Tgif2 (TGFB-induced factor homeobox 2) - Rat Genome Database

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Gene: Tgif2 (TGFB-induced factor homeobox 2) Mus musculus
Analyze
Symbol: Tgif2
Name: TGFB-induced factor homeobox 2
RGD ID: 1557804
MGI Page MGI
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within several processes, including nodal signaling pathway; positive regulation of amacrine cell differentiation; and regulation of gastrulation. Predicted to be located in centrosome and nucleoplasm. Is expressed in several structures, including alimentary system; brain; forelimb phalanx; genitourinary system; and sensory organ. Orthologous to human TGIF2 (TGFB induced factor homeobox 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4921501K24; 5'-TG-3'-interacting factor 2; 5730599O09Rik; C80753; C81206; expressed sequence C81206; homeobox protein TGIF2; RIKEN cDNA 5730599O09 gene; TALE family homeobox; TGF-beta-induced transcription factor 2; TGFB-induced factor 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Tgif2-ps1   Tgif2-ps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,681,737 - 156,697,490 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2156,681,927 - 156,697,490 (+)EnsemblGRCm39 Ensembl
GRCm382156,839,817 - 156,855,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,840,007 - 156,855,570 (+)EnsemblGRCm38mm10GRCm38
MGSCv372156,665,813 - 156,681,268 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,531,518 - 156,546,973 (+)NCBIMGSCv36mm8
Celera2162,776,165 - 162,791,616 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bisphenol A  (ISO)
bleomycin A2  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
etoposide  (EXP)
folic acid  (EXP)
gentamycin  (ISO)
glyphosate  (ISO)
hydralazine  (ISO)
L-methionine  (EXP)
lidocaine  (ISO)
methimazole  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
quercetin  (ISO)
quercitrin  (ISO)
resveratrol  (ISO)
rimonabant  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
tungsten  (EXP)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15142957   PMID:15749073   PMID:15782199   PMID:15831469  
PMID:16141072   PMID:16141073   PMID:16436215   PMID:16602821   PMID:17609113   PMID:18094028   PMID:18287559   PMID:18799693   PMID:18926818   PMID:19741146   PMID:20040491   PMID:20412781  
PMID:20932939   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22383895   PMID:22514746   PMID:22988430   PMID:24952961   PMID:25191221   PMID:27187787   PMID:27626380   PMID:27924807  
PMID:27956704   PMID:28193997   PMID:29472293   PMID:30504829   PMID:30808659   PMID:30872457   PMID:31066043   PMID:34741437   PMID:35592894   PMID:38355793  


Genomics

Comparative Map Data
Tgif2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392156,681,737 - 156,697,490 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2156,681,927 - 156,697,490 (+)EnsemblGRCm39 Ensembl
GRCm382156,839,817 - 156,855,570 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,840,007 - 156,855,570 (+)EnsemblGRCm38mm10GRCm38
MGSCv372156,665,813 - 156,681,268 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362156,531,518 - 156,546,973 (+)NCBIMGSCv36mm8
Celera2162,776,165 - 162,791,616 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.86NCBI
TGIF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382036,573,464 - 36,593,950 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2036,573,488 - 36,593,950 (+)EnsemblGRCh38hg38GRCh38
GRCh372035,201,867 - 35,222,353 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362034,635,424 - 34,655,767 (+)NCBINCBI36Build 36hg18NCBI36
Build 342034,635,436 - 34,655,764NCBI
Celera2031,909,069 - 31,929,392 (+)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2031,911,365 - 31,958,409 (+)NCBIHuRef
CHM1_12035,103,593 - 35,124,063 (+)NCBICHM1_1
T2T-CHM13v2.02038,297,339 - 38,317,802 (+)NCBIT2T-CHM13v2.0
Tgif2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,791,101 - 165,808,669 (+)NCBIGRCr8
mRatBN7.23145,333,152 - 145,348,599 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3145,333,418 - 145,348,596 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1746,929,662 - 46,930,375 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3149,198,892 - 149,214,066 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,815,505 - 157,830,773 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03155,554,800 - 155,569,962 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03152,906,961 - 152,924,380 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,909,189 - 152,924,377 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03158,772,764 - 158,788,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43147,239,123 - 147,254,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3144,050,368 - 144,065,544 (+)NCBICelera
Cytogenetic Map3q42NCBI
Tgif2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,024,359 - 25,041,459 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542225,024,359 - 25,042,568 (-)NCBIChiLan1.0ChiLan1.0
TGIF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22142,311,716 - 42,332,204 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12042,304,818 - 42,325,296 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02032,906,641 - 32,927,119 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12034,025,859 - 34,046,354 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2034,028,415 - 34,046,354 (+)Ensemblpanpan1.1panPan2
TGIF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12425,360,363 - 25,375,531 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2425,364,357 - 25,373,302 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,996,994 - 25,021,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02426,044,664 - 26,069,117 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2426,057,803 - 26,066,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12425,327,378 - 25,351,679 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02425,422,053 - 25,446,452 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,913,184 - 25,937,488 (+)NCBIUU_Cfam_GSD_1.0
Tgif2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640174,284,161 - 174,299,452 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365614,450,026 - 4,465,341 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365614,450,093 - 4,465,358 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGIF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1739,675,088 - 39,858,154 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11739,840,649 - 39,858,162 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TGIF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1257,437,535 - 57,461,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl257,437,623 - 57,462,000 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660873,929,847 - 3,952,577 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgif2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248422,909,016 - 2,926,555 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tgif2
810 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2593
Count of miRNA genes:637
Interacting mature miRNAs:787
Transcripts:ENSMUST00000073352, ENSMUST00000081335, ENSMUST00000109564, ENSMUST00000150078, ENSMUST00000175634, ENSMUST00000176281
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
Tgif2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv372156,679,302 - 156,679,621UniSTSGRCm37
MGSCv372156,679,040 - 156,679,131UniSTSGRCm37
MGSCv371740,252,930 - 40,253,249UniSTSGRCm37
MGSCv371740,252,668 - 40,252,759UniSTSGRCm37
Celera1743,520,472 - 43,520,791UniSTS
Celera2162,789,649 - 162,789,968UniSTS
Celera1743,520,210 - 43,520,301UniSTS
Celera2162,789,387 - 162,789,478UniSTS
Cytogenetic Map2H1UniSTS
cM Map2 UniSTS
RH126967  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H2UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map17B2UniSTS
RH127030  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2H1UniSTS
UniSTS:234580  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,843,182 - 156,843,297UniSTSGRCm38
MGSCv372156,668,918 - 156,669,033UniSTSGRCm37
Celera2162,779,267 - 162,779,382UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2H2UniSTS
Tgif2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381740,115,987 - 40,116,306UniSTSGRCm38
GRCm382156,853,566 - 156,853,885UniSTSGRCm38
MGSCv371740,252,930 - 40,253,249UniSTSGRCm37
MGSCv372156,679,302 - 156,679,621UniSTSGRCm37
Celera1743,520,472 - 43,520,791UniSTS
Celera2162,789,649 - 162,789,968UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map2H1UniSTS
cM Map2 UniSTS
Tgif2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381740,115,725 - 40,115,816UniSTSGRCm38
GRCm382156,853,304 - 156,853,395UniSTSGRCm38
MGSCv371740,252,668 - 40,252,759UniSTSGRCm37
MGSCv372156,679,040 - 156,679,131UniSTSGRCm37
Celera2162,789,387 - 162,789,478UniSTS
Celera1743,520,210 - 43,520,301UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map2H1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006499354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK013541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC158022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ030806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF731285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000073352   ⟹   ENSMUSP00000073074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2156,682,020 - 156,697,490 (+)Ensembl
GRCm38.p6 Ensembl2156,840,100 - 156,855,570 (+)Ensembl
Ensembl Acc Id: ENSMUST00000081335   ⟹   ENSMUSP00000096745
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2156,681,927 - 156,697,490 (+)Ensembl
GRCm38.p6 Ensembl2156,840,007 - 156,855,570 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150078   ⟹   ENSMUSP00000134959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2156,682,942 - 156,689,594 (+)Ensembl
GRCm38.p6 Ensembl2156,841,022 - 156,847,674 (+)Ensembl
Ensembl Acc Id: ENSMUST00000175634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2156,691,876 - 156,695,113 (+)Ensembl
GRCm38.p6 Ensembl2156,849,956 - 156,853,193 (+)Ensembl
Ensembl Acc Id: ENSMUST00000176281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2156,692,756 - 156,695,467 (+)Ensembl
GRCm38.p6 Ensembl2156,850,836 - 156,853,547 (+)Ensembl
RefSeq Acc Id: NM_001291124   ⟹   NP_001278053
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,681,927 - 156,697,490 (+)NCBI
GRCm382156,840,007 - 156,855,570 (+)NCBI
Celera2162,776,095 - 162,791,654 (+)NCBI
Sequence:
RefSeq Acc Id: NM_173396   ⟹   NP_775572
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,681,927 - 156,697,490 (+)NCBI
GRCm382156,840,007 - 156,855,570 (+)NCBI
MGSCv372156,665,813 - 156,681,268 (+)RGD
Celera2162,776,095 - 162,791,654 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006499351   ⟹   XP_006499414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,682,566 - 156,697,490 (+)NCBI
GRCm382156,840,708 - 156,855,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499352   ⟹   XP_006499415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,683,044 - 156,697,490 (+)NCBI
GRCm382156,841,122 - 156,855,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499353   ⟹   XP_006499416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,681,737 - 156,697,490 (+)NCBI
GRCm382156,839,817 - 156,855,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006499354   ⟹   XP_006499417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,682,291 - 156,697,490 (+)NCBI
GRCm382156,840,388 - 156,855,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030250654   ⟹   XP_030106514
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,682,590 - 156,697,490 (+)NCBI
GRCm382156,840,741 - 156,855,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161591   ⟹   XP_036017484
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,683,040 - 156,697,490 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036161592   ⟹   XP_036017485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392156,682,308 - 156,697,490 (+)NCBI
Sequence:
RefSeq Acc Id: NP_775572   ⟸   NM_173396
- Peptide Label: isoform a
- UniProtKB: Q8C0Y1 (UniProtKB/Swiss-Prot),   A2AVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499416   ⟸   XM_006499353
- Peptide Label: isoform X1
- UniProtKB: Q8C0Y1 (UniProtKB/Swiss-Prot),   A2AVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499417   ⟸   XM_006499354
- Peptide Label: isoform X1
- UniProtKB: Q8C0Y1 (UniProtKB/Swiss-Prot),   A2AVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499414   ⟸   XM_006499351
- Peptide Label: isoform X1
- UniProtKB: Q8C0Y1 (UniProtKB/Swiss-Prot),   A2AVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006499415   ⟸   XM_006499352
- Peptide Label: isoform X1
- UniProtKB: Q8C0Y1 (UniProtKB/Swiss-Prot),   A2AVY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278053   ⟸   NM_001291124
- Peptide Label: isoform b
- UniProtKB: Q3TZS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030106514   ⟸   XM_030250654
- Peptide Label: isoform X2
- UniProtKB: Q3TZS1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000134959   ⟸   ENSMUST00000150078
Ensembl Acc Id: ENSMUSP00000073074   ⟸   ENSMUST00000073352
Ensembl Acc Id: ENSMUSP00000096745   ⟸   ENSMUST00000081335
RefSeq Acc Id: XP_036017485   ⟸   XM_036161592
- Peptide Label: isoform X2
- UniProtKB: Q3TZS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036017484   ⟸   XM_036161591
- Peptide Label: isoform X2
- UniProtKB: Q3TZS1 (UniProtKB/TrEMBL)
Protein Domains
Homeobox   KN homeodomain

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C0Y1-F1-model_v2 AlphaFold Q8C0Y1 1-237 view protein structure

Promoters
RGD ID:6831723
Promoter ID:MM_KWN:32648
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:LINCRNA_622,   OTTMUST00000038235,   OTTMUST00000038243,   OTTMUST00000038244,   OTTMUST00000038245,   UC008NNX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362156,665,356 - 156,665,856 (-)MPROMDB
RGD ID:6832928
Promoter ID:MM_KWN:32649
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1
Transcripts:ENSMUST00000109564,   OTTMUST00000038238
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362156,666,796 - 156,667,296 (+)MPROMDB
RGD ID:6879434
Promoter ID:EPDNEW_M3168
Type:initiation region
Name:Tgif2_1
Description:Mus musculus TGFB-induced factor homeobox 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382156,840,134 - 156,840,194EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915299 AgrOrtholog
Ensembl Genes ENSMUSG00000062175 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073352 ENTREZGENE
  ENSMUST00000073352.10 UniProtKB/TrEMBL
  ENSMUST00000081335 ENTREZGENE
  ENSMUST00000081335.13 UniProtKB/Swiss-Prot
  ENSMUST00000150078.2 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_KN_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TALE_homeobox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:228839 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1915299 ENTREZGENE
NCBI Gene Tgif2 ENTREZGENE
PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Homeobox_KN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tgif2 PhenoGen
PROSITE HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AVY9 ENTREZGENE, UniProtKB/TrEMBL
  H3BJF0_MOUSE UniProtKB/TrEMBL
  Q3TZS1 ENTREZGENE, UniProtKB/TrEMBL
  Q8C0Y1 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Tgif2  TGFB-induced factor homeobox 2  5730599O09Rik  RIKEN cDNA 5730599O09 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 5730599O09Rik  RIKEN cDNA 5730599O09 gene  Tgif2  TGFB-induced factor homeobox 2  Symbol and/or name change 5135510 APPROVED