Phf14 (PHD finger protein 14) - Rat Genome Database

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Gene: Phf14 (PHD finger protein 14) Mus musculus
Analyze
Symbol: Phf14
Name: PHD finger protein 14
RGD ID: 1557742
MGI Page MGI
Description: Predicted to enable metal ion binding activity. Acts upstream of or within several processes, including lung alveolus development; negative regulation of mesenchymal cell proliferation involved in lung development; and negative regulation of platelet-derived growth factor receptor-alpha signaling pathway. Located in nucleus. Is expressed in several structures, including alimentary system; early conceptus; genitourinary system; hindlimb phalanx; and nervous system. Orthologous to human PHF14 (PHD finger protein 14).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110001C23Rik; 4932409F11Rik; 5730446A07Rik; AA623952; AV297001; KIAA0783; mKIAA0783
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7575  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39611,907,728 - 12,100,155 (+)NCBIGRCm39mm39
GRCm39 Ensembl611,907,808 - 12,081,204 (+)Ensembl
GRCm38611,907,725 - 12,100,156 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl611,907,809 - 12,081,205 (+)EnsemblGRCm38mm10GRCm38
MGSCv37611,875,881 - 12,031,198 (+)NCBIGRCm37mm9NCBIm37
MGSCv36611,875,881 - 11,958,012 (+)NCBImm8
Celera612,018,537 - 12,179,864 (+)NCBICelera
Cytogenetic Map6A1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15368895   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18287559  
PMID:18799693   PMID:20059953   PMID:20412781   PMID:21267068   PMID:21873635   PMID:22496869   PMID:22730381   PMID:22988430   PMID:23688586   PMID:28045076   PMID:29459677   PMID:30595499  
PMID:32325033   PMID:33035772   PMID:35074918  


Genomics

Comparative Map Data
Phf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39611,907,728 - 12,100,155 (+)NCBIGRCm39mm39
GRCm39 Ensembl611,907,808 - 12,081,204 (+)Ensembl
GRCm38611,907,725 - 12,100,156 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl611,907,809 - 12,081,205 (+)EnsemblGRCm38mm10GRCm38
MGSCv37611,875,881 - 12,031,198 (+)NCBIGRCm37mm9NCBIm37
MGSCv36611,875,881 - 11,958,012 (+)NCBImm8
Celera612,018,537 - 12,179,864 (+)NCBICelera
Cytogenetic Map6A1NCBI
PHF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38710,973,872 - 11,169,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl710,973,336 - 11,169,623 (+)EnsemblGRCh38hg38GRCh38
GRCh37711,013,499 - 11,209,245 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36710,980,041 - 11,175,770 (+)NCBINCBI36hg18NCBI36
Build 34710,786,755 - 10,916,522NCBI
Celera710,988,278 - 11,184,064 (+)NCBI
Cytogenetic Map7p21.3NCBI
HuRef710,871,710 - 11,067,466 (+)NCBIHuRef
CHM1_1711,014,060 - 11,209,823 (+)NCBICHM1_1
T2T-CHM13v2.0711,104,462 - 11,300,224 (+)NCBI
CRA_TCAGchr7v2711,067,044 - 11,262,833 (+)NCBI
Phf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2440,009,691 - 40,195,870 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl440,009,264 - 40,195,885 (+)Ensembl
Rnor_6.0438,241,189 - 38,420,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,240,728 - 38,420,205 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0438,078,577 - 38,258,235 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4437,147,379 - 37,253,334 (+)NCBIRGSC3.4rn4RGSC3.4
Celera435,435,842 - 35,519,141 (+)NCBICelera
Cytogenetic Map4q21NCBI
Phf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543217,535,224 - 17,697,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543217,535,222 - 17,807,106 (+)NCBIChiLan1.0ChiLan1.0
PHF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1710,972,523 - 11,169,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl710,972,503 - 11,169,377 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0711,608,934 - 11,822,039 (+)NCBIMhudiblu_PPA_v0panPan3
PHF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11425,907,955 - 26,089,666 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1425,914,188 - 26,125,766 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1425,490,268 - 25,706,731 (+)NCBI
ROS_Cfam_1.01425,717,801 - 25,935,411 (+)NCBI
ROS_Cfam_1.0 Ensembl1425,717,924 - 25,943,151 (+)Ensembl
UMICH_Zoey_3.11425,886,137 - 26,102,950 (+)NCBI
UNSW_CanFamBas_1.01425,615,308 - 25,832,273 (+)NCBI
UU_Cfam_GSD_1.01425,869,132 - 26,085,885 (+)NCBI
Phf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511839,464,583 - 39,648,117 (+)NCBI
SpeTri2.0NW_004936761585,261 - 768,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl980,678,207 - 80,866,146 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1980,677,185 - 80,866,160 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2988,596,841 - 88,786,401 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12147,013,239 - 47,213,030 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2147,013,251 - 47,212,968 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604257,227,594 - 57,432,108 (+)NCBIVero_WHO_p1.0
Phf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248278,122,307 - 8,366,113 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248278,122,179 - 8,337,721 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
UniSTS:235387  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38611,988,375 - 11,988,577UniSTSGRCm38
MGSCv37611,938,375 - 11,938,577UniSTSGRCm37
Celera612,080,789 - 12,080,991UniSTS
Cytogenetic Map6A2UniSTS
UniSTS:235386  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38611,933,404 - 11,933,615UniSTSGRCm38
MGSCv37611,883,404 - 11,883,615UniSTSGRCm37
Celera612,026,060 - 12,026,271UniSTS
Cytogenetic Map6A2UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:294
Interacting mature miRNAs:341
Transcripts:ENSMUST00000090632, ENSMUST00000115510, ENSMUST00000115511, ENSMUST00000133776, ENSMUST00000155037
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004933645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX524731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000090632   ⟹   ENSMUSP00000088126
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,925,914 - 12,008,080 (+)Ensembl
GRCm38.p6 Ensembl611,925,915 - 12,008,081 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115510   ⟹   ENSMUSP00000111172
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,925,880 - 12,008,012 (+)Ensembl
GRCm38.p6 Ensembl611,925,881 - 12,008,013 (+)Ensembl
RefSeq Acc Id: ENSMUST00000115511   ⟹   ENSMUSP00000111173
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,925,915 - 12,081,204 (+)Ensembl
GRCm38.p6 Ensembl611,925,916 - 12,081,205 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133776   ⟹   ENSMUSP00000115485
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,926,782 - 11,986,457 (+)Ensembl
GRCm38.p6 Ensembl611,926,783 - 11,986,458 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155037   ⟹   ENSMUSP00000144981
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,907,808 - 11,933,409 (+)Ensembl
GRCm38.p6 Ensembl611,907,809 - 11,933,410 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203045   ⟹   ENSMUSP00000145527
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl612,006,819 - 12,081,099 (+)Ensembl
GRCm38.p6 Ensembl612,006,820 - 12,081,100 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203222
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,987,063 - 11,988,654 (+)Ensembl
GRCm38.p6 Ensembl611,987,064 - 11,988,655 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203459   ⟹   ENSMUSP00000145355
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,907,883 - 11,953,379 (+)Ensembl
GRCm38.p6 Ensembl611,907,884 - 11,953,380 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204150
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl612,041,517 - 12,047,421 (+)Ensembl
GRCm38.p6 Ensembl612,041,518 - 12,047,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000204565
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl611,990,871 - 11,995,308 (+)Ensembl
GRCm38.p6 Ensembl611,990,872 - 11,995,309 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214543
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl612,044,378 - 12,081,197 (+)Ensembl
GRCm38.p6 Ensembl612,044,379 - 12,081,198 (+)Ensembl
RefSeq Acc Id: NM_001168382   ⟹   NP_001161854
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,925,880 - 12,081,197 (+)NCBI
GRCm38611,925,881 - 12,081,198 (+)NCBI
MGSCv37611,875,881 - 12,031,198 (+)RGD
Celera612,018,537 - 12,179,864 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362122   ⟹   NP_001349051
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,925,880 - 12,081,197 (+)NCBI
GRCm38611,925,881 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001362123   ⟹   NP_001349052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,828 - 12,039,758 (+)NCBI
GRCm38611,907,829 - 12,039,759 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029404   ⟹   NP_083680
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,925,880 - 12,008,080 (+)NCBI
GRCm38611,925,881 - 12,008,081 (+)NCBI
MGSCv37611,875,881 - 12,031,198 (+)RGD
Celera612,018,537 - 12,179,864 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505196   ⟹   XP_006505259
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
GRCm38611,925,881 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505197   ⟹   XP_006505260
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,759 - 12,081,197 (+)NCBI
GRCm38611,907,725 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505198   ⟹   XP_006505261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,047,944 (+)NCBI
GRCm38611,925,881 - 12,047,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505201   ⟹   XP_006505264
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
GRCm38611,925,884 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505202   ⟹   XP_006505265
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,732 - 12,081,197 (+)NCBI
GRCm38611,907,738 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011241085   ⟹   XP_011239387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,100,155 (+)NCBI
GRCm38611,925,882 - 12,100,156 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321819   ⟹   XP_017177308
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,732 - 12,081,197 (+)NCBI
GRCm38611,907,738 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255656   ⟹   XP_030111516
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,750 - 12,081,197 (+)NCBI
GRCm38611,907,725 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152388   ⟹   XP_036008281
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,759 - 12,008,012 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001785183
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,195 (+)NCBI
GRCm38611,925,879 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003956260
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
GRCm38611,925,881 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003956261
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
GRCm38611,925,882 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003956263
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
GRCm38611,925,882 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003956264
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,732 - 12,081,197 (+)NCBI
GRCm38611,907,738 - 12,081,198 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933631
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933632
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933633
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933634
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933635
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933636
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933637
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933638
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933639
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933640
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933641
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933642
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933643
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933644
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,907,728 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004933645
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377293
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39611,922,977 - 12,081,197 (+)NCBI
GRCm38611,925,882 - 12,081,198 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_083680   ⟸   NM_029404
- Peptide Label: isoform 2
- UniProtKB: Q9D4H9 (UniProtKB/Swiss-Prot),   G5E8S0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001161854   ⟸   NM_001168382
- Peptide Label: isoform 1
- UniProtKB: Q9D4H9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505260   ⟸   XM_006505197
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505265   ⟸   XM_006505202
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006505259   ⟸   XM_006505196
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505261   ⟸   XM_006505198
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006505264   ⟸   XM_006505201
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011239387   ⟸   XM_011241085
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017177308   ⟸   XM_017321819
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030111516   ⟸   XM_030255656
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001349052   ⟸   NM_001362123
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001349051   ⟸   NM_001362122
- Peptide Label: isoform 3
RefSeq Acc Id: ENSMUSP00000145355   ⟸   ENSMUST00000203459
RefSeq Acc Id: ENSMUSP00000088126   ⟸   ENSMUST00000090632
RefSeq Acc Id: ENSMUSP00000145527   ⟸   ENSMUST00000203045
RefSeq Acc Id: ENSMUSP00000111172   ⟸   ENSMUST00000115510
RefSeq Acc Id: ENSMUSP00000111173   ⟸   ENSMUST00000115511
RefSeq Acc Id: ENSMUSP00000115485   ⟸   ENSMUST00000133776
RefSeq Acc Id: ENSMUSP00000144981   ⟸   ENSMUST00000155037
RefSeq Acc Id: XP_036008281   ⟸   XM_036152388
- Peptide Label: isoform X6
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D4H9-F1-model_v2 AlphaFold Q9D4H9 1-881 view protein structure

Promoters
RGD ID:6839748
Promoter ID:MM_KWN:45172
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001168382,   NM_029404,   OTTMUST00000042043,   UC009AYF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36611,875,766 - 11,876,522 (+)MPROMDB
RGD ID:6889026
Promoter ID:EPDNEW_M7958
Type:initiation region
Name:Phf14_1
Description:Mus musculus PHD finger protein 14 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38611,925,912 - 11,925,972EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923539 AgrOrtholog
Ensembl Genes ENSMUSG00000029629 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000088126 UniProtKB/Swiss-Prot
  ENSMUSP00000111172 ENTREZGENE
  ENSMUSP00000111172.2 UniProtKB/TrEMBL
  ENSMUSP00000111173 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000115485.2 UniProtKB/TrEMBL
  ENSMUSP00000144981.2 UniProtKB/TrEMBL
  ENSMUSP00000145355.2 UniProtKB/TrEMBL
  ENSMUSP00000145527.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090632 UniProtKB/Swiss-Prot
  ENSMUST00000115510 ENTREZGENE
  ENSMUST00000115510.8 UniProtKB/TrEMBL
  ENSMUST00000115511 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000133776.2 UniProtKB/TrEMBL
  ENSMUST00000155037.4 UniProtKB/TrEMBL
  ENSMUST00000203045.2 UniProtKB/TrEMBL
  ENSMUST00000203459.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EPHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:75725 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1923539 ENTREZGENE
NCBI Gene 75725 ENTREZGENE
Pfam PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phf14 PhenoGen
PROSITE EPHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SV73_MOUSE UniProtKB/TrEMBL
  A0A0N4SW36_MOUSE UniProtKB/TrEMBL
  A0A0N4SWI1_MOUSE UniProtKB/TrEMBL
  F6TN92_MOUSE UniProtKB/TrEMBL
  G5E8S0 ENTREZGENE, UniProtKB/TrEMBL
  PHF14_MOUSE UniProtKB/Swiss-Prot
  Q69ZZ4_MOUSE UniProtKB/TrEMBL
  Q9D4H9 ENTREZGENE
UniProt Secondary Q810Z6 UniProtKB/Swiss-Prot
  Q8C284 UniProtKB/Swiss-Prot
  Q8CGF8 UniProtKB/Swiss-Prot
  Q9D1Q8 UniProtKB/Swiss-Prot