000144943 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000057578 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113247 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113248 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113249 UniProtKB/Swiss-Prot
  ENSMUST00000204782 UniProtKB/TrEMBL
  ENSMUST00000205163 UniProtKB/TrEMBL
Gene3D-CATH 3.30.460.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro NT_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PolA_pol_head_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PolyA_RNA-bd UniProtKB/Swiss-Prot
KEGG Report mmu:70047 UniProtKB/Swiss-Prot
MGD MGI:1917297 ENTREZGENE
NCBI Gene 70047 ENTREZGENE
Pfam PolyA_pol UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PolyA_pol_RNAbd UniProtKB/Swiss-Prot
PhenoGen Trnt1 PhenoGen
Superfamily-SCOP SSF81301 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SUW4_MOUSE UniProtKB/TrEMBL
  A0A0N4SV41_MOUSE UniProtKB/TrEMBL
  Q8K1J6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TKW1 UniProtKB/Swiss-Prot
  Q3UX99 UniProtKB/Swiss-Prot
  Q920N6 UniProtKB/Swiss-Prot
  Q9CSX0 UniProtKB/Swiss-Prot